Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Os11g0145700 Oryza sativa ssp. japonica HOM05M003176 ORTHO05M003917 9.4e-182 639.4 352 100.0
OsR498G1119406700.01 Oryza sativa ssp. indica HOM05M003176 ORTHO05M003917 8.0e-173 609.8 341 98.8
OsKitaake12g034200 Oryza sativa Kitaake HOM05M003176 ORTHO05M003917 8.0e-165 583.2 341 93.3
Os12g0143200 Oryza sativa ssp. japonica HOM05M003176 ORTHO05M003917 8.0e-165 583.2 341 93.3
OsR498G1220920500.01 Oryza sativa ssp. indica HOM05M003176 ORTHO05M003917 1.2e-163 579.3 341 90.6
OsKitaake11g029800 Oryza sativa Kitaake HOM05M003176 ORTHO05M003917 1.3e-154 549.3 288 97.9
Os11g0146500 Oryza sativa ssp. japonica HOM05M003176 ORTHO05M003917 1.3e-154 549.3 288 97.9
GWHGAZTO062617 Oryza alta HOM05M003176 ORTHO05M003917 4.0e-148 527.7 296 88.5
GWHGAZTO013657 Oryza alta HOM05M003176 ORTHO05M003917 2.9e-146 521.5 349 81.9
GWHGAZTO010421 Oryza alta HOM05M003176 ORTHO05M003917 8.1e-141 503.4 286 90.2
GWHGAZTO065588 Oryza alta HOM05M003176 ORTHO05M003917 6.6e-135 483.8 356 78.4
OB11G12270 Oryza brachyantha HOM05M003176 ORTHO05M003917 2.1e-109 399.1 205 91.2
EJB05_02224 Eragrostis curvula HOM05M003176 ORTHO05M003917 8.1e-109 397.1 305 67.2
EJB05_29544 Eragrostis curvula HOM05M003176 ORTHO05M003917 2.4e-108 395.6 356 62.4
EJB05_29550 Eragrostis curvula HOM05M003176 ORTHO05M003917 3.1e-108 395.2 352 63.1
PH02Gene44897 Phyllostachys edulis HOM05M003176 ORTHO05M003917 3.1e-108 395.2 343 66.2
TraesCS5B03G0364900 Triticum aestivum HOM05M003176 ORTHO05M003917 3.1e-108 395.2 338 65.4
TRITD5Bv1G083040 Triticum turgidum HOM05M003176 ORTHO05M003917 3.1e-108 395.2 338 65.4
AET5Gv20356800 Aegilops tauschii HOM05M003176 ORTHO05M003917 6.9e-108 394.0 351 63.2
TraesCS5D03G0353300 Triticum aestivum HOM05M003176 ORTHO05M003917 6.9e-108 394.0 351 63.2
GWHGASIY025356 Secale cereale HOM05M003176 ORTHO05M003917 1.5e-107 392.9 350 63.7
TRIDC5BG023440 Triticum dicoccoides HOM05M003176 ORTHO05M003917 2.0e-107 392.5 338 65.1
Horvu_MOREX_5H01G231700 Hordeum vulgare HOM05M003176 ORTHO05M003917 5.8e-107 391.0 350 61.1
TraesCS5A03G0374800 Triticum aestivum HOM05M003176 ORTHO05M003917 2.2e-106 389.0 351 61.0
TRIDC5AG022450 Triticum dicoccoides HOM05M003176 ORTHO05M003917 2.2e-106 389.0 351 61.0
OsKitaake11g029300 Oryza sativa Kitaake HOM05M003176 ORTHO05M003917 3.8e-106 388.3 240 98.8
GWHGAORA040451 Cenchrus purpureus HOM05M003176 ORTHO05M003917 7.1e-105 384.0 352 64.8
Seita.7G319300 Setaria italica HOM05M003176 ORTHO05M003917 9.3e-105 383.6 354 63.0
