Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Os11g0169600 Oryza sativa ssp. japonica HOM05M002628 ORTHO05M002916 3.2e-208 727.6 429 100.0
OsKitaake11g046400 Oryza sativa Kitaake HOM05M002628 ORTHO05M002916 7.1e-208 726.5 429 99.8
GWHGAZTO010640 Oryza alta HOM05M002628 ORTHO05M002916 9.3e-200 699.5 429 96.7
PH02Gene48347 Phyllostachys edulis HOM05M002628 ORTHO05M002916 2.2e-177 625.2 432 88.2
Sobic.001G117300 Sorghum bicolor HOM05M002628 ORTHO05M002916 1.5e-176 622.5 409 87.5
GWHGAORA010938 Cenchrus purpureus HOM05M002628 ORTHO05M002916 2.1e-175 618.6 411 88.1
Pahal.4G038500 Panicum hallii HOM05M002628 ORTHO05M002916 4.7e-175 617.5 410 88.3
Zm00001eb122600 Zea mays B73 HOM05M002628 ORTHO05M002916 3.0e-174 614.8 409 85.3
PH02Gene17724 Phyllostachys edulis HOM05M002628 ORTHO05M002916 6.7e-174 613.6 434 86.9
Seita.4G257600 Setaria italica HOM05M002628 ORTHO05M002916 1.5e-173 612.5 410 85.9
Sevir.4G268900 Setaria viridis HOM05M002628 ORTHO05M002916 4.4e-173 610.9 410 85.6
Sevir.8G049700 Setaria viridis HOM05M002628 ORTHO05M002916 1.3e-172 609.4 410 82.2
V3.Lp_chr4_0G12104 Lolium perenne HOM05M002628 ORTHO05M002916 2.8e-172 608.2 411 87.3
Seita.8G048600 Setaria italica HOM05M002628 ORTHO05M002916 6.3e-172 607.1 410 79.8
EJB05_29207 Eragrostis curvula HOM05M002628 ORTHO05M002916 9.1e-171 603.2 361 87.5
Zjn_sc00031.1.g01970.1.sm.mk Zoysia japonica ssp. nagirizaki HOM05M002628 ORTHO05M002916 9.1e-171 603.2 430 83.7
GWHGAORA029053 Cenchrus purpureus HOM05M002628 ORTHO05M002916 5.9e-170 600.5 428 83.6
Zm00007a00008243 Zea mays B104 HOM05M002628 ORTHO05M002916 2.2e-169 598.6 361 86.7
Horvu_MOREX_4H01G132200 Hordeum vulgare HOM05M002628 ORTHO05M002916 6.5e-169 597.0 442 84.6
AET4Gv20234700 Aegilops tauschii HOM05M002628 ORTHO05M002916 1.5e-168 595.9 433 80.1
TraesCS4B03G0253300 Triticum aestivum HOM05M002628 ORTHO05M002916 2.5e-168 595.1 442 79.9
GWHGASIY020477 Secale cereale HOM05M002628 ORTHO05M002916 4.2e-168 594.3 442 84.4
TRITD4Bv1G043480 Triticum turgidum HOM05M002628 ORTHO05M002916 7.2e-168 593.6 442 79.6
TraesCS4A03G0552600 Triticum aestivum HOM05M002628 ORTHO05M002916 3.6e-167 591.3 442 83.7
TRIDC4AG032980 Triticum dicoccoides HOM05M002628 ORTHO05M002916 3.6e-167 591.3 442 83.7
TRITD4Av1G160300 Triticum turgidum HOM05M002628 ORTHO05M002916 3.6e-167 591.3 442 83.7
TraesCS4D03G0216500 Triticum aestivum HOM05M002628 ORTHO05M002916 1.4e-166 589.3 442 79.9
