Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Misin08G274700 Miscanthus sinensis HOM05M002838 ORTHO05M003580 7.1e-71 270.0 167 100.0
Sspon.08G0021920-1P Saccharum spontaneum HOM05M002838 ORTHO05M003580 6.0e-70 266.9 167 97.6
Sspon.08G0021920-2P Saccharum spontaneum HOM05M002838 ORTHO05M003580 1.8e-69 265.4 167 97.0
Misin07G482700 Miscanthus sinensis HOM05M002838 ORTHO05M003580 4.8e-67 257.3 167 94.0
Sobic.004G241100 Sorghum bicolor HOM05M002838 ORTHO05M003580 8.1e-67 256.5 168 94.0
Pahal.1G382400 Panicum hallii HOM05M002838 ORTHO05M003580 1.3e-64 249.2 174 89.1
Sevir.1G323400 Setaria viridis HOM05M002838 ORTHO05M003580 1.6e-62 242.3 176 88.1
Zm00007a00013371 Zea mays B104 HOM05M002838 ORTHO05M003580 2.1e-62 241.9 178 90.4
Zm00001eb254350 Zea mays B73 HOM05M002838 ORTHO05M003580 3.5e-62 241.1 180 89.4
Dexi1B01G0025990 Digitaria exilis HOM05M002838 ORTHO05M003580 3.0e-61 238.0 176 75.0
Dexi1A01G0029490 Digitaria exilis HOM05M002838 ORTHO05M003580 1.3e-59 232.6 176 71.0
Zjn_sc00007.1.g05070.1.am.mk Zoysia japonica ssp. nagirizaki HOM05M002838 ORTHO05M003580 4.8e-59 230.7 172 72.1
Seita.1G317300 Setaria italica HOM05M002838 ORTHO05M003580 2.4e-58 228.4 176 71.0
EJB05_20002 Eragrostis curvula HOM05M002838 ORTHO05M003580 1.2e-57 226.1 172 77.9
EJB05_20003 Eragrostis curvula HOM05M002838 ORTHO05M003580 3.4e-57 224.6 172 77.3
GWHGAZTO072360 Oryza alta HOM05M002838 ORTHO05M003580 5.9e-57 223.8 172 70.3
Ot_Chr1_g04174 Oropetium thomaeum HOM05M002838 ORTHO05M003580 4.6e-54 214.2 118 89.8
GWHGAORA060708 Cenchrus purpureus HOM05M002838 ORTHO05M003580 5.1e-53 210.7 120 87.5
OsR498G0204753800.01 Oryza sativa ssp. indica HOM05M002838 ORTHO05M003580 5.7e-52 207.2 120 87.5
OsKitaake02g330100 Oryza sativa Kitaake HOM05M002838 ORTHO05M003580 1.3e-51 206.1 123 85.4
Os02g0743200 Oryza sativa ssp. japonica HOM05M002838 ORTHO05M003580 1.3e-51 206.1 123 85.4
Sspon.04G0003600-1A Saccharum spontaneum HOM05M000297 ORTHO05M000215 1.3e-51 206.1 139 95.7
GWHGAZTO020734 Oryza alta HOM05M002838 ORTHO05M003580 2.8e-51 204.9 117 88.0
PH02Gene01062 Phyllostachys edulis HOM05M002838 ORTHO05M003580 2.8e-51 204.9 175 82.9
PH02Gene04900 Phyllostachys edulis HOM05M002838 ORTHO05M003580 3.8e-48 194.5 116 85.3
TraesCS6B03G0956000 Triticum aestivum HOM05M002838 ORTHO05M003580 2.1e-46 188.7 180 78.3
TRIDC6BG054130 Triticum dicoccoides HOM05M002838 ORTHO05M003580 2.1e-46 188.7 180 78.3
Misin07G265200 Miscanthus sinensis HOM05M002838 ORTHO05M003580 7.9e-46 186.8 175 61.7
AET6Gv20764200 Aegilops tauschii HOM05M002838 ORTHO05M003580 2.3e-45 185.3 178 81.5
TraesCS6D03G0683300 Triticum aestivum HOM05M002838 ORTHO05M003580 2.3e-45 185.3 178 81.5
