Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Os11g0120725 Oryza sativa ssp. japonica HOM05M003127 ORTHO05M003516 1.5e-86 322.0 157 100.0
OsKitaake11g011301 Oryza sativa Kitaake HOM05M003127 ORTHO05M003516 9.6e-86 319.3 157 99.4
GWHGAZTO013446 Oryza alta HOM05M003127 ORTHO05M003516 2.0e-67 258.5 157 82.8
OB12G11260 Oryza brachyantha HOM05M003127 ORTHO05M003516 7.7e-67 256.5 155 81.3
GWHGAZTO062456 Oryza alta HOM05M003127 ORTHO05M003516 3.8e-66 254.2 157 80.3
OsKitaake12g015700 Oryza sativa Kitaake HOM05M003127 ORTHO05M003516 1.4e-60 235.7 157 78.3
TraesCS5B03G0398800 Triticum aestivum HOM05M003127 ORTHO05M003516 2.1e-56 221.9 155 67.7
TraesCS5D03G0368300 Triticum aestivum HOM05M003127 ORTHO05M003516 2.1e-56 221.9 155 67.7
TRITD5Bv1G091790 Triticum turgidum HOM05M003127 ORTHO05M003516 1.8e-55 218.8 154 67.5
Seita.7G304700 Setaria italica HOM05M003127 ORTHO05M003516 5.1e-55 217.2 154 66.9
Pahal.3G011000 Panicum hallii HOM05M003127 ORTHO05M003516 2.0e-54 215.3 153 66.7
OsKitaake12g015500 Oryza sativa Kitaake HOM05M003127 ORTHO05M003516 3.3e-54 214.5 153 67.3
TraesCS4A03G0513100 Triticum aestivum HOM05M003127 ORTHO05M003516 7.4e-54 213.4 154 65.6
TRITD4Av1G154860 Triticum turgidum HOM05M003127 ORTHO05M003516 7.4e-54 213.4 154 65.6
OsKitaake11g011100 Oryza sativa Kitaake HOM05M003127 ORTHO05M003516 2.2e-53 211.8 153 66.0
Os11g0120600 Oryza sativa ssp. japonica HOM05M003127 ORTHO05M003516 2.2e-53 211.8 153 66.0
TRITD4Bv1G051070 Triticum turgidum HOM05M003127 ORTHO05M003516 2.4e-52 208.4 153 63.4
GWHGAZTO013444 Oryza alta HOM05M003127 ORTHO05M003516 1.2e-51 206.1 155 63.9
GWHGAZTO065429 Oryza alta HOM05M003127 ORTHO05M003516 2.0e-51 205.3 153 65.4
OB11G11000 Oryza brachyantha HOM05M003127 ORTHO05M003516 2.6e-51 204.9 153 66.0
PH02Gene49597 Phyllostachys edulis HOM05M003127 ORTHO05M003516 2.6e-51 204.9 146 67.1
OB12G11230 Oryza brachyantha HOM05M003127 ORTHO05M003516 1.0e-50 203.0 153 65.4
Horvu_MOREX_5H01G251500 Hordeum vulgare HOM05M003127 ORTHO05M003516 3.8e-50 201.1 159 61.6
Ot_Chr2_g22111 Oropetium thomaeum HOM05M003127 ORTHO05M003516 5.0e-50 200.7 153 64.7
TraesCS4B03G0285800 Triticum aestivum HOM05M003127 ORTHO05M003516 1.9e-49 198.7 160 60.0
GWHGAZTO010217 Oryza alta HOM05M003127 ORTHO05M003516 4.2e-49 197.6 181 56.4
Dexi3A01G0001150 Digitaria exilis HOM05M003127 ORTHO05M003516 5.5e-49 197.2 154 63.0
GWHGAZTO062455 Oryza alta HOM05M003127 ORTHO05M003516 5.5e-49 197.2 191 52.9
GWHGAORA043074 Cenchrus purpureus HOM05M003127 ORTHO05M003516 1.2e-48 196.1 165 59.4
EJB05_02018 Eragrostis curvula HOM05M003127 ORTHO05M003516 2.1e-48 195.3 167 60.5
GWHGASIY025463 Secale cereale HOM05M003127 ORTHO05M003516 4.7e-48 194.1 155 61.9
GWHGAORA010746 Cenchrus purpureus HOM05M003127 ORTHO05M003516 1.0e-47 193.0 160 59.4
GWHGAORA040272 Cenchrus purpureus HOM05M003127 ORTHO05M003516 1.8e-47 192.2 165 57.6
Ma11_g06240 Musa acuminata HOM05M003127 ORTHO05M003516 1.8e-47 192.2 153 62.1
Seita.8G009900 Setaria italica HOM05M003127 ORTHO05M003516 2.3e-47 191.8 155 61.9
Dexi8B01G0001100 Digitaria exilis HOM05M003127 ORTHO05M003516 1.1e-46 189.5 158 61.4
