Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Misin08G266100 Miscanthus sinensis HOM05M002019 ORTHO05M002304 0.0e+00 2446.8 1336 100.0
Sspon.04G0004650-2B Saccharum spontaneum HOM05M002019 ORTHO05M002304 0.0e+00 2380.9 1339 97.1
Sspon.04G0004650-3D Saccharum spontaneum HOM05M002019 ORTHO05M002304 0.0e+00 2379.0 1339 97.5
MisinT359200 Miscanthus sinensis HOM05M002019 ORTHO05M002304 0.0e+00 2377.1 1339 97.6
Sobic.004G256500 Sorghum bicolor HOM05M002019 ORTHO05M002304 0.0e+00 2373.6 1339 97.4
Sspon.04G0004650-1A Saccharum spontaneum HOM05M002019 ORTHO05M002304 0.0e+00 2313.9 1339 95.7
Zm00001eb253140 Zea mays B73 HOM05M002019 ORTHO05M002304 0.0e+00 2239.2 1343 91.4
Zm00001eb189120 Zea mays B73 HOM05M002019 ORTHO05M002304 0.0e+00 2205.3 1339 91.7
Seita.1G300800 Setaria italica HOM05M002019 ORTHO05M002304 0.0e+00 2133.2 1342 87.6
Sevir.1G306900 Setaria viridis HOM05M002019 ORTHO05M002304 0.0e+00 2130.9 1342 87.6
Pahal.1G376300 Panicum hallii HOM05M002019 ORTHO05M002304 0.0e+00 2127.8 1338 86.8
Dexi1A01G0025760 Digitaria exilis HOM05M002019 ORTHO05M002304 0.0e+00 2067.4 1368 84.1
Dexi1B01G0024660 Digitaria exilis HOM05M002019 ORTHO05M002304 0.0e+00 2065.4 1368 83.8
GWHGAORA025086 Cenchrus purpureus HOM05M002019 ORTHO05M002304 0.0e+00 2031.1 1337 85.3
Zm00007a00007504 Zea mays B104 HOM05M002019 ORTHO05M002304 0.0e+00 1934.8 1198 91.0
Ot_Chr1_g19197 Oropetium thomaeum HOM05M002019 ORTHO05M002304 0.0e+00 1934.5 1340 78.5
EJB05_19816 Eragrostis curvula HOM05M002019 ORTHO05M002304 0.0e+00 1927.1 1328 81.4
PH02Gene08159 Phyllostachys edulis HOM05M002019 ORTHO05M002304 0.0e+00 1838.2 1354 77.2
OsR498G0204674600.01 Oryza sativa ssp. indica HOM05M002019 ORTHO05M002304 0.0e+00 1827.4 1350 75.0
Os02g0722800 Oryza sativa ssp. japonica HOM05M002019 ORTHO05M002304 0.0e+00 1791.5 1350 74.1
OsKitaake02g314900 Oryza sativa Kitaake HOM05M002019 ORTHO05M002304 0.0e+00 1790.4 1350 74.1
PH02Gene16427 Phyllostachys edulis HOM05M002019 ORTHO05M002304 0.0e+00 1783.8 1369 75.7
GWHGASIY033010 Secale cereale HOM05M002019 ORTHO05M002304 0.0e+00 1778.5 1381 74.9
GWHGAZTO072154 Oryza alta HOM05M002019 ORTHO05M002304 0.0e+00 1776.5 1347 73.7
TraesCS6B03G0902700 Triticum aestivum HOM05M002019 ORTHO05M002304 0.0e+00 1763.8 1370 74.7
Bradi3g56517 Brachypodium distachyon HOM05M002019 ORTHO05M002304 0.0e+00 1760.0 1386 74.0
TraesCS6A03G0759500 Triticum aestivum HOM05M002019 ORTHO05M002304 0.0e+00 1758.0 1276 77.5
V3.Lp_chr6_0G14788 Lolium perenne HOM05M002019 ORTHO05M002304 0.0e+00 1757.7 1276 77.3
TRIDC6BG051300 Triticum dicoccoides HOM05M002019 ORTHO05M002304 0.0e+00 1754.2 1354 75.1