GWHGASIY033161 Secale cereale HOM05M002838 ORTHO05M003580 3.9e-45 184.5 181 65.2
Misin11G206800 Miscanthus sinensis HOM05M002838 ORTHO05M003580 6.7e-45 183.7 176 69.3
Horvu_MOREX_6H01G473600 Hordeum vulgare HOM05M002838 ORTHO05M003580 1.1e-44 183.0 108 83.3
TRITD6Av1G189800 Triticum turgidum HOM05M002838 ORTHO05M003580 4.4e-44 181.0 173 64.2
TraesCS6A03G0806300 Triticum aestivum HOM05M002838 ORTHO05M003580 4.8e-43 177.6 122 80.3
TRIDC6AG046450 Triticum dicoccoides HOM05M002838 ORTHO05M003580 4.8e-43 177.6 122 80.3
Misin16G026200 Miscanthus sinensis HOM05M002838 ORTHO05M003580 1.3e-40 169.5 175 57.7
Ot_Chr2_g15919 Oropetium thomaeum HOM05M002838 ORTHO05M003580 4.2e-39 164.5 119 70.6
Bradi1g45000 Brachypodium distachyon HOM05M002838 ORTHO05M003580 6.7e-37 157.1 121 71.1
Bradi3g59530 Brachypodium distachyon HOM05M002838 ORTHO05M003580 6.7e-37 157.1 111 75.7
GWHGAZTO086534 Oryza alta HOM05M002838 ORTHO05M003580 4.4e-36 154.5 123 69.1
TraesCS7D03G0429600 Triticum aestivum HOM05M002838 ORTHO05M003580 4.4e-36 154.5 121 67.8
GWHGASIY020841 Secale cereale HOM05M002838 ORTHO05M003580 9.7e-36 153.3 119 68.9
TraesCS7A03G0445300 Triticum aestivum HOM05M002838 ORTHO05M003580 1.3e-35 152.9 121 67.8
GWHGAZTO037694 Oryza alta HOM05M002838 ORTHO05M003580 1.7e-35 152.5 125 68.0
TraesCS7B03G0254100 Triticum aestivum HOM05M002838 ORTHO05M003580 3.7e-35 151.4 114 68.4
Dexi4B01G0009750 Digitaria exilis HOM05M002838 ORTHO05M003580 4.8e-35 151.0 120 70.0
Aco002900 Ananas comosus HOM05M002838 ORTHO05M003580 8.2e-35 150.2 112 67.9
TRIDC7AG023810 Triticum dicoccoides HOM05M002838 ORTHO05M003580 1.8e-34 149.1 121 66.9
GWHGAORA016703 Cenchrus purpureus HOM05M002838 ORTHO05M003580 9.1e-34 146.7 117 71.8
Pahal.4G267400 Panicum hallii HOM05M002838 ORTHO05M003580 9.1e-34 146.7 126 67.5
GWHGAORA056523 Cenchrus purpureus HOM05M002838 ORTHO05M003580 1.3e-32 142.9 123 67.5
Dexi4A01G0009380 Digitaria exilis HOM05M002838 ORTHO05M003580 1.3e-32 142.9 132 64.4
p5.00_sc00020_p0030 Elaeis guineensis HOM05M002838 ORTHO05M003580 1.7e-32 142.5 103 67.0
Sevir.4G101202 Setaria viridis HOM05M002838 ORTHO05M003580 1.7e-32 142.5 125 68.8
GWHGAORA016686 Cenchrus purpureus HOM05M002838 ORTHO05M003580 2.2e-32 142.1 114 71.9
Zm00001eb279820 Zea mays B73 HOM05M002838 ORTHO05M003580 3.2e-31 138.3 119 66.4
Zm00007a00017968 Zea mays B104 HOM05M002838 ORTHO05M003580 3.2e-31 138.3 119 66.4
Zjn_sc00049.1.g04730.1.am.mk Zoysia japonica ssp. nagirizaki HOM05M002838 ORTHO05M003580 3.6e-30 134.8 117 65.0
OsKitaake06g090900 Oryza sativa Kitaake HOM05M002838 ORTHO05M003580 8.0e-30 133.7 120 61.7
OsR498G0611947300.01 Oryza sativa ssp. indica HOM05M002838 ORTHO05M003580 8.0e-30 133.7 120 61.7
Misin18G104700 Miscanthus sinensis HOM05M002838 ORTHO05M003580 3.0e-29 131.7 133 60.9