GWHGAZTO062813 Oryza alta HOM05M000661 ORTHO05M000565 1.5e-165 585.9 367 94.0
Zm00001eb366420 Zea mays B73 HOM05M002628 ORTHO05M002916 1.3e-164 582.8 437 76.9
Zm00007a00006288 Zea mays B104 HOM05M002628 ORTHO05M002916 1.3e-164 582.8 437 76.9
GWHGAORA057418 Cenchrus purpureus HOM05M002628 ORTHO05M002916 1.8e-163 578.9 413 85.2
GWHGASIY018718 Secale cereale HOM05M002628 ORTHO05M002916 2.0e-162 575.5 442 82.8
Bradi4g24260 Brachypodium distachyon HOM05M002628 ORTHO05M002916 1.4e-158 562.8 450 77.3
Sspon.03G0028990-1B Saccharum spontaneum HOM05M002628 ORTHO05M002916 1.0e-153 546.6 338 85.2
Sspon.03G0039700-2D Saccharum spontaneum HOM05M002628 ORTHO05M002916 4.4e-125 451.4 408 71.8
TRIDC4BG017220 Triticum dicoccoides HOM05M002628 ORTHO05M002916 2.8e-111 405.6 295 85.1
Ma11_g09800 Musa acuminata HOM05M002628 ORTHO05M002916 7.1e-99 364.4 427 52.7
DDU879G0321 Dioscorea dumetorum HOM05M002628 ORTHO05M002916 6.0e-98 361.3 370 57.6
DDU889G0014 Dioscorea dumetorum HOM05M002628 ORTHO05M002916 6.0e-98 361.3 370 57.6
p5.00_sc00012_p0163 Elaeis guineensis HOM05M002628 ORTHO05M002916 3.9e-97 358.6 416 55.0
CALSI_Maker00017801 Calamus simplicifolius HOM05M002628 ORTHO05M002916 1.5e-96 356.7 374 56.4
OB11G13610 Oryza brachyantha HOM05M000661 ORTHO05M000565 2.1e-95 352.8 248 89.9
p5.00_sc00271_p0018 Elaeis guineensis HOM05M002628 ORTHO05M002916 2.8e-95 352.4 379 55.1
HPP92_027808 Vanilla planifolia HOM05M002628 ORTHO05M002916 1.1e-94 350.5 422 49.8
HPP92_004401 Vanilla planifolia HOM05M005279 ORTHO05M006389 5.8e-93 344.7 374 53.2
Ma06_g14660 Musa acuminata HOM05M002628 ORTHO05M002916 4.6e-90 335.1 431 49.9
Glyma.08G073800 Glycine max HOM05M002628 ORTHO05M002916 6.0e-90 334.7 408 48.8
Glyma.05G118700 Glycine max HOM05M002628 ORTHO05M002916 1.1e-88 330.5 430 46.7
Spipo0G0120700 Spirodela polyrhiza HOM05M002628 ORTHO05M002916 4.3e-88 328.6 384 52.1
Potri.001G209800 Populus trichocarpa HOM05M002628 ORTHO05M002916 1.1e-86 323.9 415 47.7
Potri.003G020500 Populus trichocarpa HOM05M002628 ORTHO05M002916 9.0e-86 320.9 420 47.4
ATR0665G076 Amborella trichopoda HOM05M002628 ORTHO05M002916 5.9e-85 318.2 451 45.7
Zosma03g30750 Zostera marina HOM05M002628 ORTHO05M002916 2.9e-84 315.8 384 49.2
AT5G64090 Arabidopsis thaliana HOM05M002628 ORTHO05M002916 3.8e-84 315.5 426 45.8
CDE10G0321 Ceratophyllum demersum HOM05M002628 ORTHO05M002916 6.7e-81 304.7 340 51.8
CALSI_Maker00017797 Calamus simplicifolius HOM05M002628 ORTHO05M002916 5.3e-78 295.0 375 50.1
