Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Misin08G210100 Miscanthus sinensis HOM05M000075 ORTHO05M143551 9.8e-77 289.3 145 100.0
EJB05_35842 Eragrostis curvula HOM05M000075 ORTHO05M000081 4.7e-10 67.8 102 44.1
EJB05_35859 Eragrostis curvula HOM05M000075 ORTHO05M000081 1.1e-08 63.2 101 46.5
PH02Gene41329 Phyllostachys edulis HOM05M000075 ORTHO05M000081 1.5e-08 62.8 102 39.2
Sspon.03G0002880-3C Saccharum spontaneum HOM05M000075 ORTHO05M000081 2.6e-08 62.0 90 47.8
Ot_Chr5_g04891 Oropetium thomaeum HOM05M000075 ORTHO05M000081 7.4e-08 60.5 103 42.7
OB05G26760 Oryza brachyantha HOM05M000075 ORTHO05M000081 9.7e-08 60.1 105 40.0
GWHGAZTO035200 Oryza alta HOM05M000075 ORTHO05M000081 1.3e-07 59.7 102 38.2
GWHGAZTO035202 Oryza alta HOM05M000075 ORTHO05M000081 1.3e-07 59.7 102 38.2
GWHGAORA045410 Cenchrus purpureus HOM05M000075 ORTHO05M000081 1.7e-07 59.3 99 38.4
Pahal.3G252100 Panicum hallii HOM05M000075 ORTHO05M000081 2.2e-07 58.9 102 39.2
Sspon.03G0002880-1A Saccharum spontaneum HOM05M000075 ORTHO05M000081 2.8e-07 58.5 103 38.8
Sspon.07G0006400-4D Saccharum spontaneum HOM05M000075 ORTHO05M000081 2.8e-07 58.5 81 51.9
Zjn_sc00012.1.g06270.1.am.mk Zoysia japonica ssp. nagirizaki HOM05M000075 ORTHO05M000081 3.7e-07 58.2 105 41.0
GWHGAORA038178 Cenchrus purpureus HOM05M000075 ORTHO05M000081 4.8e-07 57.8 102 40.2
Sevir.3G222800 Setaria viridis HOM05M000075 ORTHO05M000081 4.8e-07 57.8 102 39.2
PH02Gene04996 Phyllostachys edulis HOM05M000075 ORTHO05M000081 6.3e-07 57.4 103 39.8
Sspon.03G0002880-2B Saccharum spontaneum HOM05M000075 ORTHO05M000081 8.2e-07 57.0 103 38.8
Sspon.03G0029550-1B Saccharum spontaneum HOM05M000075 ORTHO05M000081 8.2e-07 57.0 103 38.8
Seita.5G377800 Setaria italica HOM05M000075 ORTHO05M000081 1.1e-06 56.6 103 37.9
Sevir.5G383000 Setaria viridis HOM05M000075 ORTHO05M000081 1.1e-06 56.6 103 37.9
GWHGAORA003225 Cenchrus purpureus HOM05M000075 ORTHO05M000081 1.4e-06 56.2 102 39.2
GWHGAORA038155 Cenchrus purpureus HOM05M000075 ORTHO05M000081 1.4e-06 56.2 102 39.2
Misin16G163600 Miscanthus sinensis HOM05M000075 ORTHO05M000081 1.4e-06 56.2 108 40.7
V3.Lp_chr3_0G19980 Lolium perenne HOM05M000075 ORTHO05M000081 1.8e-06 55.8 99 39.4
PH02Gene45333 Phyllostachys edulis HOM05M000075 ORTHO05M000081 1.8e-06 55.8 103 38.8
Sobic.009G162800 Sorghum bicolor HOM05M000075 ORTHO05M000081 1.8e-06 55.8 104 40.4
GWHGAZTO005913 Oryza alta HOM05M000075 ORTHO05M000081 2.4e-06 55.5 99 41.4
V3.Lp_chr1_0G15056 Lolium perenne HOM05M000075 ORTHO05M000081 3.1e-06 55.1 103 37.9
Misin05G342000 Miscanthus sinensis HOM05M000075 ORTHO05M000081 3.1e-06 55.1 103 36.9
OsKitaake01g395800 Oryza sativa Kitaake HOM05M000075 ORTHO05M000081 3.1e-06 55.1 99 41.4
OsR498G0102313000.01 Oryza sativa ssp. indica HOM05M000075 ORTHO05M000081 3.1e-06 55.1 99 41.4
Os01g0842500 Oryza sativa ssp. japonica HOM05M000075 ORTHO05M000081 3.1e-06 55.1 99 41.4
Bradi2g54690 Brachypodium distachyon HOM05M000075 ORTHO05M000081 4.1e-06 54.7 100 38.0
Sobic.003G352800 Sorghum bicolor HOM05M000075 ORTHO05M000081 4.1e-06 54.7 103 37.9
Zm00007a00018447 Zea mays B104 HOM05M000075 ORTHO05M000081 4.1e-06 54.7 103 36.9
Dexi5A01G0032250 Digitaria exilis HOM05M000075 ORTHO05M000081 5.3e-06 54.3 99 37.4
Pahal.5G094200 Panicum hallii HOM05M000075 ORTHO05M000081 5.3e-06 54.3 103 38.8
AET3Gv20810400 Aegilops tauschii HOM05M000075 ORTHO05M000081 7.0e-06 53.9 101 40.6
TraesCS3D03G0784800 Triticum aestivum HOM05M000075 ORTHO05M000081 7.0e-06 53.9 101 40.6
OB01G45650 Oryza brachyantha HOM05M000075 ORTHO05M000081 9.1e-06 53.5 99 40.4
Sspon.03G0002920-3D Saccharum spontaneum HOM05M000075 ORTHO05M000081 9.1e-06 53.5 103 41.7


User provided reference genes

Program Settings