p5.00_sc00005_p0132 Elaeis guineensis HOM05M002838 ORTHO05M003580 5.7e-28 127.5 118 57.6
Ma05_g26310 Musa acuminata HOM05M002838 ORTHO05M003580 2.8e-27 125.2 89 69.7
Misin19G102300 Miscanthus sinensis HOM05M002838 ORTHO05M003580 3.7e-27 124.8 134 58.2
Sobic.010G095500 Sorghum bicolor HOM05M002838 ORTHO05M003580 4.8e-27 124.4 127 59.8
PH02Gene46460 Phyllostachys edulis HOM05M002838 ORTHO05M003580 5.3e-26 120.9 74 82.4
V3.Lp_chr7_0.1G2378 Lolium perenne HOM05M002838 ORTHO05M003580 7.0e-26 120.6 99 61.6
CALSI_Maker00032147 Calamus simplicifolius HOM05M002838 ORTHO05M003580 7.7e-25 117.1 112 58.0
Ma07_g05620 Musa acuminata HOM05M002838 ORTHO05M003580 5.5e-23 110.9 103 59.2
Ma03_g12560 Musa acuminata HOM05M002838 ORTHO05M003580 1.6e-22 109.4 101 60.4
Sspon.08G0021920-1B Saccharum spontaneum HOM05M002838 ORTHO05M003580 2.1e-22 109.0 94 66.0
Ma04_g26690 Musa acuminata HOM05M002838 ORTHO05M003580 2.7e-22 108.6 99 59.6
TRITD6Bv1G180140 Triticum turgidum HOM05M002838 ORTHO05M003580 8.0e-22 107.1 70 81.4
OB06G17990 Oryza brachyantha HOM05M002838 ORTHO05M003580 2.3e-21 105.5 81 71.6
Spipo25G0015900 Spirodela polyrhiza HOM05M000347 ORTHO05M000436 2.3e-21 105.5 107 53.3
AET1Gv20681100 Aegilops tauschii HOM05M002838 ORTHO05M003580 3.0e-21 105.1 88 64.8
TRIDC7BG014320 Triticum dicoccoides HOM05M002838 ORTHO05M003580 1.2e-20 103.2 72 73.6
V3.Lp_chr6_0G15764 Lolium perenne HOM05M002838 ORTHO05M003580 1.5e-20 102.8 68 76.5
Sspon.08G0021920-2C Saccharum spontaneum HOM05M002838 ORTHO05M003580 1.5e-20 102.8 100 63.0
Solyc05g039960.1 Solanum lycopersicum HOM05M002838 ORTHO05M003580 2.0e-20 102.4 94 54.3
PH02Gene10044 Phyllostachys edulis HOM05M002838 ORTHO05M003580 3.4e-20 101.7 67 76.1
Solyc02g087030.1 Solanum lycopersicum HOM05M002838 ORTHO05M003580 3.4e-20 101.7 94 54.3
Ma06_g05170 Musa acuminata HOM05M002838 ORTHO05M003580 5.7e-20 100.9 87 58.6
CALSI_Maker00022801 Calamus simplicifolius HOM05M002838 ORTHO05M003580 7.5e-20 100.5 103 50.5
MBI14_g35398_MAGBIO Magnolia biondii HOM05M002838 ORTHO05M003580 1.3e-19 99.8 103 56.3
MBI15_g37783_MAGBIO Magnolia biondii HOM05M002838 ORTHO05M003580 1.3e-19 99.8 96 55.2
Solyc03g114130.1 Solanum lycopersicum HOM05M002838 ORTHO05M003580 2.2e-19 99.0 98 53.1
Spipo5G0024300 Spirodela polyrhiza HOM05M002838 ORTHO05M003580 2.2e-19 99.0 100 55.0
Ma07_g21510 Musa acuminata HOM05M002838 ORTHO05M003580 2.8e-19 98.6 78 64.1
DDU049G0230 Dioscorea dumetorum HOM05M002838 ORTHO05M003580 3.7e-19 98.2 95 54.7
ATR0580G431 Amborella trichopoda HOM05M002838 ORTHO05M003580 8.3e-19 97.1 97 57.7
CDE10G0680 Ceratophyllum demersum HOM05M002838 ORTHO05M003580 1.1e-18 96.7 93 61.3