Spipo15G0009300 Spirodela polyrhiza HOM05M002628 ORTHO05M002916 5.9e-77 291.6 365 50.1
EJB05_29222 Eragrostis curvula HOM05M008915 ORTHO05M001543 7.7e-77 291.2 559 45.1
evm.TU.AsparagusV1_09.936.V1.1 Asparagus officinalis HOM05M002628 ORTHO05M002916 4.7e-74 282.0 359 47.4
MisinT158300 Miscanthus sinensis HOM05M002628 ORTHO05M002916 6.3e-71 271.6 198 81.8
SEGI_19382 Sequoiadendron giganteum HOM05M002628 ORTHO05M002916 1.2e-69 267.3 466 40.8
Misin05G348400 Miscanthus sinensis HOM05M002628 ORTHO05M002916 1.7e-68 263.5 184 84.2
CDE10G1288 Ceratophyllum demersum HOM05M002628 ORTHO05M002916 2.8e-63 246.1 404 42.1
SMO347G0067 Selaginella moellendorffii HOM05M002628 ORTHO05M002916 3.1e-62 242.7 362 43.1
MBI13_g09970_MAGBIO Magnolia biondii HOM05M002628 ORTHO05M002916 2.2e-52 209.9 365 38.6
Ma02_g00260 Musa acuminata HOM05M002628 ORTHO05M002916 2.2e-52 209.9 354 39.3
SEGI_11393 Sequoiadendron giganteum HOM05M002628 ORTHO05M002916 2.5e-51 206.5 537 32.0
Potri.009G158000 Populus trichocarpa HOM05M002628 ORTHO05M002916 3.6e-50 202.6 357 38.7
Asa8G02303 Allium sativum HOM05M002628 ORTHO05M002916 8.0e-50 201.4 246 45.1
p5.00_sc00143_p0002 Elaeis guineensis HOM05M002628 ORTHO05M002916 1.0e-49 201.1 353 38.8
Glyma.02G273600 Glycine max HOM05M002628 ORTHO05M002916 9.8e-48 194.5 358 39.4
AagrBONN_evm.TU.Sc2ySwM_117.2412 Anthoceros agrestis HOM05M002628 ORTHO05M002916 8.3e-47 191.4 352 37.5
Aco006256 Ananas comosus HOM05M002628 ORTHO05M002916 2.4e-46 189.9 369 38.5
Zosma01g12470 Zostera marina HOM05M002628 ORTHO05M002916 5.4e-46 188.7 355 36.1
Spipo21G0023200 Spirodela polyrhiza HOM05M002628 ORTHO05M002916 1.2e-45 187.6 349 38.4
Pp3c1_38570 Physcomitrium patens HOM05M002628 ORTHO05M002916 2.0e-45 186.8 383 35.5
Mapoly0051s0036 Marchantia polymorpha HOM05M002628 ORTHO05M002916 7.7e-45 184.9 392 33.2
DDU059G0094 Dioscorea dumetorum HOM05M002628 ORTHO05M002916 2.3e-44 183.3 342 38.9
AT5G21050 Arabidopsis thaliana HOM05M002628 ORTHO05M002916 6.6e-44 181.8 381 36.7
CALSI_Maker00024625 Calamus simplicifolius HOM05M002628 ORTHO05M002916 4.2e-43 179.1 353 36.8
Misin05G348300 Miscanthus sinensis HOM05M002628 ORTHO05M002916 1.6e-42 177.2 146 71.2
PH02Gene12458 Phyllostachys edulis HOM05M002628 ORTHO05M002916 2.8e-42 176.4 354 35.9
Solyc11g008070.1 Solanum lycopersicum HOM05M002628 ORTHO05M002916 2.8e-42 176.4 378 33.3
Pp3c10_7770 Physcomitrium patens HOM05M002628 ORTHO05M002916 4.7e-42 175.6 385 34.5