Sevir.7G329100 Setaria viridis HOM05M003176 ORTHO05M003917 9.3e-105 383.6 354 63.0
Pahal.3G023600 Panicum hallii HOM05M003176 ORTHO05M003917 6.7e-103 377.5 348 60.1
Sspon.05G0019750-1A Saccharum spontaneum HOM05M003176 ORTHO05M003917 8.2e-101 370.5 355 67.3
Pahal.8G027200 Panicum hallii HOM05M003176 ORTHO05M003917 1.8e-100 369.4 306 68.6
Seita.8G027600 Setaria italica HOM05M003176 ORTHO05M003917 2.0e-99 365.9 303 67.7
Sevir.8G029100 Setaria viridis HOM05M003176 ORTHO05M003917 2.0e-99 365.9 303 67.7
TraesCS5B03G0352100 Triticum aestivum HOM05M003176 ORTHO05M003917 3.4e-99 365.2 338 63.0
Dexi8B01G0002440 Digitaria exilis HOM05M003176 ORTHO05M003917 1.7e-98 362.8 353 60.1
Bradi4g42987 Brachypodium distachyon HOM05M003176 ORTHO05M003917 2.2e-98 362.5 360 62.5
Zm00001eb092900 Zea mays B73 HOM05M003176 ORTHO05M003917 6.5e-98 360.9 352 60.8
Ot_Chr2_g10978 Oropetium thomaeum HOM05M003176 ORTHO05M003917 7.1e-97 357.5 269 69.5
Misin09G020600 Miscanthus sinensis HOM05M003176 ORTHO05M003917 1.3e-95 353.2 356 64.0
Zm00007a00045749 Zea mays B104 HOM05M003176 ORTHO05M003917 1.8e-95 352.8 352 60.2
Dexi3B01G0002640 Digitaria exilis HOM05M003176 ORTHO05M003917 8.7e-95 350.5 294 64.3
Sobic.005G032400 Sorghum bicolor HOM05M003176 ORTHO05M003917 1.3e-93 346.7 298 65.4
Dexi3A01G0002560 Digitaria exilis HOM05M003176 ORTHO05M003917 2.0e-91 339.3 285 64.6
Misin10G017400 Miscanthus sinensis HOM05M003176 ORTHO05M003917 7.2e-89 330.9 240 67.5
Sspon.05G0019750-2B Saccharum spontaneum HOM05M003176 ORTHO05M003917 1.5e-86 323.2 342 58.8
GWHGAORA005514 Cenchrus purpureus HOM05M003176 ORTHO05M003917 6.3e-85 317.8 200 75.5
Zjn_sc00028.1.g02850.1.sm.mkhc Zoysia japonica ssp. nagirizaki HOM05M003176 ORTHO05M003917 8.2e-85 317.4 286 62.9
GWHGAORA010623 Cenchrus purpureus HOM05M003176 ORTHO05M003917 1.1e-84 317.0 199 74.4
GWHGAORA042936 Cenchrus purpureus HOM05M003176 ORTHO05M003917 1.8e-79 299.7 187 75.4
Zjn_sc00097.1.g01750.1.sm.mkhc Zoysia japonica ssp. nagirizaki HOM05M003176 ORTHO05M003917 2.2e-77 292.7 229 62.0
Zm00007a00002102 Zea mays B104 HOM05M006421 ORTHO05M008039 6.3e-77 291.2 193 71.0
Zm00007a00051444 Zea mays B104 HOM05M003176 ORTHO05M003917 1.5e-75 286.6 198 68.7
Zm00007a00032683 Zea mays B104 HOM05M003176 ORTHO05M003917 7.7e-75 284.3 186 71.0
Zm00001eb380670 Zea mays B73 HOM05M003176 ORTHO05M003917 5.0e-74 281.6 186 71.0
AT1G51450 Arabidopsis thaliana HOM05M003176 ORTHO05M003917 1.3e-69 266.9 230 57.0
Sobic.005G032500 Sorghum bicolor HOM05M003176 ORTHO05M003917 3.7e-69 265.4 185 65.9
