Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Misin08G021500 Miscanthus sinensis HOM05M001951 ORTHO05M004924 2.3e-94 348.6 247 100.0
Sspon.04G0019430-1P Saccharum spontaneum HOM05M001951 ORTHO05M004924 3.4e-93 344.7 247 78.1
Misin07G024700 Miscanthus sinensis HOM05M001951 ORTHO05M004924 1.1e-91 339.7 249 97.2
PH02Gene10239 Phyllostachys edulis HOM05M001951 ORTHO05M004924 5.4e-91 337.4 246 78.5
Sspon.04G0019430-2D Saccharum spontaneum HOM05M001951 ORTHO05M004924 1.2e-90 336.3 246 76.4
Sobic.004G025300 Sorghum bicolor HOM05M001951 ORTHO05M004924 1.6e-90 335.9 249 81.5
GWHGAORA058161 Cenchrus purpureus HOM05M001951 ORTHO05M004924 2.7e-90 335.1 246 77.2
GWHGAORA015150 Cenchrus purpureus HOM05M001951 ORTHO05M004924 1.0e-89 333.2 246 78.0
Dexi1A01G0002560 Digitaria exilis HOM05M001951 ORTHO05M004924 1.0e-89 333.2 248 84.7
Pahal.1G022200 Panicum hallii HOM05M001951 ORTHO05M004924 2.3e-89 332.0 247 76.9
Dexi1B01G0002510 Digitaria exilis HOM05M001951 ORTHO05M004924 2.9e-89 331.6 248 84.3
GWHGAZTO016382 Oryza alta HOM05M001951 ORTHO05M004924 5.0e-89 330.9 249 78.3
Zm00001eb230940 Zea mays B73 HOM05M001951 ORTHO05M004924 6.6e-89 330.5 246 94.3
Zm00007a00000609 Zea mays B104 HOM05M001951 ORTHO05M004924 6.6e-89 330.5 246 94.3
Zm00007a00008533 Zea mays B104 HOM05M001951 ORTHO05M004924 6.6e-89 330.5 246 94.3
Sspon.04G0019440-2D Saccharum spontaneum HOM05M001951 ORTHO05M004924 8.6e-89 330.1 255 74.1
GWHGAZTO068127 Oryza alta HOM05M001951 ORTHO05M004924 1.9e-88 328.9 250 79.6
PH02Gene14611 Phyllostachys edulis HOM05M001951 ORTHO05M004924 2.5e-88 328.6 247 76.9
Sevir.1G101100 Setaria viridis HOM05M001951 ORTHO05M004924 3.3e-88 328.2 246 76.8
Seita.1G101800 Setaria italica HOM05M001951 ORTHO05M004924 4.3e-88 327.8 246 76.4
OsKitaake02g022100 Oryza sativa Kitaake HOM05M001951 ORTHO05M004924 7.3e-88 327.0 245 77.6
OsR498G0202883300.01 Oryza sativa ssp. indica HOM05M001951 ORTHO05M004924 7.3e-88 327.0 245 77.6
Os02g0126800 Oryza sativa ssp. japonica HOM05M001951 ORTHO05M004924 7.3e-88 327.0 245 77.6
GWHGASIY030752 Secale cereale HOM05M001951 ORTHO05M004924 2.8e-87 325.1 244 75.4
TraesCS6A03G0202500 Triticum aestivum HOM05M001951 ORTHO05M004924 3.6e-87 324.7 245 78.0
TRITD6Av1G023580 Triticum turgidum HOM05M001951 ORTHO05M004924 3.6e-87 324.7 245 78.0
TRIDC6AG011510 Triticum dicoccoides HOM05M001951 ORTHO05M004924 4.7e-87 324.3 245 77.6
V3.Lp_chr6_0G9498 Lolium perenne HOM05M001951 ORTHO05M004924 6.1e-87 323.9 249 75.9
OB02G12050 Oryza brachyantha HOM05M001951 ORTHO05M004924 1.0e-86 323.2 249 77.5
TraesCS6B03G0270500 Triticum aestivum HOM05M001951 ORTHO05M004924 2.3e-86 322.0 247 76.9
TRITD6Bv1G032470 Triticum turgidum HOM05M001951 ORTHO05M004924 2.3e-86 322.0 247 76.9
