Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
OsKitaake11g035600 Oryza sativa Kitaake HOM05M003655 ORTHO05M002765 1.0e-139 499.2 242 100.0
Os11g0153300 Oryza sativa ssp. japonica HOM05M003655 ORTHO05M002765 1.0e-139 499.2 242 100.0
OsR498G1119433200.01 Oryza sativa ssp. indica HOM05M003655 ORTHO05M002765 5.9e-135 483.4 242 97.5
GWHGAZTO062683 Oryza alta HOM05M003655 ORTHO05M002765 4.9e-113 410.6 243 86.4
GWHGAZTO010495 Oryza alta HOM05M003655 ORTHO05M002765 2.4e-104 381.7 242 82.6
PH02Gene37783 Phyllostachys edulis HOM05M003655 ORTHO05M002765 1.4e-88 329.3 230 77.0
Horvu_MOREX_4H01G149100 Hordeum vulgare HOM05M003655 ORTHO05M002765 1.2e-87 326.2 252 70.6
Sspon.05G0019420-2P Saccharum spontaneum HOM05M003655 ORTHO05M002765 6.2e-84 313.9 247 70.9
TraesCS4A03G0525400 Triticum aestivum HOM05M003655 ORTHO05M002765 1.5e-82 309.3 253 68.0
TRITD4Av1G151920 Triticum turgidum HOM05M003655 ORTHO05M002765 1.5e-82 309.3 253 68.0
AET4Gv20249600 Aegilops tauschii HOM05M003655 ORTHO05M002765 5.8e-82 307.4 253 67.6
TraesCS4D03G0231900 Triticum aestivum HOM05M003655 ORTHO05M002765 5.8e-82 307.4 253 67.6
Seita.8G034900 Setaria italica HOM05M003655 ORTHO05M002765 1.3e-81 306.2 249 70.7
Misin09G028400 Miscanthus sinensis HOM05M003655 ORTHO05M002765 2.9e-81 305.1 240 72.1
MisinT424300 Miscanthus sinensis HOM05M003655 ORTHO05M002765 2.5e-80 302.0 254 68.9
Zm00001eb092640 Zea mays B73 HOM05M003655 ORTHO05M002765 4.2e-80 301.2 240 68.8
Zm00007a00052111 Zea mays B104 HOM05M003655 ORTHO05M002765 4.2e-80 301.2 240 68.8
GWHGAORA011294 Cenchrus purpureus HOM05M003655 ORTHO05M002765 9.3e-80 300.1 248 71.8
GWHGASIY019271 Secale cereale HOM05M003655 ORTHO05M002765 9.3e-80 300.1 249 67.9
GWHGASIY019307 Secale cereale HOM05M003655 ORTHO05M002765 9.3e-80 300.1 249 67.9
Sevir.8G034600 Setaria viridis HOM05M003655 ORTHO05M002765 2.1e-79 298.9 249 69.5
Sobic.008G038100 Sorghum bicolor HOM05M003655 ORTHO05M002765 2.1e-79 298.9 248 67.3
GWHGAORA042876 Cenchrus purpureus HOM05M003655 ORTHO05M002765 3.5e-79 298.1 253 70.0
TraesCS4B03G0272200 Triticum aestivum HOM05M003655 ORTHO05M002765 1.0e-78 296.6 252 66.7
TRITD4Bv1G048540 Triticum turgidum HOM05M003655 ORTHO05M002765 1.0e-78 296.6 252 66.7
PH02Gene26013 Phyllostachys edulis HOM05M003655 ORTHO05M002765 5.1e-78 294.3 215 74.9
Sevir.7G335500 Setaria viridis HOM05M003655 ORTHO05M002765 7.4e-77 290.4 245 66.9
Sspon.05G0019420-1A Saccharum spontaneum HOM05M003655 ORTHO05M002765 3.7e-76 288.1 233 69.1
Seita.7G325500 Setaria italica HOM05M003655 ORTHO05M002765 6.2e-76 287.3 245 66.5
Sspon.05G0019420-2B Saccharum spontaneum HOM05M000010 ORTHO05M001916 8.2e-76 287.0 238 68.1
Sobic.005G039100 Sorghum bicolor HOM05M003655 ORTHO05M002765 1.2e-74 283.1 263 65.0