GWHGAORA060525 Cenchrus purpureus HOM05M002019 ORTHO05M002304 0.0e+00 1748.0 1310 77.8
Horvu_MOREX_6H01G441500 Hordeum vulgare HOM05M002019 ORTHO05M002304 0.0e+00 1738.4 1359 74.1
TRITD6Bv1G168530 Triticum turgidum HOM05M002019 ORTHO05M002304 0.0e+00 1727.2 1282 76.2
AET6Gv20720600 Aegilops tauschii HOM05M002019 ORTHO05M002304 0.0e+00 1717.6 1377 72.9
OB02G37770 Oryza brachyantha HOM05M002019 ORTHO05M002304 0.0e+00 1709.5 1231 76.3
TraesCS6D03G0642100 Triticum aestivum HOM05M002019 ORTHO05M002304 0.0e+00 1648.3 1377 70.8
TRIDC7AG027980 Triticum dicoccoides HOM05M002019 ORTHO05M002304 0.0e+00 1566.6 1347 67.5
TRIDC7BG018800 Triticum dicoccoides HOM05M002019 ORTHO05M002304 0.0e+00 1565.8 1349 66.8
TraesCS7A03G0513500 Triticum aestivum HOM05M002019 ORTHO05M002304 0.0e+00 1562.7 1346 67.2
GWHGASIY020514 Secale cereale HOM05M002019 ORTHO05M002304 0.0e+00 1561.6 1349 67.8
Bradi1g43097 Brachypodium distachyon HOM05M002019 ORTHO05M002304 0.0e+00 1556.2 1348 67.7
AET7Gv20552000 Aegilops tauschii HOM05M002019 ORTHO05M002304 0.0e+00 1546.6 1333 66.6
TraesCS7B03G0330600 Triticum aestivum HOM05M002019 ORTHO05M002304 0.0e+00 1530.8 1347 65.5
TRITD7Bv1G053880 Triticum turgidum HOM05M002019 ORTHO05M002304 0.0e+00 1530.8 1347 65.5
TRITD7Av1G078890 Triticum turgidum HOM05M002019 ORTHO05M002304 0.0e+00 1525.4 1348 66.3
Horvu_MOREX_7H01G267500 Hordeum vulgare HOM05M002019 ORTHO05M002304 0.0e+00 1514.2 1347 65.9
TraesCS7D03G0494500 Triticum aestivum HOM05M002019 ORTHO05M002304 0.0e+00 1513.0 1349 65.5
OsR498G0612202900.01 Oryza sativa ssp. indica HOM05M002019 ORTHO05M002304 0.0e+00 1510.7 1381 65.7
OsKitaake06g126400 Oryza sativa Kitaake HOM05M002019 ORTHO05M002304 0.0e+00 1501.5 1380 65.3
Os06g0300800 Oryza sativa ssp. japonica HOM05M002019 ORTHO05M002304 0.0e+00 1501.5 1380 65.3
PH02Gene24870 Phyllostachys edulis HOM05M002019 ORTHO05M002304 0.0e+00 1486.1 1231 69.7
Zm00007a00049339 Zea mays B104 HOM05M002019 ORTHO05M002304 0.0e+00 1471.4 913 90.4
OB06G20630 Oryza brachyantha HOM05M002019 ORTHO05M002304 0.0e+00 1469.9 1244 67.8
GWHGAZTO038209 Oryza alta HOM05M002019 ORTHO05M002304 0.0e+00 1462.2 1236 69.2
TRITD6Av1G179880 Triticum turgidum HOM05M002019 ORTHO05M002304 0.0e+00 1449.1 1060 75.6
EJB05_45147 Eragrostis curvula HOM05M002019 ORTHO05M002304 0.0e+00 1444.9 1356 62.2
Zjn_sc00007.1.g06390.1.am.mkhc Zoysia japonica ssp. nagirizaki HOM05M002019 ORTHO05M002304 0.0e+00 1439.1 1338 61.6
V3.Lp_chr7_0.1G3068 Lolium perenne HOM05M002019 ORTHO05M002304 0.0e+00 1436.8 1341 63.7
GWHGAZTO086969 Oryza alta HOM05M002019 ORTHO05M002304 0.0e+00 1426.4 1292 65.0
