Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Os11g0102700 Oryza sativa ssp. japonica HOM05M003954 ORTHO05M005585 1.7e-137 491.9 241 100.0
OsR498G1119278000.01 Oryza sativa ssp. indica HOM05M003954 ORTHO05M005585 2.4e-136 488.0 239 100.0
OsKitaake12g001700 Oryza sativa Kitaake HOM05M003954 ORTHO05M005585 5.0e-134 480.3 241 98.3
Os12g0102350 Oryza sativa ssp. japonica HOM05M003954 ORTHO05M005585 5.0e-134 480.3 241 98.3
OsR498G1220788600.01 Oryza sativa ssp. indica HOM05M003954 ORTHO05M005585 8.8e-131 469.5 241 97.1
OB0102G10020 Oryza brachyantha HOM05M003954 ORTHO05M005585 1.5e-98 362.5 214 84.6
Sspon.06G0009090-2D Saccharum spontaneum HOM05M003954 ORTHO05M005585 1.2e-87 326.2 250 68.8
Sspon.06G0009090-1A Saccharum spontaneum HOM05M003954 ORTHO05M005585 7.8e-87 323.6 241 69.7
Sobic.007G077532 Sorghum bicolor HOM05M003954 ORTHO05M005585 3.9e-86 321.2 240 70.0
TraesCS5A03G0427700 Triticum aestivum HOM05M003954 ORTHO05M005585 3.9e-86 321.2 235 69.8
TRITD5Av1G116890 Triticum turgidum HOM05M003954 ORTHO05M005585 3.9e-86 321.2 235 69.8
Misin13G053200 Miscanthus sinensis HOM05M003954 ORTHO05M005585 8.7e-86 320.1 239 69.5
Misin07G139400 Miscanthus sinensis HOM05M003954 ORTHO05M005585 2.5e-85 318.5 245 68.6
TraesCS5B03G0423300 Triticum aestivum HOM05M003954 ORTHO05M005585 3.3e-85 318.2 235 69.4
TraesCS5D03G0396400 Triticum aestivum HOM05M003954 ORTHO05M005585 3.3e-85 318.2 235 69.8
TRITD5Bv1G096060 Triticum turgidum HOM05M003954 ORTHO05M005585 3.3e-85 318.2 235 69.4
GWHGAZTO062302 Oryza alta HOM05M003954 ORTHO05M005585 5.6e-85 317.4 238 73.1
TRIDC5BG027150 Triticum dicoccoides HOM05M003954 ORTHO05M005585 9.6e-85 316.6 235 68.9
Horvu_MOREX_5H01G268400 Hordeum vulgare HOM05M003954 ORTHO05M005585 2.8e-84 315.1 235 68.5
Pahal.6G272100 Panicum hallii HOM05M003954 ORTHO05M005585 8.1e-84 313.5 243 67.5
EJB05_09601 Eragrostis curvula HOM05M003954 ORTHO05M005585 3.1e-83 311.6 241 66.8
GWHGAORA037017 Cenchrus purpureus HOM05M003954 ORTHO05M005585 5.3e-83 310.8 241 66.8
Zm00001eb413910 Zea mays B73 HOM05M003954 ORTHO05M005585 1.5e-82 309.3 236 69.1
Zm00007a00048096 Zea mays B104 HOM05M003954 ORTHO05M005585 1.5e-82 309.3 236 69.1
GWHGAORA012061 Cenchrus purpureus HOM05M003954 ORTHO05M005585 2.6e-82 308.5 241 67.6
Dexi6A01G0019020 Digitaria exilis HOM05M003954 ORTHO05M005585 1.7e-81 305.8 243 66.7
Sevir.6G225400 Setaria viridis HOM05M003954 ORTHO05M005585 8.4e-81 303.5 241 66.0
V3.Lp_scaffold_7385G4 Lolium perenne HOM05M003954 ORTHO05M005585 5.4e-80 300.8 233 67.8
GWHGAORA037045 Cenchrus purpureus HOM05M003954 ORTHO05M005585 7.1e-80 300.4 243 65.0
Zjn_sc00112.1.g00470.1.sm.mk Zoysia japonica ssp. nagirizaki HOM05M003954 ORTHO05M005585 1.8e-75 285.8 241 63.5
Ot_Chr9_g14047 Oropetium thomaeum HOM05M003954 ORTHO05M005585 3.1e-75 285.0 232 66.8
Bradi4g45245 Brachypodium distachyon HOM05M003954 ORTHO05M005585 1.1e-69 266.5 229 64.6