Zjn_sc00028.1.g02310.1.sm.mk Zoysia japonica ssp. nagirizaki HOM05M003655 ORTHO05M002765 2.0e-74 282.3 251 66.5
Dexi3B01G0003270 Digitaria exilis HOM05M003655 ORTHO05M002765 2.6e-74 282.0 240 70.4
Seita.6G232300 Setaria italica HOM05M003655 ORTHO05M002765 1.7e-73 279.3 243 64.6
Sspon.05G0019420-3C Saccharum spontaneum HOM05M003655 ORTHO05M002765 2.9e-73 278.5 238 66.0
TRIDC5BG022280 Triticum dicoccoides HOM05M003655 ORTHO05M002765 1.1e-72 276.6 244 65.2
Dexi3A01G0003230 Digitaria exilis HOM05M003655 ORTHO05M002765 2.5e-72 275.4 239 67.8
Pahal.3G029501 Panicum hallii HOM05M003655 ORTHO05M002765 1.2e-71 273.1 242 65.7
AET5Gv20347100 Aegilops tauschii HOM05M003655 ORTHO05M002765 4.6e-71 271.2 244 64.3
TraesCS5D03G0342300 Triticum aestivum HOM05M003655 ORTHO05M002765 4.6e-71 271.2 244 64.3
GWHGAZTO065668 Oryza alta HOM05M003655 ORTHO05M002765 2.3e-70 268.9 253 60.9
TraesCS5B03G0346900 Triticum aestivum HOM05M003655 ORTHO05M002765 3.9e-70 268.1 244 64.8
Ot_Chr2_g10938 Oropetium thomaeum HOM05M003655 ORTHO05M002765 4.3e-69 264.6 242 62.0
Horvu_MOREX_5H01G229700 Hordeum vulgare HOM05M003655 ORTHO05M002765 1.3e-68 263.1 248 62.5
OsKitaake12g040900 Oryza sativa Kitaake HOM05M003655 ORTHO05M002765 1.8e-67 259.2 254 59.1
OsR498G1220959700.01 Oryza sativa ssp. indica HOM05M003655 ORTHO05M002765 1.8e-67 259.2 254 59.1
Os12g0153900 Oryza sativa ssp. japonica HOM05M003655 ORTHO05M002765 1.8e-67 259.2 254 59.1
Sevir.6G238600 Setaria viridis HOM05M003655 ORTHO05M002765 4.1e-67 258.1 228 64.5
Pahal.8G038500 Panicum hallii HOM05M003655 ORTHO05M002765 3.4e-66 255.0 253 62.5
Zm00001eb164210 Zea mays B73 HOM05M003655 ORTHO05M002765 1.0e-65 253.4 244 61.1
Zm00007a00038792 Zea mays B104 HOM05M003655 ORTHO05M002765 1.0e-65 253.4 244 61.1
Zm00001eb118620 Zea mays B73 HOM05M003655 ORTHO05M002765 1.7e-65 252.7 244 61.1
Zm00007a00021212 Zea mays B104 HOM05M003655 ORTHO05M002765 1.7e-65 252.7 244 61.1
Dexi8B01G0002870 Digitaria exilis HOM05M003655 ORTHO05M002765 4.2e-64 248.1 256 59.4
Sspon.05G0019420-1P Saccharum spontaneum HOM05M000271 ORTHO05M002765 1.2e-63 246.5 184 73.4
Dexi8A01G0003210 Digitaria exilis HOM05M003655 ORTHO05M002765 6.1e-63 244.2 255 59.2
GWHGAZTO013743 Oryza alta HOM05M003655 ORTHO05M002765 6.1e-63 244.2 231 62.3
GWHGASIY025312 Secale cereale HOM05M003655 ORTHO05M002765 1.8e-62 242.7 242 59.9
PH02Gene33892 Phyllostachys edulis HOM05M003655 ORTHO05M002765 5.1e-62 241.1 157 78.3
GWHGAORA040161 Cenchrus purpureus HOM05M003655 ORTHO05M002765 3.3e-61 238.4 251 57.8
Bradi4g42280 Brachypodium distachyon HOM05M003655 ORTHO05M002765 2.7e-55 218.8 252 56.3
Bradi4g25560 Brachypodium distachyon HOM05M003655 ORTHO05M002765 7.9e-55 217.2 256 53.9
V3.Lp_chr4_0G12524 Lolium perenne HOM05M003655 ORTHO05M002765 1.0e-54 216.9 172 69.2