Bradi3g02630 Brachypodium distachyon HOM05M001951 ORTHO05M004924 3.1e-86 321.6 248 77.8
Horvu_MOREX_6H01G097100 Hordeum vulgare HOM05M001951 ORTHO05M004924 3.1e-86 321.6 245 77.6
GWHGAORA015124 Cenchrus purpureus HOM05M001951 ORTHO05M004924 5.2e-86 320.9 246 77.6
Ot_Chr1_g14235 Oropetium thomaeum HOM05M001951 ORTHO05M004924 5.2e-86 320.9 247 85.0
Zjn_sc00045.1.g04880.1.sm.mkhc Zoysia japonica ssp. nagirizaki HOM05M001951 ORTHO05M004924 5.0e-81 304.3 235 79.1
EJB05_25388 Eragrostis curvula HOM05M001951 ORTHO05M004924 5.6e-80 300.8 269 84.8
DDU002G0253 Dioscorea dumetorum HOM05M001951 ORTHO05M004924 4.9e-76 287.7 238 66.0
p5.00_sc00337_p0016 Elaeis guineensis HOM05M001951 ORTHO05M004924 8.3e-76 287.0 237 65.4
DDU751G0009 Dioscorea dumetorum HOM05M001951 ORTHO05M004924 1.1e-75 286.6 238 65.5
Aco017535 Ananas comosus HOM05M001951 ORTHO05M004924 1.2e-74 283.1 235 66.8
CALSI_Maker00013944 Calamus simplicifolius HOM05M001951 ORTHO05M004924 1.0e-73 280.0 239 64.0
Solyc01g091020.3 Solanum lycopersicum HOM05M001951 ORTHO05M004924 1.1e-72 276.6 233 62.7
Zosma06g02990 Zostera marina HOM05M001951 ORTHO05M004924 1.5e-72 276.2 242 63.2
TRIDC6BG015640 Triticum dicoccoides HOM05M001951 ORTHO05M004924 7.3e-72 273.9 147 95.9
evm.TU.AsparagusV1_08.248.V1.1 Asparagus officinalis HOM05M001951 ORTHO05M004924 1.2e-71 273.1 239 62.3
Ma00_g03920 Musa acuminata HOM05M001951 ORTHO05M004924 2.1e-71 272.3 239 61.9
AT2G45200 Arabidopsis thaliana HOM05M001951 ORTHO05M004924 8.1e-71 270.4 237 60.8
Potri.002G145200 Populus trichocarpa HOM05M001951 ORTHO05M004924 5.2e-70 267.7 236 61.9
HPP92_028204 Vanilla planifolia HOM05M001951 ORTHO05M004924 5.2e-70 267.7 238 61.3
Potri.014G066800 Populus trichocarpa HOM05M001951 ORTHO05M004924 5.8e-69 264.2 239 60.3
ATR0568G117 Amborella trichopoda HOM05M001951 ORTHO05M004924 4.9e-68 261.2 235 59.1
CDE11G0946 Ceratophyllum demersum HOM05M001951 ORTHO05M004924 6.4e-68 260.8 233 60.5
Glyma.01G137300 Glycine max HOM05M001951 ORTHO05M004924 1.9e-67 259.2 239 59.4
Glyma.03G029700 Glycine max HOM05M001951 ORTHO05M004924 3.2e-67 258.5 237 59.5
Spipo17G0021200 Spirodela polyrhiza HOM05M001951 ORTHO05M004924 4.1e-67 258.1 252 57.1
Sspon.04G0019430-1A Saccharum spontaneum HOM05M001951 ORTHO05M004924 1.0e-65 253.4 230 66.1
Asa6G03061 Allium sativum HOM05M001951 ORTHO05M004924 1.1e-62 243.4 222 59.9
CALSI_Maker00024051 Calamus simplicifolius HOM05M001951 ORTHO05M004924 5.2e-62 241.1 247 57.5
evm.TU.AsparagusV1_01.1648.V1.1 Asparagus officinalis HOM05M001951 ORTHO05M004924 7.6e-61 237.3 147 80.3
AagrBONN_evm.TU.Sc2ySwM_228.4803 Anthoceros agrestis HOM05M001951 ORTHO05M004924 8.4e-60 233.8 233 54.5