Dexi3A01G0012170 Digitaria exilis HOM05M003954 ORTHO05M005585 1.3e-68 263.1 237 59.1
Dexi3B01G0012240 Digitaria exilis HOM05M003954 ORTHO05M005585 2.8e-68 261.9 237 59.1
Misin13G053700 Miscanthus sinensis HOM05M003954 ORTHO05M005585 3.4e-66 255.0 190 72.1
Sspon.06G0029790-1C Saccharum spontaneum HOM05M003954 ORTHO05M005585 6.7e-62 240.7 240 57.1
Os12g0127600 Oryza sativa ssp. japonica HOM05M003954 ORTHO05M005585 5.3e-51 204.5 231 50.6
OsKitaake12g020500 Oryza sativa Kitaake HOM05M003954 ORTHO05M005585 1.5e-50 203.0 230 50.4
Ma09_g18980 Musa acuminata HOM05M003954 ORTHO05M005585 1.2e-47 193.4 223 47.1
OB12G10150 Oryza brachyantha HOM05M003954 ORTHO05M005585 2.7e-47 192.2 122 79.5
Dexi8A01G0001660 Digitaria exilis HOM05M003954 ORTHO05M005585 3.3e-45 185.3 219 51.1
Aco014245 Ananas comosus HOM05M003954 ORTHO05M005585 7.4e-45 184.1 233 42.5
Zosma01g00150 Zostera marina HOM05M003954 ORTHO05M005585 5.3e-43 177.9 224 42.9
DDU550G0695 Dioscorea dumetorum HOM05M003954 ORTHO05M005585 3.4e-42 175.3 225 41.3
Glyma.12G072600 Glycine max HOM05M003954 ORTHO05M005585 1.3e-41 173.3 228 43.4
Misin11G195300 Miscanthus sinensis HOM05M003954 ORTHO05M005585 6.5e-41 171.0 163 63.2
OsKitaake12g001912 Oryza sativa Kitaake HOM05M003954 ORTHO05M005585 8.5e-41 170.6 241 47.3
Potri.013G002700 Populus trichocarpa HOM05M003954 ORTHO05M005585 1.9e-40 169.5 244 41.0
CALSI_Maker00038462 Calamus simplicifolius HOM05M003954 ORTHO05M005585 3.2e-40 168.7 222 41.9
Spipo30G0001300 Spirodela polyrhiza HOM05M003954 ORTHO05M005585 3.2e-40 168.7 230 41.3
SEGI_39191 Sequoiadendron giganteum HOM05M003954 ORTHO05M005585 1.6e-39 166.4 222 42.3
AT5G60190 Arabidopsis thaliana HOM05M003954 ORTHO05M005585 6.1e-39 164.5 231 42.0
ATR0069G023 Amborella trichopoda HOM05M003954 ORTHO05M005585 3.0e-38 162.2 225 41.8
OsKitaake12g002700 Oryza sativa Kitaake HOM05M003954 ORTHO05M005585 8.8e-38 160.6 241 40.7
Os12g0103580 Oryza sativa ssp. japonica HOM05M003954 ORTHO05M005585 8.8e-38 160.6 241 40.7
Sobic.003G354700 Sorghum bicolor HOM05M003954 ORTHO05M005585 8.8e-38 160.6 217 43.8
Mapoly0009s0037 Marchantia polymorpha HOM05M003954 ORTHO05M005585 3.7e-36 155.2 237 36.7
AagrBONN_evm.TU.Sc2ySwM_344.2535 Anthoceros agrestis HOM05M003954 ORTHO05M005585 2.4e-35 152.5 224 40.2
Pahal.5G354401 Panicum hallii HOM05M003954 ORTHO05M005585 1.0e-33 147.1 150 57.3
Ot_Chr2_gn32777 Oropetium thomaeum HOM05M003954 ORTHO05M005585 1.9e-32 142.9 179 45.3
GWHGAZTO010057 Oryza alta HOM05M003954 ORTHO05M005585 2.5e-32 142.5 159 57.9
EJB05_09159 Eragrostis curvula HOM05M003954 ORTHO05M005585 1.6e-31 139.8 116 65.5
Bradi4g25494 Brachypodium distachyon HOM05M003954 ORTHO05M005585 2.7e-31 139.0 181 42.5
EJB05_09162 Eragrostis curvula HOM05M003954 ORTHO05M005585 3.6e-31 138.7 127 54.3
Sevir.8G058600 Setaria viridis HOM05M003954 ORTHO05M005585 3.0e-30 135.6 237 38.0