Sevir.4G185600 Setaria viridis HOM05M002019 ORTHO05M002304 0.0e+00 1400.6 1362 62.3
Seita.4G131500 Setaria italica HOM05M002019 ORTHO05M002304 0.0e+00 1396.7 1356 62.4
Dexi4A01G0012110 Digitaria exilis HOM05M002019 ORTHO05M002304 0.0e+00 1395.9 1355 62.0
Dexi4B01G0012210 Digitaria exilis HOM05M002019 ORTHO05M002304 0.0e+00 1390.6 1355 61.9
GWHGAORA016487 Cenchrus purpureus HOM05M002019 ORTHO05M002304 0.0e+00 1369.8 1324 62.5
Zjn_sc00093.1.g01700.1.sm.mkhc Zoysia japonica ssp. nagirizaki HOM05M002019 ORTHO05M002304 0.0e+00 1362.1 1352 60.4
Pahal.4G222600 Panicum hallii HOM05M002019 ORTHO05M002304 0.0e+00 1355.5 1350 61.5
Ot_Chr2_gn32417 Oropetium thomaeum HOM05M002019 ORTHO05M002304 0.0e+00 1354.3 1357 59.8
Aco000858 Ananas comosus HOM05M002019 ORTHO05M002304 0.0e+00 1318.5 1396 58.7
Ma03_g10590 Musa acuminata HOM05M002019 ORTHO05M002304 0.0e+00 1316.2 1398 55.7
p5.00_sc00012_p0002 Elaeis guineensis HOM05M002019 ORTHO05M002304 0.0e+00 1287.3 1407 56.6
CALSI_Maker00039879 Calamus simplicifolius HOM05M002019 ORTHO05M002304 0.0e+00 1283.1 1295 56.2
Ma09_g18450 Musa acuminata HOM05M002019 ORTHO05M002304 0.0e+00 1274.2 1420 53.6
Ma05_g04010 Musa acuminata HOM05M002019 ORTHO05M002304 0.0e+00 1262.3 1415 56.6
GWHGAORA060558 Cenchrus purpureus HOM05M002019 ORTHO05M002304 0.0e+00 1260.7 963 73.1
CALSI_Maker00004577 Calamus simplicifolius HOM05M002019 ORTHO05M002304 0.0e+00 1256.1 1422 56.0
PH02Gene28025 Phyllostachys edulis HOM05M002019 ORTHO05M002304 0.0e+00 1231.1 1036 68.3
Ma03_g04030 Musa acuminata HOM05M002019 ORTHO05M002304 0.0e+00 1224.5 1418 51.8
evm.TU.AsparagusV1_01.484.V1.1 Asparagus officinalis HOM05M002019 ORTHO05M002304 0.0e+00 1216.1 1396 53.1
evm.TU.AsparagusV1_05.2169.V1.1 Asparagus officinalis HOM05M002019 ORTHO05M002304 0.0e+00 1213.0 1228 55.6
Aco015307 Ananas comosus HOM05M002019 ORTHO05M002304 0.0e+00 1173.3 1256 57.0
Asa3G03863 Allium sativum HOM05M002019 ORTHO05M002304 0.0e+00 1161.4 1375 49.2
DDU473G0214 Dioscorea dumetorum HOM05M002019 ORTHO05M002304 0.0e+00 1135.2 1415 50.8
HPP92_017870 Vanilla planifolia HOM05M002019 ORTHO05M002304 0.0e+00 1124.8 1293 54.5
MBI14_g30654_MAGBIO Magnolia biondii HOM05M002019 ORTHO05M002304 0.0e+00 1107.0 1364 51.8
CDE10G0783 Ceratophyllum demersum HOM05M002019 ORTHO05M002304 0.0e+00 1095.9 1395 48.3
MBI15_g00880_MAGBIO Magnolia biondii HOM05M002019 ORTHO05M002304 1.1e-307 1059.7 1395 50.3
Asa8G03038 Allium sativum HOM05M002019 ORTHO05M002304 4.4e-304 1047.7 1393 50.0
Zosma01g39580 Zostera marina HOM05M002019 ORTHO05M002304 1.8e-297 1025.8 1370 45.7
Potri.006G001400 Populus trichocarpa HOM05M002019 ORTHO05M002304 7.4e-296 1020.4 1435 46.8