PH02Gene39184 Phyllostachys edulis HOM05M003655 ORTHO05M002765 2.4e-51 205.7 130 80.0
TraesCS5A03G0357500 Triticum aestivum HOM05M003655 ORTHO05M002765 5.9e-50 201.1 179 62.6
OB11G12750 Oryza brachyantha HOM05M003655 ORTHO05M002765 4.7e-39 164.9 112 79.5
TRITD5Bv1G078660 Triticum turgidum HOM05M003655 ORTHO05M002765 1.4e-38 163.3 140 61.4
Aco016728 Ananas comosus HOM05M003655 ORTHO05M002765 4.0e-38 161.8 251 45.4
PH02Gene42145 Phyllostachys edulis HOM05M002174 ORTHO05M002144 1.7e-36 156.4 140 65.7
OB12G13260 Oryza brachyantha HOM05M003655 ORTHO05M002765 3.7e-36 155.2 124 70.2
DDU739G0549 Dioscorea dumetorum HOM05M003655 ORTHO05M002765 8.3e-36 154.1 238 45.8
p5.00_sc00182_p0080 Elaeis guineensis HOM05M003655 ORTHO05M002765 3.1e-35 152.1 251 45.4
CALSI_Maker00027582 Calamus simplicifolius HOM05M003655 ORTHO05M002765 4.5e-34 148.3 248 44.4
p5.00_sc01924_p0001 Elaeis guineensis HOM05M003655 ORTHO05M002765 2.5e-32 142.5 246 41.5
TRITD5Av1G097030 Triticum turgidum HOM05M003655 ORTHO05M002765 4.2e-32 141.7 98 70.4
CALSI_Maker00029833 Calamus simplicifolius HOM05M003655 ORTHO05M002765 1.1e-27 127.1 253 42.3
Ma09_g02490 Musa acuminata HOM05M003655 ORTHO05M002765 1.8e-27 126.3 236 41.5
Ma09_g02150 Musa acuminata HOM05M003655 ORTHO05M002765 7.7e-26 120.9 252 38.9
CALSI_Maker00011080 Calamus simplicifolius HOM05M003655 ORTHO05M002765 1.5e-24 116.7 230 39.6
DDU556G0248 Dioscorea dumetorum HOM05M003655 ORTHO05M002765 1.5e-24 116.7 245 39.6
Ma10_g03200 Musa acuminata HOM05M003655 ORTHO05M002765 8.9e-22 107.5 234 38.0
Spipo0G0004000 Spirodela polyrhiza HOM05M003655 ORTHO05M002765 1.5e-21 106.7 265 33.6
HPP92_006349 Vanilla planifolia HOM05M003655 ORTHO05M002765 2.0e-21 106.3 229 38.0
Zjn_sc00034.1.g06160.1.am.mk Zoysia japonica ssp. nagirizaki HOM05M008506 ORTHO05M002765 4.4e-21 105.1 231 36.4
Ma11_g24550 Musa acuminata HOM05M003655 ORTHO05M002765 2.8e-20 102.4 213 39.9
HPP92_011492 Vanilla planifolia HOM05M003655 ORTHO05M002765 1.1e-19 100.5 246 35.4
Sobic.003G364700 Sorghum bicolor HOM05M008506 ORTHO05M002765 1.8e-19 99.8 222 34.7
Ma05_g00850 Musa acuminata HOM05M003655 ORTHO05M002765 4.1e-19 98.6 232 36.6
Sspon.03G0002210-1A Saccharum spontaneum HOM05M008506 ORTHO05M002765 5.4e-19 98.2 224 34.8
Sspon.03G0002210-2D Saccharum spontaneum HOM05M008506 ORTHO05M002765 9.2e-19 97.4 222 36.0
Ot_Chr3_g12872 Oropetium thomaeum HOM05M008506 ORTHO05M002765 2.0e-18 96.3 227 34.8
Misin05G328700 Miscanthus sinensis HOM05M008506 ORTHO05M002765 3.5e-18 95.5 222 34.7
Aco007804 Ananas comosus HOM05M003655 ORTHO05M002765 1.7e-17 93.2 222 34.2
Asa8G04713 Allium sativum HOM05M003655 ORTHO05M002765 7.3e-16 87.8 265 35.8
Asa7G04435 Allium sativum HOM05M003655 ORTHO05M002765 2.1e-15 86.3 223 35.0
