Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Misin08G200900 Miscanthus sinensis HOM05M008731 ORTHO05M011068 0.0e+00 1403.3 702 100.0
Sspon.04G0008390-3C Saccharum spontaneum HOM05M008731 ORTHO05M011068 0.0e+00 1262.3 702 91.0
Sobic.004G215200 Sorghum bicolor HOM05M008731 ORTHO05M011068 0.0e+00 1249.2 704 90.1
Sspon.04G0008390-1A Saccharum spontaneum HOM05M008731 ORTHO05M011068 0.0e+00 1169.1 706 86.3
Zm00007a00035865 Zea mays B104 HOM05M008731 ORTHO05M011068 0.0e+00 1087.4 715 78.9
Zm00001eb247170 Zea mays B73 HOM05M008731 ORTHO05M011068 0.0e+00 1080.9 715 78.3
Sspon.04G0024590-1B Saccharum spontaneum HOM05M008731 ORTHO05M011068 7.6e-300 1032.7 555 93.0
Seita.1G234900 Setaria italica HOM05M008731 ORTHO05M011068 1.6e-257 892.1 748 67.1
Sevir.1G239900 Setaria viridis HOM05M008731 ORTHO05M011068 1.6e-257 892.1 748 67.0
Pahal.1G308000 Panicum hallii HOM05M008731 ORTHO05M011068 1.8e-248 862.1 750 65.6
GWHGAORA024459 Cenchrus purpureus HOM05M008731 ORTHO05M011068 9.8e-247 856.3 753 64.8
Dexi1A01G0020510 Digitaria exilis HOM05M008731 ORTHO05M011068 1.1e-234 816.2 751 62.5
EJB05_20768 Eragrostis curvula HOM05M008731 ORTHO05M011068 2.3e-232 808.5 747 61.8
EJB05_20826 Eragrostis curvula HOM05M008731 ORTHO05M011068 6.8e-232 807.0 747 61.8
Dexi1B01G0019190 Digitaria exilis HOM05M008731 ORTHO05M011068 1.2e-225 786.2 765 60.7
GWHGAORA059857 Cenchrus purpureus HOM05M008731 ORTHO05M011068 4.0e-224 781.2 705 63.3
Ot_Chr1_g02767 Oropetium thomaeum HOM05M008731 ORTHO05M011068 9.3e-197 690.3 746 54.4
PH02Gene18692 Phyllostachys edulis HOM05M008731 ORTHO05M011068 9.3e-197 690.3 753 55.5
GWHGAORA059827 Cenchrus purpureus HOM05M001819 ORTHO05M001822 2.5e-194 682.2 683 58.9
GWHGASIY032161 Secale cereale HOM05M008731 ORTHO05M011068 7.0e-152 541.2 754 47.2
OsR498G0204323600.01 Oryza sativa ssp. indica HOM05M008731 ORTHO05M011068 1.0e-150 537.3 777 46.7
TraesCS6A03G0629100 Triticum aestivum HOM05M008731 ORTHO05M011068 1.0e-150 537.3 747 46.9
TraesCS6D03G0513200 Triticum aestivum HOM05M008731 ORTHO05M011068 1.7e-150 536.6 747 47.3
GWHGAZTO019513 Oryza alta HOM05M008731 ORTHO05M011068 1.7e-145 520.0 770 46.9
GWHGAZTO071183 Oryza alta HOM05M008731 ORTHO05M011068 9.4e-141 504.2 781 45.5
TRITD6Av1G147010 Triticum turgidum HOM05M008731 ORTHO05M011068 3.0e-139 499.2 710 46.9
OsKitaake02g248500 Oryza sativa Kitaake HOM05M008731 ORTHO05M011068 3.4e-130 469.2 692 45.5
TraesCS6B03G0743600 Triticum aestivum HOM05M008731 ORTHO05M011068 1.6e-116 423.7 551 49.7
TRITD6Bv1G132290 Triticum turgidum HOM05M008731 ORTHO05M011068 1.4e-115 420.6 551 49.5
OB02G31520 Oryza brachyantha HOM05M008731 ORTHO05M011068 3.1e-115 419.5 752 40.8
Bradi3g48815 Brachypodium distachyon HOM05M008731 ORTHO05M011068 2.3e-110 403.3 589 46.5
TRIDC6BG041220 Triticum dicoccoides HOM05M008731 ORTHO05M011068 4.3e-109 399.1 522 49.0
AET6Gv20591200 Aegilops tauschii HOM05M008731 ORTHO05M011068 4.5e-82 309.3 478 42.3
Os02g0617200 Oryza sativa ssp. japonica HOM05M008731 ORTHO05M011068 5.7e-21 106.3 149 48.3
Aco017837 Ananas comosus HOM05M008731 ORTHO05M011068 1.8e-14 84.7 285 28.4
Zjn_sc00007.1.g12290.1.sm.mkhc Zoysia japonica ssp. nagirizaki HOM05M008731 ORTHO05M011068 1.5e-08 65.1 38 84.2


User provided reference genes

Program Settings