evm.TU.AsparagusV1_06.1452.V1.1 Asparagus officinalis HOM05M001951 ORTHO05M004924 8.4e-60 233.8 147 79.6
Aco029845 Ananas comosus HOM05M001951 ORTHO05M004924 1.1e-59 233.4 245 53.1
SMO146G0366 Selaginella moellendorffii HOM05M001951 ORTHO05M004924 1.9e-59 232.6 233 54.9
HPP92_008916 Vanilla planifolia HOM05M001951 ORTHO05M004924 4.2e-59 231.5 147 78.9
Mapoly0016s0161 Marchantia polymorpha HOM05M001951 ORTHO05M004924 6.0e-58 227.6 235 53.2
GWHGASIY030710 Secale cereale HOM05M001951 ORTHO05M004924 1.2e-55 219.9 119 95.0
Ma09_g19180 Musa acuminata HOM05M001951 ORTHO05M004924 2.4e-54 215.7 245 51.0
Spipo17G0014400 Spirodela polyrhiza HOM05M001951 ORTHO05M004924 1.5e-53 213.0 244 49.2
CDE09G0219 Ceratophyllum demersum HOM05M001951 ORTHO05M004924 2.6e-53 212.2 201 57.7
ATR0090G047 Amborella trichopoda HOM05M001951 ORTHO05M004924 1.4e-51 206.5 232 49.6
CBR_g20431 Chara braunii HOM05M001951 ORTHO05M004924 1.7e-49 199.5 233 48.9
p5.00_sc00013_p0058 Elaeis guineensis HOM05M001951 ORTHO05M004924 3.3e-48 195.3 117 84.6
DDU053G0004 Dioscorea dumetorum HOM05M001951 ORTHO05M004924 4.6e-42 174.9 263 42.6
DDU102G0264 Dioscorea dumetorum HOM05M001951 ORTHO05M004924 4.6e-42 174.9 263 42.6
Pp3c12_18190 Physcomitrium patens HOM05M001951 ORTHO05M004924 1.1e-40 170.2 231 45.9
MBI04_g25317_MAGBIO Magnolia biondii HOM05M001951 ORTHO05M004924 3.2e-35 152.1 273 37.4
AagrBONN_evm.TU.Sc2ySwM_368.539 Anthoceros agrestis HOM05M001951 ORTHO05M005753 3.5e-34 148.7 231 39.8
Pp3c16_5350 Physcomitrium patens HOM05M001951 ORTHO05M005753 6.9e-30 134.4 245 34.3
Pp3c4_11440 Physcomitrium patens HOM05M001951 ORTHO05M004924 9.0e-30 134.0 198 42.9
MCO15G138 Micromonas commoda HOM05M001951 ORTHO05M004924 1.7e-28 129.8 237 34.2
CALSI_Maker00023614 Calamus simplicifolius HOM05M001951 ORTHO05M004924 4.9e-28 128.3 169 45.6
Spipo10G0015600 Spirodela polyrhiza HOM05M001951 ORTHO05M005753 6.5e-28 127.9 241 34.4
Cre06.g280900 Chlamydomonas reinhardtii HOM05M001951 ORTHO05M004924 8.4e-28 127.5 241 35.3
Potri.003G180800 Populus trichocarpa HOM05M001951 ORTHO05M005753 2.5e-27 125.9 232 36.6
DDU536G0012 Dioscorea dumetorum HOM05M001951 ORTHO05M005753 4.2e-27 125.2 240 34.6
DDU775G0243 Dioscorea dumetorum HOM05M001951 ORTHO05M005753 4.2e-27 125.2 240 34.6
Zosma03g03850 Zostera marina HOM05M001951 ORTHO05M005753 5.5e-27 124.8 241 34.0
Glyma.08G217200 Glycine max HOM05M001951 ORTHO05M005753 9.3e-27 124.0 231 35.5
p5.00_sc00019_p0082 Elaeis guineensis HOM05M001951 ORTHO05M005753 1.6e-26 123.2 239 34.7
PRCOL_00004017 Prasinoderma coloniale HOM05M001951 ORTHO05M004924 1.6e-26 123.2 231 34.2
Asa5G04888 Allium sativum HOM05M001951 ORTHO05M005753 2.1e-26 122.9 240 33.8
Aco019678 Ananas comosus HOM05M001951 ORTHO05M005753 3.5e-26 122.1 239 33.9