Glyma.08G337200 Glycine max HOM05M002019 ORTHO05M002304 5.0e-292 1007.7 1284 49.4
Spipo12G0021000 Spirodela polyrhiza HOM05M002019 ORTHO05M002304 1.8e-289 999.2 1253 48.6
Potri.016G002100 Populus trichocarpa HOM05M002019 ORTHO05M002304 2.6e-288 995.3 1582 42.9
AT3G13300 Arabidopsis thaliana HOM05M002019 ORTHO05M002304 1.1e-286 989.9 1404 44.8
Potri.001G469500 Populus trichocarpa HOM05M002019 ORTHO05M002304 4.5e-285 984.6 1348 46.7
AT3G13290 Arabidopsis thaliana HOM05M002019 ORTHO05M002304 5.2e-281 971.1 1401 44.5
Glyma.15G122400 Glycine max HOM05M002019 ORTHO05M002304 1.3e-279 966.5 1438 46.0
Potri.011G166400 Populus trichocarpa HOM05M002019 ORTHO05M002304 3.7e-279 964.9 1261 47.2
HPP92_026159 Vanilla planifolia HOM05M002019 ORTHO05M002304 6.6e-276 954.1 1375 43.4
p5.00_sc00087_p0014 Elaeis guineensis HOM05M002019 ORTHO05M002304 4.4e-272 941.4 999 56.6
Glyma.09G016800 Glycine max HOM05M002019 ORTHO05M002304 3.5e-269 931.8 1436 46.6
Solyc10g005920.4 Solanum lycopersicum HOM05M002019 ORTHO05M002304 1.0e-268 930.2 1451 45.6
TRIDC6AG043700 Triticum dicoccoides HOM05M002019 ORTHO05M002304 7.0e-262 907.5 678 73.5
ATR0751G014 Amborella trichopoda HOM05M002019 ORTHO05M002304 1.1e-259 900.2 1445 43.7
Aco029404 Ananas comosus HOM05M002019 ORTHO05M002304 7.1e-254 880.9 1103 49.0
Zjn_sc00022.1.g02740.1.sm.mkhc Zoysia japonica ssp. nagirizaki HOM05M002019 ORTHO05M002304 1.2e-250 870.2 772 61.5
GWHGAZTO020514 Oryza alta HOM05M002019 ORTHO05M002304 9.6e-235 817.4 636 68.9
MBI15_g41024_MAGBIO Magnolia biondii HOM05M002019 ORTHO05M002304 1.2e-232 810.4 1120 45.1
SEGI_22382 Sequoiadendron giganteum HOM05M002019 ORTHO05M002304 6.4e-231 804.7 1417 41.2
Glyma.18G072400 Glycine max HOM05M002019 ORTHO05M002304 5.8e-224 781.6 1072 45.4
Zm00007a00048944 Zea mays B104 HOM05M002019 ORTHO05M002304 4.2e-222 775.4 433 93.5
Mapoly0037s0026 Marchantia polymorpha HOM05M002019 ORTHO05M002304 1.2e-221 773.9 1373 39.0
Bradi4g25645 Brachypodium distachyon HOM05M002019 ORTHO05M002304 1.0e-220 770.8 506 77.1
HPP92_015742 Vanilla planifolia HOM05M002019 ORTHO05M002304 6.9e-209 731.5 678 59.1
Pp3c15_3440 Physcomitrium patens HOM05M002019 ORTHO05M002304 1.0e-204 717.6 1360 37.4
Pp3c15_3450 Physcomitrium patens HOM05M002019 ORTHO05M002304 1.0e-204 717.6 1360 37.4
SEGI_32915 Sequoiadendron giganteum HOM05M002019 ORTHO05M002304 8.7e-204 714.5 1154 43.8
Pp3c9_4880 Physcomitrium patens HOM05M002019 ORTHO05M002304 3.1e-201 706.1 1366 36.8
AagrBONN_evm.TU.Sc2ySwM_228.5719 Anthoceros agrestis HOM05M000001 ORTHO05M002304 3.1e-193 679.5 1467 36.3