Pahal.5G081100 Panicum hallii HOM05M008506 ORTHO05M002765 3.6e-15 85.5 223 31.4
Horvu_MOREX_3H01G516300 Hordeum vulgare HOM05M008506 ORTHO05M002765 4.7e-15 85.1 159 36.5
GWHGAZTO006096 Oryza alta HOM05M008506 ORTHO05M002765 4.7e-15 85.1 156 39.1
Seita.5G390400 Setaria italica HOM05M008506 ORTHO05M002765 4.7e-15 85.1 234 32.5
Sevir.5G395600 Setaria viridis HOM05M008506 ORTHO05M002765 4.7e-15 85.1 234 32.5
Zm00001eb147090 Zea mays B73 HOM05M008506 ORTHO05M002765 8.0e-15 84.3 226 33.6
Bradi2g55697 Brachypodium distachyon HOM05M008506 ORTHO05M002765 1.4e-14 83.6 245 31.4
DDU879G0512 Dioscorea dumetorum HOM05M003655 ORTHO05M002765 1.4e-14 83.6 244 32.4
Asa7G04433 Allium sativum HOM05M003655 ORTHO05M002765 2.3e-14 82.8 228 33.3
AET3Gv20835300 Aegilops tauschii HOM05M008506 ORTHO05M002765 3.1e-14 82.4 158 37.3
DDU697G0010 Dioscorea dumetorum HOM05M003655 ORTHO05M002765 3.1e-14 82.4 246 31.7
GWHGASIY016762 Secale cereale HOM05M008506 ORTHO05M002765 3.1e-14 82.4 157 36.9
TraesCS3D03G0811800 Triticum aestivum HOM05M008506 ORTHO05M002765 3.1e-14 82.4 158 37.3
TraesCS3B03G1010900 Triticum aestivum HOM05M008506 ORTHO05M002765 4.0e-14 82.0 157 37.6
TRITD3Bv1G210330 Triticum turgidum HOM05M008506 ORTHO05M002765 4.0e-14 82.0 157 37.6
TraesCS3A03G0884700 Triticum aestivum HOM05M008506 ORTHO05M002765 6.8e-14 81.3 137 39.4
TRITD3Av1G219970 Triticum turgidum HOM05M008506 ORTHO05M002765 6.8e-14 81.3 137 39.4
Glyma.03G196500 Glycine max HOM05M003655 ORTHO05M002765 8.9e-14 80.9 262 30.2
GWHGAORA030838 Cenchrus purpureus HOM05M008506 ORTHO05M002765 1.5e-13 80.1 218 31.2
GWHGAZTO058407 Oryza alta HOM05M008506 ORTHO05M002765 1.5e-13 80.1 155 38.1
OsKitaake01g408000 Oryza sativa Kitaake HOM05M008506 ORTHO05M002765 2.0e-13 79.7 136 38.2
OsR498G0102381200.01 Oryza sativa ssp. indica HOM05M008506 ORTHO05M002765 2.0e-13 79.7 136 38.2
Spipo13G0003000 Spirodela polyrhiza HOM05M003655 ORTHO05M002765 4.4e-13 78.6 246 33.7
Glyma.19G194957 Glycine max HOM05M003655 ORTHO05M002765 9.8e-13 77.4 269 29.0
Ma02_g02900 Musa acuminata HOM05M003655 ORTHO05M002765 1.3e-12 77.0 234 30.8
Zm00001eb366850 Zea mays B73 HOM05M008506 ORTHO05M002765 2.9e-12 75.9 227 30.0
Zm00007a00010331 Zea mays B104 HOM05M008506 ORTHO05M002765 2.9e-12 75.9 227 30.0
Glyma.13G154300 Glycine max HOM05M003655 ORTHO05M002765 6.4e-12 74.7 264 29.5
Zm00007a00046579 Zea mays B104 HOM05M008506 ORTHO05M002765 6.4e-12 74.7 226 32.3
Potri.006G212800 Populus trichocarpa HOM05M008506 ORTHO05M002765 1.1e-11 73.9 254 28.7
Zosma01g33790 Zostera marina HOM05M003655 ORTHO05M002765 1.4e-11 73.6 201 31.3
Zosma02g02020 Zostera marina HOM05M003655 ORTHO05M002765 3.2e-11 72.4 153 37.3
Glyma.10G073600 Glycine max HOM05M003655 ORTHO05M002765 5.4e-11 71.6 137 39.4
Solyc10g083330.1 Solanum lycopersicum HOM05M003655 ORTHO05M002765 2.7e-10 69.3 240 29.2