Sspon.07G0017370-1A Saccharum spontaneum HOM05M003127 ORTHO05M003516 2.0e-46 188.7 177 55.9
p5.00_sc00015_p0081 Elaeis guineensis HOM05M003127 ORTHO05M003516 5.7e-46 187.2 160 60.0
GWHGASIY043107 Secale cereale HOM05M003127 ORTHO05M003516 5.7e-46 187.2 160 58.1
Glyma.18G049100 Glycine max HOM05M003127 ORTHO05M003516 7.5e-46 186.8 156 56.4
GWHGASIY019373 Secale cereale HOM05M003127 ORTHO05M003516 7.5e-46 186.8 160 58.1
GWHGAZTO010219 Oryza alta HOM05M003127 ORTHO05M003516 9.7e-46 186.4 122 73.8
Spipo3G0010300 Spirodela polyrhiza HOM05M003127 ORTHO05M003516 9.7e-46 186.4 153 59.5
AT5G58240 Arabidopsis thaliana HOM05M003127 ORTHO05M003516 2.2e-45 185.3 153 56.2
SEGI_00344 Sequoiadendron giganteum HOM05M003127 ORTHO05M003516 6.3e-45 183.7 151 58.9
Bradi4g25998 Brachypodium distachyon HOM05M003127 ORTHO05M003516 8.2e-45 183.3 171 55.6
EJB05_29843 Eragrostis curvula HOM05M003127 ORTHO05M003516 8.2e-45 183.3 149 60.4
V3.Lp_chr4_0G12740 Lolium perenne HOM05M003127 ORTHO05M003516 8.2e-45 183.3 177 54.2
Sobic.008G024800 Sorghum bicolor HOM05M003127 ORTHO05M003516 1.8e-44 182.2 190 52.1
Aco000581 Ananas comosus HOM05M003127 ORTHO05M003516 4.1e-44 181.0 187 52.4
Misin14G048700 Miscanthus sinensis HOM05M003127 ORTHO05M003516 4.1e-44 181.0 203 49.3
Zm00001eb265500 Zea mays B73 HOM05M003127 ORTHO05M003516 4.1e-44 181.0 158 58.9
Zm00007a00046251 Zea mays B104 HOM05M003127 ORTHO05M003516 4.1e-44 181.0 158 58.9
OsR498G1119336300.01 Oryza sativa ssp. indica HOM05M003127 ORTHO05M003516 1.2e-43 179.5 91 97.8
Zosma06g10510 Zostera marina HOM05M003127 ORTHO05M003516 2.7e-43 178.3 153 58.2
AagrBONN_evm.TU.Sc2ySwM_228.3513 Anthoceros agrestis HOM05M003127 ORTHO05M003516 6.5e-42 173.7 158 56.3
CALSI_Maker00029037 Calamus simplicifolius HOM05M003127 ORTHO05M003516 1.5e-41 172.6 153 58.8
p5.00_sc00003_p0361 Elaeis guineensis HOM05M003127 ORTHO05M003516 2.5e-41 171.8 153 58.2
Sspon.07G0028770-1B Saccharum spontaneum HOM05M003127 ORTHO05M003516 3.2e-41 171.4 179 50.3
EJB05_29829 Eragrostis curvula HOM05M003127 ORTHO05M003516 4.7e-40 167.5 118 71.2
MBI03_g31633_MAGBIO Magnolia biondii HOM05M003127 ORTHO05M003516 2.3e-39 165.2 153 53.6
MCO06G292 Micromonas commoda HOM05M003127 ORTHO05M003516 2.3e-39 165.2 153 52.9
TraesCS5A03G0401900 Triticum aestivum HOM05M003127 ORTHO05M003516 2.6e-38 161.8 155 53.5
CALSI_Maker00029702 Calamus simplicifolius HOM05M003127 ORTHO05M003516 5.7e-38 160.6 166 51.8
Asa0G02957 Allium sativum HOM05M003127 ORTHO05M003516 9.8e-38 159.8 122 63.1
MisinT399200 Miscanthus sinensis HOM05M003127 ORTHO05M003516 9.8e-38 159.8 114 70.2
Os12g0120400 Oryza sativa ssp. japonica HOM05M003127 ORTHO05M003516 9.8e-38 159.8 82 90.2
DDU330G0032 Dioscorea dumetorum HOM05M003127 ORTHO05M003516 1.3e-37 159.5 176 50.0
DDU477G0232 Dioscorea dumetorum HOM05M003127 ORTHO05M003516 1.3e-37 159.5 176 50.0
Glyma.11G201800 Glycine max HOM05M003127 ORTHO05M003516 1.3e-37 159.5 148 55.4
Glyma.18G049000 Glycine max HOM05M003127 ORTHO05M003516 2.2e-37 158.7 150 56.0
Misin19G049300 Miscanthus sinensis HOM05M003127 ORTHO05M003516 2.2e-37 158.7 114 69.3
Bradi4g44190 Brachypodium distachyon HOM05M003127 ORTHO05M003516 2.8e-37 158.3 114 68.4