Cre01.g055050 Chlamydomonas reinhardtii HOM05M003954 ORTHO05M005585 8.8e-30 134.0 216 40.7
Asa2G04630 Allium sativum HOM05M003954 ORTHO05M005585 4.4e-29 131.7 222 34.2
Asa2G04634 Allium sativum HOM05M003954 ORTHO05M005585 4.4e-29 131.7 222 34.2
Ot_Chr2_gn33440 Oropetium thomaeum HOM05M003954 ORTHO05M005585 4.4e-29 131.7 186 43.0
AET7Gv20505500 Aegilops tauschii HOM05M003954 ORTHO05M005585 9.7e-29 130.6 227 37.0
TraesCS7D03G0447700 Triticum aestivum HOM05M003954 ORTHO05M005585 9.7e-29 130.6 227 37.0
Sobic.008G165401 Sorghum bicolor HOM05M003954 ORTHO05M014236 5.3e-27 124.8 206 34.5
Pp3c21_14830 Physcomitrium patens HOM05M003954 ORTHO05M005585 7.0e-27 124.4 231 35.5
GWHGAZTO049178 Oryza alta HOM05M010504 ORTHO05M020075 2.0e-26 122.9 210 37.1
MCO07G761 Micromonas commoda HOM05M003954 ORTHO05M005585 4.5e-26 121.7 224 33.9
SMO367G1171 Selaginella moellendorffii HOM05M002422 ORTHO05M002930 4.5e-26 121.7 205 38.0
AET4Gv20792900 Aegilops tauschii HOM05M003954 ORTHO05M020520 2.9e-25 119.0 194 34.5
CBR_g4323 Chara braunii HOM05M003954 ORTHO05M005585 8.5e-25 117.5 233 34.3
Solyc05g005310.3 Solanum lycopersicum HOM05M003954 ORTHO05M005585 1.2e-23 113.6 154 42.2
Ot_Chr2_gn32776 Oropetium thomaeum HOM05M003954 ORTHO05M005585 6.1e-23 111.3 147 44.2
TraesCS5A03G1192100 Triticum aestivum HOM05M003954 ORTHO05M020520 6.1e-23 111.3 218 32.6
TRIDC5AG072310 Triticum dicoccoides HOM05M003954 ORTHO05M020520 6.1e-23 111.3 218 32.6
GWHGAORA065328 Cenchrus purpureus HOM05M003954 ORTHO05M014236 1.8e-22 109.8 206 32.5
TRIDC4BG056820 Triticum dicoccoides HOM05M003954 ORTHO05M020520 3.0e-22 109.0 195 33.3
CDE04G2448 Ceratophyllum demersum HOM05M003954 ORTHO05M005585 5.2e-22 108.2 158 36.7
GWHGAORA030981 Cenchrus purpureus HOM05M003954 ORTHO05M005585 9.8e-21 104.0 200 33.0
Seita.5G009800 Setaria italica HOM05M003954 ORTHO05M005585 1.4e-19 100.1 130 45.4
GWHGAZTO095802 Oryza alta HOM05M010504 ORTHO05M020075 3.5e-18 95.5 196 33.7
EJB05_18588 Eragrostis curvula HOM05M003954 ORTHO05M013801 2.9e-17 92.4 212 32.5
Pahal.8G017100 Panicum hallii HOM05M003954 ORTHO05M005585 2.9e-17 92.4 88 55.7
Sevir.5G009900 Setaria viridis HOM05M003954 ORTHO05M005585 1.1e-16 90.5 99 45.5
Dexi5B01G0037840 Digitaria exilis HOM05M003954 ORTHO05M005585 2.5e-16 89.4 72 54.2
TRIDC3AG056850 Triticum dicoccoides HOM05M003954 ORTHO05M005585 3.2e-16 89.0 211 32.2
PRCOL_00006943 Prasinoderma coloniale HOM05M004253 ORTHO05M006886 5.5e-16 88.2 198 33.3
GWHGAZTO013583 Oryza alta HOM05M011667 ORTHO05M014089 2.3e-14 82.8 168 36.3
GWHGAZTO065272 Oryza alta HOM05M003954 ORTHO05M005585 9.8e-13 77.4 38 92.1
OsKitaake01g442201 Oryza sativa Kitaake HOM05M003954 ORTHO05M188784 8.3e-12 74.3 51 80.4
Pahal.5G093100 Panicum hallii HOM05M003954 ORTHO05M005585 2.7e-10 69.3 117 33.3
GWHGAZTO049145 Oryza alta HOM05M010504 ORTHO05M014236 6.8e-06 54.7 159 29.6


User provided reference genes

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