Solyc07g065950.4 Solanum lycopersicum HOM05M002019 ORTHO05M002304 9.4e-174 614.8 617 54.5
Pp3c7_25280 Physcomitrium patens HOM05M002019 ORTHO05M002304 1.8e-172 610.5 1380 34.9
Pp3c3_2660 Physcomitrium patens HOM05M002019 ORTHO05M002304 1.1e-169 601.3 1389 32.5
Glyma.08G337400 Glycine max HOM05M002019 ORTHO05M002304 1.9e-166 590.5 513 59.8
Pp3c11_5850 Physcomitrium patens HOM05M002019 ORTHO05M002304 1.8e-164 583.9 1352 32.7
CBR_g8647 Chara braunii HOM05M002019 ORTHO05M002304 4.1e-161 572.8 1523 31.5
CDE10G0998 Ceratophyllum demersum HOM05M002019 ORTHO05M002304 8.3e-138 495.4 696 47.3
GWHGAZTO020513 Oryza alta HOM05M002019 ORTHO05M002304 4.7e-133 479.6 361 70.6
MBI15_g35676_MAGBIO Magnolia biondii HOM05M002019 ORTHO05M002304 8.4e-130 468.8 843 40.1
Misin18G131900 Miscanthus sinensis HOM05M002019 ORTHO05M002304 1.0e-119 435.3 394 60.7
Zm00001eb253360 Zea mays B73 HOM05M002019 ORTHO05M002304 2.7e-112 410.6 219 95.0
CDE10G1208 Ceratophyllum demersum HOM05M002019 ORTHO05M002304 3.1e-108 397.1 444 52.7
Zm00007a00051170 Zea mays B104 HOM05M002019 ORTHO05M002304 2.9e-106 390.6 205 95.6
MBI15_g35675_MAGBIO Magnolia biondii HOM05M002019 ORTHO05M002304 2.0e-99 367.9 329 57.4
GWHGAORA060559 Cenchrus purpureus HOM05M002019 ORTHO05M002304 1.7e-98 364.8 323 65.6
Pp3c21_13620 Physcomitrium patens HOM05M002019 ORTHO05M002304 2.9e-98 364.0 490 44.5
Zm00007a00002446 Zea mays B104 HOM05M002019 ORTHO05M002304 9.0e-92 342.4 186 96.2
Sspon.04G0004650-1P Saccharum spontaneum HOM05M002019 ORTHO05M002304 1.7e-90 338.2 225 82.7
HPP92_015744 Vanilla planifolia HOM05M002019 ORTHO05M002304 2.3e-87 327.8 361 60.4
Zm00007a00014153 Zea mays B104 HOM05M002019 ORTHO05M002304 4.7e-72 276.9 217 75.1
HPP92_020474 Vanilla planifolia HOM05M002019 ORTHO05M002304 2.2e-66 258.1 173 63.0
Zm00001eb073000 Zea mays B73 HOM05M002019 ORTHO05M002304 8.8e-63 246.1 131 96.9
GWHGAORA020235 Cenchrus purpureus HOM05M002019 ORTHO05M002304 1.5e-62 245.4 226 61.5
Zm00007a00016981 Zea mays B104 HOM05M002019 ORTHO05M002304 2.9e-58 231.1 242 59.1
Pp3c21_13650 Physcomitrium patens HOM05M002019 ORTHO05M002304 3.4e-54 217.6 303 43.6
Zm00007a00038438 Zea mays B104 HOM05M002019 ORTHO05M002304 6.1e-48 196.8 234 53.0
Zm00007a00049098 Zea mays B104 HOM05M002019 ORTHO05M002304 3.4e-46 191.0 141 86.5
Zm00001eb023300 Zea mays B73 HOM05M002019 ORTHO05M002304 5.7e-46 190.3 140 87.1
SEGI_27419 Sequoiadendron giganteum HOM05M002019 ORTHO05M002304 3.7e-45 187.6 285 36.8
Zm00007a00005154 Zea mays B104 HOM05M002019 ORTHO05M002304 1.0e-42 179.5 256 46.9
Glyma.20G068950 Glycine max HOM05M002019 ORTHO05M002304 1.2e-40 172.6 132 58.3