Potri.001G047100 Populus trichocarpa HOM05M001951 ORTHO05M005753 4.6e-26 121.7 232 34.9
Ma07_g16400 Musa acuminata HOM05M001951 ORTHO05M005753 6.1e-26 121.3 235 34.5
evm.TU.AsparagusV1_05.3358.V1.1 Asparagus officinalis HOM05M001951 ORTHO05M005753 1.0e-25 120.6 240 34.6
Glyma.07G025200 Glycine max HOM05M001951 ORTHO05M005753 1.3e-25 120.2 232 34.1
AT1G15880 Arabidopsis thaliana HOM05M001951 ORTHO05M005753 3.9e-25 118.6 231 33.3
CDE02G4158 Ceratophyllum demersum HOM05M001951 ORTHO05M005753 3.9e-25 118.6 235 34.5
p5.00_sc00044_p0069 Elaeis guineensis HOM05M001951 ORTHO05M005753 5.1e-25 118.2 234 33.3
ATR0184G001 Amborella trichopoda HOM05M001951 ORTHO05M005753 1.9e-24 116.3 147 43.5
SEGI_19720 Sequoiadendron giganteum HOM05M001951 ORTHO05M004924 1.9e-24 116.3 77 72.7
CALSI_Maker00042665 Calamus simplicifolius HOM05M001951 ORTHO05M005753 2.5e-24 115.9 153 44.4
Ot_Chr9_gn39338 Oropetium thomaeum HOM05M001951 ORTHO05M005753 3.3e-24 115.5 234 32.5
OsKitaake08g166300 Oryza sativa Kitaake HOM05M001951 ORTHO05M005753 4.3e-24 115.2 233 32.2
OsR498G0816170600.01 Oryza sativa ssp. indica HOM05M001951 ORTHO05M005753 4.3e-24 115.2 233 32.2
Os08g0440000 Oryza sativa ssp. japonica HOM05M001951 ORTHO05M005753 4.3e-24 115.2 233 32.2
PH02Gene20540 Phyllostachys edulis HOM05M001951 ORTHO05M005753 4.3e-24 115.2 239 32.2
GWHGAZTO095282 Oryza alta HOM05M001951 ORTHO05M005753 5.7e-24 114.8 239 33.1
Ot_Chr2_g06079 Oropetium thomaeum HOM05M001951 ORTHO05M005753 7.4e-24 114.4 238 31.9
OsKitaake09g099800 Oryza sativa Kitaake HOM05M001951 ORTHO05M005753 7.4e-24 114.4 233 31.8
OsR498G0917456800.01 Oryza sativa ssp. indica HOM05M001951 ORTHO05M005753 7.4e-24 114.4 233 31.8
Os09g0416700 Oryza sativa ssp. japonica HOM05M001951 ORTHO05M005753 7.4e-24 114.4 233 31.8
PH02Gene28790 Phyllostachys edulis HOM05M001951 ORTHO05M005753 7.4e-24 114.4 239 33.5
Bradi4g30320 Brachypodium distachyon HOM05M001951 ORTHO05M005753 9.7e-24 114.0 239 32.6
CALSI_Maker00002938 Calamus simplicifolius HOM05M001951 ORTHO05M005753 9.7e-24 114.0 151 42.4
GWHGAORA008134 Cenchrus purpureus HOM05M001951 ORTHO05M005753 9.7e-24 114.0 239 32.2
SMO334G0065 Selaginella moellendorffii HOM05M001951 ORTHO05M005753 9.7e-24 114.0 148 45.9
TRITD5Bv1G133800 Triticum turgidum HOM05M001951 ORTHO05M005753 9.7e-24 114.0 233 31.8
GWHGAZTO051361 Oryza alta HOM05M001951 ORTHO05M005753 1.3e-23 113.6 233 31.8
Pahal.2G265600 Panicum hallii HOM05M001951 ORTHO05M005753 1.3e-23 113.6 239 32.2
TraesCS5B03G0591000 Triticum aestivum HOM05M001951 ORTHO05M005753 1.3e-23 113.6 233 31.8
TRIDC5BG038020 Triticum dicoccoides HOM05M001951 ORTHO05M005753 1.3e-23 113.6 233 31.8
EJB05_43017 Eragrostis curvula HOM05M001951 ORTHO05M005753 1.6e-23 113.2 239 32.6