Misin10G017500 Miscanthus sinensis HOM05M003176 ORTHO05M003917 2.4e-68 262.7 177 68.9
DDU272G0105 Dioscorea dumetorum HOM05M003176 ORTHO05M003917 4.5e-67 258.5 231 55.8
p5.00_sc00086_p0038 Elaeis guineensis HOM05M003176 ORTHO05M003917 4.5e-67 258.5 230 55.2
Potri.009G051400 Populus trichocarpa HOM05M003176 ORTHO05M003917 1.7e-66 256.5 232 55.2
CALSI_Maker00032823 Calamus simplicifolius HOM05M003176 ORTHO05M003917 8.5e-66 254.2 230 54.3
Potri.001G256000 Populus trichocarpa HOM05M003176 ORTHO05M003917 1.5e-65 253.4 231 54.5
HPP92_012324 Vanilla planifolia HOM05M003176 ORTHO05M003917 1.9e-65 253.1 232 52.6
p5.00_sc00009_p0233 Elaeis guineensis HOM05M003176 ORTHO05M003917 7.2e-65 251.1 192 60.9
Solyc11g065370.3 Solanum lycopersicum HOM05M003176 ORTHO05M003917 7.2e-65 251.1 231 53.2
MBI17_g23181_MAGBIO Magnolia biondii HOM05M003176 ORTHO05M003917 1.0e-63 247.3 189 61.4
Ma08_g08280 Musa acuminata HOM05M003176 ORTHO05M003917 1.4e-63 246.9 195 59.0
MBI19_g09239_MAGBIO Magnolia biondii HOM05M003176 ORTHO05M003917 1.8e-63 246.5 231 54.5
Aco000634 Ananas comosus HOM05M003176 ORTHO05M003917 2.3e-63 246.1 192 57.8
OB12G12760 Oryza brachyantha HOM05M003176 ORTHO05M003917 2.3e-63 246.1 117 92.3
Asa5G05833 Allium sativum HOM05M003176 ORTHO05M003917 4.0e-63 245.4 235 51.9
Zosma05g28090 Zostera marina HOM05M003176 ORTHO05M003917 2.6e-62 242.7 234 54.3
Glyma.11G093700 Glycine max HOM05M003176 ORTHO05M003917 3.4e-62 242.3 196 56.1
Glyma.12G020200 Glycine max HOM05M003176 ORTHO05M003917 4.4e-62 241.9 196 56.1
MisinT437100 Miscanthus sinensis HOM05M003176 ORTHO05M003917 6.3e-61 238.0 187 64.2
ATR0733G130 Amborella trichopoda HOM05M003176 ORTHO05M003917 1.2e-59 233.8 223 53.8
SEGI_00529 Sequoiadendron giganteum HOM05M003176 ORTHO05M003917 2.7e-59 232.6 240 50.4
Sobic.008G011400 Sorghum bicolor HOM05M003176 ORTHO05M003917 7.7e-59 231.1 339 48.1
Spipo22G0002300 Spirodela polyrhiza HOM05M003176 ORTHO05M003917 6.5e-58 228.0 176 59.7
Bradi4g39335 Brachypodium distachyon HOM05M003176 ORTHO05M003917 6.1e-56 221.5 233 54.1
Sspon.05G0019750-4D Saccharum spontaneum HOM05M003176 ORTHO05M003917 2.6e-54 216.1 147 69.4
SMO361G0750 Selaginella moellendorffii HOM05M003176 ORTHO05M003917 4.4e-54 215.3 176 58.0
Zm00001eb287480 Zea mays B73 HOM05M003176 ORTHO05M003917 1.4e-52 210.3 125 76.0
Zm00001eb115730 Zea mays B73 HOM05M003176 ORTHO05M003917 1.8e-52 209.9 124 76.6
DDU336G0019 Dioscorea dumetorum HOM05M003176 ORTHO05M003917 4.5e-51 205.3 231 48.5
Sspon.05G0019750-3C Saccharum spontaneum HOM05M003176 ORTHO05M003917 1.0e-50 204.1 177 57.6