Dexi5A01G0033240 Digitaria exilis HOM05M008506 ORTHO05M009575 4.6e-10 68.6 225 30.2
Aco031809 Ananas comosus HOM05M008506 ORTHO05M002765 1.0e-09 67.4 245 31.0
MBI11_g26446_MAGBIO Magnolia biondii HOM05M003655 ORTHO05M002765 1.7e-09 66.6 246 27.6
AT2G36220 Arabidopsis thaliana HOM05M003655 ORTHO05M002765 2.3e-09 66.2 234 33.3
GWHGAZTO070458 Oryza alta HOM05M010518 ORTHO05M012674 5.0e-09 65.1 154 36.4
Seita.1G181100 Setaria italica HOM05M010518 ORTHO05M012674 5.0e-09 65.1 139 36.7
Sevir.1G184100 Setaria viridis HOM05M010518 ORTHO05M012674 5.0e-09 65.1 139 36.7
Solyc09g009840.1 Solanum lycopersicum HOM05M003655 ORTHO05M002765 5.0e-09 65.1 242 31.0
Zm00001eb331720 Zea mays B73 HOM05M007004 ORTHO05M008899 6.6e-09 64.7 152 37.5
Zm00007a00034439 Zea mays B104 HOM05M007004 ORTHO05M008899 6.6e-09 64.7 152 37.5
Potri.016G079500 Populus trichocarpa HOM05M008506 ORTHO05M002765 8.6e-09 64.3 265 30.2
GWHGAORA061588 Cenchrus purpureus HOM05M009128 ORTHO05M011608 1.1e-08 63.9 260 28.1
TRIDC3BG060310 Triticum dicoccoides HOM05M008506 ORTHO05M002765 1.5e-08 63.5 152 32.2
PH02Gene47403 Phyllostachys edulis HOM05M009128 ORTHO05M012674 1.9e-08 63.2 133 38.3
Dexi5B01G0033410 Digitaria exilis HOM05M008506 ORTHO05M002765 5.6e-08 61.6 225 27.1
TRIDC3AG053650 Triticum dicoccoides HOM05M008506 ORTHO05M002765 7.3e-08 61.2 131 34.4
Misin12G071000 Miscanthus sinensis HOM05M009128 ORTHO05M011608 1.6e-07 60.1 232 28.4
Ot_Chr1_g11355 Oropetium thomaeum HOM05M010518 ORTHO05M012674 3.6e-07 58.9 148 37.2
Zjn_sc00020.1.g01800.1.am.mk Zoysia japonica ssp. nagirizaki HOM05M010518 ORTHO05M012674 6.2e-07 58.2 136 35.3
OsKitaake02g195400 Oryza sativa Kitaake HOM05M010518 ORTHO05M012674 8.0e-07 57.8 136 34.6
OsKitaake04g120600 Oryza sativa Kitaake HOM05M009128 ORTHO05M011608 8.0e-07 57.8 243 29.2
OsR498G0203999500.01 Oryza sativa ssp. indica HOM05M010518 ORTHO05M012674 8.0e-07 57.8 136 34.6
OsR498G0408527900.01 Oryza sativa ssp. indica HOM05M009128 ORTHO05M011608 8.0e-07 57.8 243 29.2
Os02g0533700 Oryza sativa ssp. japonica HOM05M010518 ORTHO05M012674 8.0e-07 57.8 136 34.6
Os04g0412700 Oryza sativa ssp. japonica HOM05M009128 ORTHO05M011608 8.0e-07 57.8 243 29.2
GWHGAZTO018833 Oryza alta HOM05M010518 ORTHO05M012674 1.4e-06 57.0 134 35.8
Seita.7G090600 Setaria italica HOM05M009128 ORTHO05M011608 2.3e-06 56.2 252 27.4
Bradi3g44945 Brachypodium distachyon HOM05M010518 ORTHO05M012674 3.1e-06 55.8 137 34.3
Sevir.7G098500 Setaria viridis HOM05M009128 ORTHO05M011608 4.0e-06 55.5 255 28.6
Pahal.1G255200 Panicum hallii HOM05M010518 ORTHO05M012674 5.2e-06 55.1 140 31.4
AT3G52710 Arabidopsis thaliana HOM05M003655 ORTHO05M002765 8.9e-06 54.3 250 27.6


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