Glyma.06G184300 Glycine max HOM05M002838 ORTHO05M003580 3.1e-18 95.1 90 56.7
CDE10G0322 Ceratophyllum demersum HOM05M000116 ORTHO05M000070 4.1e-18 94.7 93 60.2
p5.00_sc00044_p0104 Elaeis guineensis HOM05M002838 ORTHO05M003580 7.0e-18 94.0 96 52.1
Glyma.04G180800 Glycine max HOM05M002838 ORTHO05M003580 2.7e-17 92.0 90 55.6
AT5G14895 Arabidopsis thaliana HOM05M002838 ORTHO05M003580 6.5e-16 87.4 110 47.3
Potri.012G078300 Populus trichocarpa HOM05M002838 ORTHO05M003580 2.5e-15 85.5 95 48.4
Potri.003G101300 Populus trichocarpa HOM05M002838 ORTHO05M003580 9.5e-15 83.6 85 52.9
Potri.015G073800 Populus trichocarpa HOM05M002838 ORTHO05M003580 9.5e-15 83.6 95 47.4
Aco018953 Ananas comosus HOM05M002838 ORTHO05M003580 2.1e-14 82.4 101 48.5
Solyc06g071370.1 Solanum lycopersicum HOM05M002838 ORTHO05M003580 2.8e-14 82.0 92 46.7
AT3G01430 Arabidopsis thaliana HOM05M002838 ORTHO05M003580 3.6e-14 81.6 103 44.7
AT5G62865 Arabidopsis thaliana HOM05M002838 ORTHO05M003580 5.2e-13 77.8 81 49.4
Asa4G05915 Allium sativum HOM05M002838 ORTHO05M003580 6.8e-13 77.4 89 50.6
Glyma.17G091400 Glycine max HOM05M002838 ORTHO05M003580 1.5e-12 76.3 82 50.0
Glyma.05G036000 Glycine max HOM05M002838 ORTHO05M003580 2.6e-12 75.5 87 48.3
Zosma03g04290 Zostera marina HOM05M002838 ORTHO05M003580 3.4e-12 75.1 93 43.0
AT3G48020 Arabidopsis thaliana HOM05M002838 ORTHO05M003580 4.4e-12 74.7 88 50.0
Potri.001G132100 Populus trichocarpa HOM05M002838 ORTHO05M003580 2.8e-11 72.0 85 45.9
p5.00_sc00136_p0048 Elaeis guineensis HOM05M002838 ORTHO05M003580 1.8e-10 69.3 61 55.7
Potri.006G259300 Populus trichocarpa HOM05M002838 ORTHO05M003580 1.8e-10 69.3 88 42.0
Asa3G03901 Allium sativum HOM05M002838 ORTHO05M003580 4.1e-10 68.2 76 50.0
p5.00_sc00272_p0026 Elaeis guineensis HOM05M002838 ORTHO05M003580 5.4e-10 67.8 78 48.7
p5.00_sc00019_p0064 Elaeis guineensis HOM05M002838 ORTHO05M003580 7.0e-10 67.4 90 42.2
CDE01G0215 Ceratophyllum demersum HOM05M000953 ORTHO05M003414 3.5e-09 65.1 83 45.8
MBI15_g10642_MAGBIO Magnolia biondii HOM05M002838 ORTHO05M003580 3.5e-09 65.1 97 45.4
Solyc07g007130.1 Solanum lycopersicum HOM05M002838 ORTHO05M015299 1.3e-08 63.2 75 42.7
MBI14_g21251_MAGBIO Magnolia biondii HOM05M002838 ORTHO05M003580 2.9e-08 62.0 65 58.5
Glyma.15G202100 Glycine max HOM05M002838 ORTHO05M015299 3.3e-07 58.5 80 45.0
Glyma.13G157400 Glycine max HOM05M002838 ORTHO05M015299 4.3e-07 58.2 80 40.0
Seita.4G101600 Setaria italica HOM05M002838 ORTHO05M242958 5.6e-07 57.8 46 60.9
ATR0629G087 Amborella trichopoda HOM05M002838 ORTHO05M003580 9.5e-07 57.0 80 42.5
Glyma.09G095800 Glycine max HOM05M002838 ORTHO05M015299 2.1e-06 55.8 80 42.5


User provided reference genes

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