Misin09G020700 Miscanthus sinensis HOM05M003176 ORTHO05M003917 1.1e-49 200.7 177 57.6
AagrBONN_evm.TU.Sc2ySwM_228.213 Anthoceros agrestis HOM05M003176 ORTHO05M003917 7.2e-49 198.0 228 46.9
HPP92_012392 Vanilla planifolia HOM05M003176 ORTHO05M003917 6.1e-48 194.9 147 59.2
Pp3c12_10080 Physcomitrium patens HOM05M003176 ORTHO05M003917 2.6e-46 189.5 232 44.0
CBR_g54630 Chara braunii HOM05M003176 ORTHO05M003917 2.9e-45 186.0 230 44.8
GWHGAZTO013663 Oryza alta HOM05M003176 ORTHO05M003917 1.1e-44 184.1 86 95.3
Mapoly0036s0095 Marchantia polymorpha HOM05M003176 ORTHO05M003917 1.4e-44 183.7 232 45.3
TRIDC5BG022540 Triticum dicoccoides HOM05M003176 ORTHO05M003917 2.4e-44 183.0 144 64.6
CBR_g19286 Chara braunii HOM05M003176 ORTHO05M003917 4.1e-44 182.2 197 46.2
GWHGAZTO010082 Oryza alta HOM05M003176 ORTHO05M003917 2.7e-43 179.5 179 70.4
GWHGAZTO032872 Oryza alta HOM05M003176 ORTHO05M003917 2.9e-42 176.0 127 81.1
GWHGAZTO026585 Oryza alta HOM05M003176 ORTHO05M003917 1.9e-41 173.3 181 67.4
CBR_g54627 Chara braunii HOM05M003176 ORTHO05M003917 3.1e-39 166.0 193 46.6
CDE02G1762 Ceratophyllum demersum HOM05M003176 ORTHO05M003917 2.6e-38 162.9 168 50.6
Cre16.g670250 Chlamydomonas reinhardtii HOM05M003176 ORTHO05M003917 1.3e-34 150.6 172 46.5
Pp3c23_9320 Physcomitrium patens HOM05M003176 ORTHO05M003917 5.0e-34 148.7 141 52.5
CDE06G0667 Ceratophyllum demersum HOM05M003145 ORTHO05M003851 4.7e-32 142.1 233 36.5
PRCOL_00001849 Prasinoderma coloniale HOM05M003176 ORTHO05M003917 1.4e-31 140.6 158 45.6
CDE02G2983 Ceratophyllum demersum HOM05M003176 ORTHO05M003917 3.7e-29 132.5 222 37.4
EJB05_29569 Eragrostis curvula HOM05M003176 ORTHO05M003917 1.9e-17 93.6 174 36.2
Misin15G000800 Miscanthus sinensis HOM05M003176 ORTHO05M003917 1.9e-17 93.6 255 32.9
p5.00_sc00414_p0005 Elaeis guineensis HOM05M003176 ORTHO05M003917 9.6e-17 91.3 66 59.1
p5.00_sc00127_p0002 Elaeis guineensis HOM05M003176 ORTHO05M003917 4.0e-15 85.9 72 51.4
p5.00_sc01094_p0001 Elaeis guineensis HOM05M003176 ORTHO05M003917 3.4e-14 82.8 102 43.1
CDE06G1612 Ceratophyllum demersum HOM05M003176 ORTHO05M003917 1.3e-13 80.9 232 27.6
GWHGAZTO003152 Oryza alta HOM05M003176 ORTHO05M167932 8.4e-13 78.2 42 90.5
Sobic.008G011500 Sorghum bicolor HOM05M003176 ORTHO05M003917 1.1e-12 77.8 168 35.7
p5.00_sc00021_p0016 Elaeis guineensis HOM05M003176 ORTHO05M003917 8.7e-10 68.2 53 56.6
PRCOL_00003402 Prasinoderma coloniale HOM05M003176 ORTHO05M225908 9.9e-06 54.7 66 39.4


User provided reference genes

Program Settings