Zm00007a00014259 Zea mays B104 HOM05M002912 ORTHO05M002386 1.0e-39 169.5 140 75.0
GWHGAORA020270 Cenchrus purpureus HOM05M002019 ORTHO05M002304 1.6e-35 155.6 158 57.6
MBI11_g40896_MAGBIO Magnolia biondii HOM05M002019 ORTHO05M002304 1.6e-35 155.6 199 42.7
Solyc03g071660.2 Solanum lycopersicum HOM05M002019 ORTHO05M002304 2.3e-34 151.8 163 47.9
Zm00001eb182140 Zea mays B73 HOM05M002019 ORTHO05M002304 1.5e-33 149.1 87 88.5
Asa2G04643 Allium sativum HOM05M002019 ORTHO05M002304 1.8e-31 142.1 100 70.0
PRCOL_00002031 Prasinoderma coloniale HOM05M002019 ORTHO05M002304 5.2e-31 140.6 504 29.2
GWHGAORA060526 Cenchrus purpureus HOM05M002019 ORTHO05M002304 6.8e-31 140.2 99 78.8
MCO03G091 Micromonas commoda HOM05M002019 ORTHO05M002304 5.4e-28 130.6 263 34.2
Zm00007a00015404 Zea mays B104 HOM05M002019 ORTHO05M002304 4.6e-27 127.5 109 77.1
Cre12.g553100 Chlamydomonas reinhardtii HOM05M002019 ORTHO05M002304 8.1e-24 116.7 463 26.1
Solyc07g021140.1 Solanum lycopersicum HOM05M002019 ORTHO05M002304 8.9e-23 113.2 131 46.6
SEGI_21202 Sequoiadendron giganteum HOM05M002019 ORTHO05M002304 2.6e-22 111.7 270 37.8
Zm00007a00003494 Zea mays B104 HOM05M002019 ORTHO05M014075 4.4e-22 110.9 116 72.4
SEGI_32205 Sequoiadendron giganteum HOM05M002019 ORTHO05M012514 1.1e-17 96.3 651 22.3
Zm00007a00014385 Zea mays B104 HOM05M002019 ORTHO05M014075 2.4e-15 88.6 135 62.2
Zm00007a00014387 Zea mays B104 HOM05M002019 ORTHO05M014075 2.4e-15 88.6 135 62.2
Solyc12g062490.1 Solanum lycopersicum HOM05M002019 ORTHO05M002304 5.2e-15 87.4 116 40.5
Zm00001eb306620 Zea mays B73 HOM05M002912 ORTHO05M002386 1.5e-14 85.9 47 89.4
Solyc02g005370.1 Solanum lycopersicum HOM05M002019 ORTHO05M002304 1.7e-10 72.4 129 34.1
GWHGAORA020271 Cenchrus purpureus HOM05M000769 ORTHO05M019359 3.9e-10 71.2 87 52.9
Asa2G04642 Allium sativum HOM05M002019 ORTHO05M000714 1.9e-09 68.9 67 47.8
TraesCS6B03G0903600 Triticum aestivum HOM05M005259 ORTHO05M002360 1.9e-09 68.9 75 57.3
Solyc11g039850.1 Solanum lycopersicum HOM05M002019 ORTHO05M002304 3.3e-09 68.2 107 38.3
Asa2G03649 Allium sativum HOM05M002133 ORTHO05M002304 3.6e-08 64.7 40 67.5
SEGI_19301 Sequoiadendron giganteum HOM05M003926 ORTHO05M004712 1.8e-07 62.4 69 49.3
SEGI_27182 Sequoiadendron giganteum HOM05M004823 ORTHO05M004712 6.9e-07 60.5 71 45.1
TraesCS6A03G0759900 Triticum aestivum HOM05M005259 ORTHO05M002360 6.9e-07 60.5 72 52.8
HPP92_020473 Vanilla planifolia HOM05M002019 ORTHO05M265803 7.6e-06 57.0 307 23.5
Dexi5A01G0003590 Digitaria exilis HOM05M001660 ORTHO05M001590 9.9e-06 56.6 167 28.7


User provided reference genes

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