Sspon.07G0017370-2C Saccharum spontaneum HOM05M003127 ORTHO05M003516 6.3e-37 157.1 152 54.6
SMO351G0049 Selaginella moellendorffii HOM05M003127 ORTHO05M003516 6.3e-37 157.1 156 51.3
Cre17.g698266 Chlamydomonas reinhardtii HOM05M003127 ORTHO05M003516 3.1e-36 154.8 165 49.1
SMO163G0095 Selaginella moellendorffii HOM05M003127 ORTHO05M003516 3.1e-36 154.8 172 47.7
CBR_g39157 Chara braunii HOM05M003127 ORTHO05M003516 5.4e-36 154.1 151 53.6
PRCOL_00000589 Prasinoderma coloniale HOM05M003127 ORTHO05M003516 1.6e-35 152.5 154 51.9
HPP92_015444 Vanilla planifolia HOM05M003127 ORTHO05M003516 2.7e-35 151.8 119 61.3
Potri.013G161100 Populus trichocarpa HOM05M003127 ORTHO05M003516 4.5e-35 151.0 121 62.0
CBR_g3497 Chara braunii HOM05M005709 ORTHO05M006984 1.7e-34 149.1 158 49.4
Dexi3B01G0001260 Digitaria exilis HOM05M003127 ORTHO05M003516 6.5e-34 147.1 153 51.0
Asa3G01431 Allium sativum HOM05M003127 ORTHO05M003516 8.5e-34 146.7 112 63.4
V3.Lp_chr5_0G8630 Lolium perenne HOM05M003127 ORTHO05M003516 2.1e-32 142.1 155 49.7
Potri.019G133200 Populus trichocarpa HOM05M003127 ORTHO05M003516 1.5e-30 136.0 110 59.1
evm.TU.AsparagusV1_02.1352.V1.1 Asparagus officinalis HOM05M003127 ORTHO05M003516 4.4e-30 134.4 156 46.8
Ma11_g06220 Musa acuminata HOM05M003127 ORTHO05M003516 4.4e-30 134.4 121 59.5
ATR0743G223 Amborella trichopoda HOM05M003127 ORTHO05M003516 9.8e-30 133.3 113 58.4
GWHGAORA043082 Cenchrus purpureus HOM05M003127 ORTHO05M003516 1.7e-29 132.5 143 53.1
CDE08G1523 Ceratophyllum demersum HOM05M003127 ORTHO05M003516 1.7e-29 132.5 114 57.0
Misin19G048800 Miscanthus sinensis HOM05M003127 ORTHO05M003516 2.8e-29 131.7 151 51.0
Pp3c4_3210 Physcomitrium patens HOM05M003127 ORTHO05M003516 1.1e-28 129.8 121 52.1
Dexi8A01G0001120 Digitaria exilis HOM05M003127 ORTHO05M003516 1.1e-25 119.8 158 44.3
CALSI_Maker00045317 Calamus simplicifolius HOM05M003127 ORTHO05M003516 3.4e-22 108.2 101 52.5
GWHGAZTO050256 Oryza alta HOM05M003127 ORTHO05M003516 4.4e-22 107.8 122 43.4
EJB05_29844 Eragrostis curvula HOM05M003127 ORTHO05M003516 2.4e-20 102.1 74 70.3
Pahal.8G011832 Panicum hallii HOM05M003127 ORTHO05M003516 3.0e-18 95.1 75 64.0
GWHGAORA005648 Cenchrus purpureus HOM05M003127 ORTHO05M003516 2.1e-16 89.0 161 34.8
MBI03_g31635_MAGBIO Magnolia biondii HOM05M003127 ORTHO05M003516 3.1e-15 85.1 72 61.1
MBI03_g31636_MAGBIO Magnolia biondii HOM05M003127 ORTHO05M003516 6.4e-13 77.4 73 56.2
Os09g0246250 Oryza sativa ssp. japonica HOM05M003127 ORTHO05M003516 2.4e-12 75.5 49 57.1
Solyc09g018630.3 Solanum lycopersicum HOM05M003127 ORTHO05M003516 7.0e-12 73.9 47 66.0
OB11G11030 Oryza brachyantha HOM05M003127 ORTHO05M003516 2.0e-11 72.4 43 74.4
OsR498G1119335700.01 Oryza sativa ssp. indica HOM05M003127 ORTHO05M003516 2.6e-06 55.5 49 51.0
Sevir.8G009125 Setaria viridis HOM05M003127 ORTHO05M003516 7.5e-06 53.9 41 51.2
AET5Gv20377200 Aegilops tauschii HOM05M003127 ORTHO05M003516 9.8e-06 53.5 37 56.8
TRIDC5AG024310 Triticum dicoccoides HOM05M003127 ORTHO05M003516 9.8e-06 53.5 37 56.8
TRIDC5BG025530 Triticum dicoccoides HOM05M003127 ORTHO05M003516 9.8e-06 53.5 37 56.8


User provided reference genes

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