Dexi9A01G0010790 Digitaria exilis HOM05M002628 ORTHO05M002916 6.1e-42 175.3 348 36.5
Dexi9B01G0010340 Digitaria exilis HOM05M002628 ORTHO05M002916 8.0e-42 174.9 348 36.5
OsKitaake03g319000 Oryza sativa Kitaake HOM05M002628 ORTHO05M002916 1.0e-41 174.5 350 34.3
Os03g0722000 Oryza sativa ssp. japonica HOM05M002628 ORTHO05M002916 1.0e-41 174.5 350 34.3
GWHGAZTO026414 Oryza alta HOM05M002628 ORTHO05M002916 4.0e-41 172.6 350 35.1
Misin02G087500 Miscanthus sinensis HOM05M002628 ORTHO05M002916 2.0e-40 170.2 348 36.5
Sspon.01G0027460-1A Saccharum spontaneum HOM05M002628 ORTHO05M002916 2.6e-40 169.9 348 36.2
GWHGAZTO076331 Oryza alta HOM05M002628 ORTHO05M002916 5.7e-40 168.7 348 34.2
Potri.004G195900 Populus trichocarpa HOM05M002628 ORTHO05M002916 5.7e-40 168.7 356 35.7
Sevir.3G421900 Setaria viridis HOM05M002628 ORTHO05M002916 7.5e-40 168.3 351 34.5
Bradi1g10380 Brachypodium distachyon HOM05M002628 ORTHO05M002916 9.8e-40 167.9 326 35.6
Pahal.9G109300 Panicum hallii HOM05M002628 ORTHO05M002916 1.3e-39 167.5 351 35.9
Sspon.01G0027460-3C Saccharum spontaneum HOM05M002628 ORTHO05M002916 1.7e-39 167.2 343 36.4
Ot_Chr4_g07959 Oropetium thomaeum HOM05M002628 ORTHO05M002916 3.7e-39 166.0 357 33.9
HPP92_014392 Vanilla planifolia HOM05M002628 ORTHO05M002916 6.3e-39 165.2 345 34.8
Asa0G01100 Allium sativum HOM05M002628 ORTHO05M002916 1.4e-38 164.1 327 37.9
CDE04G2256 Ceratophyllum demersum HOM05M002628 ORTHO05M002916 1.4e-38 164.1 314 34.4
Seita.3G403700 Setaria italica HOM05M002628 ORTHO05M002916 2.4e-38 163.3 351 33.9
evm.TU.AsparagusV1_05.2539.V1.1 Asparagus officinalis HOM05M002628 ORTHO05M002916 3.1e-38 162.9 299 35.8
Zjn_sc00014.1.g02460.1.sm.mk Zoysia japonica ssp. nagirizaki HOM05M002628 ORTHO05M002916 3.1e-38 162.9 348 33.9
Zm00001eb055600 Zea mays B73 HOM05M002628 ORTHO05M002916 1.6e-37 160.6 348 33.9
Sobic.001G109900 Sorghum bicolor HOM05M002628 ORTHO05M002916 2.0e-37 160.2 348 35.9
AET4Gv20109800 Aegilops tauschii HOM05M002628 ORTHO05M002916 3.5e-37 159.5 354 32.2
GWHGAORA019419 Cenchrus purpureus HOM05M002628 ORTHO05M002916 3.5e-37 159.5 351 34.5
TraesCS4D03G0097200 Triticum aestivum HOM05M002628 ORTHO05M002916 3.5e-37 159.5 354 32.2
V3.Lp_chr4_0G6544 Lolium perenne HOM05M002628 ORTHO05M002916 7.8e-37 158.3 327 34.6
Seita.9G018700 Setaria italica HOM05M002628 ORTHO05M002916 1.0e-36 157.9 351 33.0
TRIDC4BG008280 Triticum dicoccoides HOM05M002628 ORTHO05M002916 1.0e-36 157.9 350 33.4
PH02Gene38633 Phyllostachys edulis HOM05M005478 ORTHO05M002916 1.3e-36 157.5 266 46.2
Misin01G100100 Miscanthus sinensis HOM05M002628 ORTHO05M002916 1.7e-36 157.1 348 34.8
GWHGASIY017949 Secale cereale HOM05M002628 ORTHO05M002916 2.3e-36 156.8 328 33.8
GWHGASIY018439 Secale cereale HOM05M002628 ORTHO05M002916 2.3e-36 156.8 328 33.8
CALSI_Maker00017812 Calamus simplicifolius HOM05M002628 ORTHO05M002916 8.6e-36 154.8 158 55.7
Sevir.9G018400 Setaria viridis HOM05M002628 ORTHO05M002916 8.6e-36 154.8 340 33.8
TraesCS4A03G0681900 Triticum aestivum HOM05M002628 ORTHO05M002916 2.5e-35 153.3 350 32.3
TRIDC4AG040940 Triticum dicoccoides HOM05M002628 ORTHO05M002916 1.6e-34 150.6 349 32.1
Sspon.03G0028990-2C Saccharum spontaneum HOM05M002628 ORTHO05M002916 1.3e-31 141.0 117 81.2
Zm00001eb424750 Zea mays B73 HOM05M002628 ORTHO05M002916 2.2e-31 140.2 98 73.5
Sspon.01G0027460-2B Saccharum spontaneum HOM05M002628 ORTHO05M002916 1.6e-29 134.0 325 33.8
Solyc10g047210.1 Solanum lycopersicum HOM05M002628 ORTHO05M002916 4.6e-29 132.5 199 42.7
PH02Gene25138 Phyllostachys edulis HOM05M002628 ORTHO05M002916 3.0e-28 129.8 314 33.8
p5.00_sc00143_p0003 Elaeis guineensis HOM05M002628 ORTHO05M002916 2.8e-26 123.2 267 32.6
Seita.9G112700 Setaria italica HOM05M002628 ORTHO05M002916 6.2e-26 122.1 315 32.1
Sevir.9G111200 Setaria viridis HOM05M002628 ORTHO05M002916 6.2e-26 122.1 315 32.1
Aco003215 Ananas comosus HOM05M002628 ORTHO05M002916 4.1e-22 109.4 319 34.8
TRITD4Bv1G016380 Triticum turgidum HOM05M002628 ORTHO05M002916 3.0e-20 103.2 214 33.2
CBR_g4270 Chara braunii HOM05M002628 ORTHO05M002916 3.9e-20 102.8 393 26.5
TRITD4Av1G190190 Triticum turgidum HOM05M002628 ORTHO05M002916 8.6e-20 101.7 214 31.8
Horvu_MOREX_4H01G054700 Hordeum vulgare HOM05M002628 ORTHO05M002916 1.4e-17 94.4 170 32.9
Asa8G02304 Allium sativum HOM05M002628 ORTHO05M002916 1.3e-15 87.8 61 68.9
Asa4G02381 Allium sativum HOM05M002628 ORTHO05M002916 1.7e-15 87.4 67 64.2
Asa7G02140 Allium sativum HOM05M002628 ORTHO05M002916 2.1e-13 80.5 163 36.2
Asa1G04812 Allium sativum HOM05M002628 ORTHO05M002916 2.3e-12 77.0 121 38.8
OB03G39340 Oryza brachyantha HOM05M002628 ORTHO05M002916 7.3e-11 72.0 68 48.5
Asa1G04811 Allium sativum HOM05M002628 ORTHO05M002916 2.0e-08 63.9 98 43.9
Sspon.05G0039670-1D Saccharum spontaneum HOM05M002628 ORTHO05M002916 2.2e-07 60.5 123 42.3
Zjn_sc00013.1.g02600.1.sm.mk Zoysia japonica ssp. nagirizaki HOM05M002628 ORTHO05M002916 9.2e-06 55.1 70 38.6


User provided reference genes

Program Settings