Seita.2G205500 Setaria italica HOM05M001951 ORTHO05M005753 1.6e-23 113.2 239 32.2
Sevir.2G214000 Setaria viridis HOM05M001951 ORTHO05M005753 1.6e-23 113.2 239 32.2
GWHGASIY028619 Secale cereale HOM05M001951 ORTHO05M005753 2.2e-23 112.8 233 31.8
TraesCS5A03G0578100 Triticum aestivum HOM05M001951 ORTHO05M005753 2.2e-23 112.8 233 31.8
TRIDC5AG036140 Triticum dicoccoides HOM05M001951 ORTHO05M005753 2.2e-23 112.8 233 31.8
TRITD5Av1G143950 Triticum turgidum HOM05M001951 ORTHO05M005753 2.2e-23 112.8 233 31.8
evm.TU.AsparagusV1_01.88.V1.1 Asparagus officinalis HOM05M001951 ORTHO05M005753 2.8e-23 112.5 232 31.5
GWHGAORA047635 Cenchrus purpureus HOM05M001951 ORTHO05M005753 3.7e-23 112.1 239 32.2
Horvu_MOREX_5H01G376700 Hordeum vulgare HOM05M001951 ORTHO05M005753 3.7e-23 112.1 233 31.8
GWHGAZTO097794 Oryza alta HOM05M001951 ORTHO05M005753 4.8e-23 111.7 233 31.3
Misin04G189900 Miscanthus sinensis HOM05M001951 ORTHO05M005753 6.3e-23 111.3 239 31.8
OB08G23560 Oryza brachyantha HOM05M001951 ORTHO05M005753 6.3e-23 111.3 233 31.8
Sspon.05G0012250-2B Saccharum spontaneum HOM05M001951 ORTHO05M005753 6.3e-23 111.3 239 31.8
Sobic.002G202300 Sorghum bicolor HOM05M001951 ORTHO05M005753 6.3e-23 111.3 239 31.8
Zm00007a00042453 Zea mays B104 HOM05M001951 ORTHO05M005753 6.3e-23 111.3 239 32.2
V3.Lp_chr5_0G12904 Lolium perenne HOM05M001951 ORTHO05M005753 8.2e-23 110.9 233 32.2
Pp3c14_7230 Physcomitrium patens HOM05M001951 ORTHO05M005753 8.2e-23 110.9 234 32.1
Sspon.05G0012250-1A Saccharum spontaneum HOM05M001951 ORTHO05M005753 1.4e-22 110.2 239 31.4
Sspon.05G0012250-1T Saccharum spontaneum HOM05M001951 ORTHO05M005753 1.4e-22 110.2 239 31.4
Solyc06g065740.4 Solanum lycopersicum HOM05M001951 ORTHO05M005753 1.4e-22 110.2 247 31.2
Zm00001eb099480 Zea mays B73 HOM05M001951 ORTHO05M005753 1.4e-22 110.2 239 31.8
Zm00007a00045427 Zea mays B104 HOM05M001951 ORTHO05M005753 1.4e-22 110.2 239 31.8
PH02Gene06787 Phyllostachys edulis HOM05M001951 ORTHO05M005753 3.1e-22 109.0 239 31.8
PH02Gene06126 Phyllostachys edulis HOM05M001951 ORTHO05M005753 5.3e-22 108.2 238 31.1
AET5Gv20546500 Aegilops tauschii HOM05M001951 ORTHO05M005753 6.9e-22 107.8 147 40.8
Ma10_g24010 Musa acuminata HOM05M001951 ORTHO05M005753 1.2e-21 107.1 148 41.2
Zm00001eb312810 Zea mays B73 HOM05M001951 ORTHO05M005753 1.5e-21 106.7 153 41.8
GWHGAZTO048689 Oryza alta HOM05M001951 ORTHO05M005753 1.0e-20 104.0 263 30.8
EJB05_48890 Eragrostis curvula HOM05M001951 ORTHO05M005753 3.8e-20 102.1 267 29.2
Dexi2A01G0017560 Digitaria exilis HOM05M001951 ORTHO05M005753 5.0e-20 101.7 144 41.7
Dexi2B01G0016550 Digitaria exilis HOM05M001951 ORTHO05M005753 5.0e-20 101.7 144 41.7
GWHGAORA040114 Cenchrus purpureus HOM05M001951 ORTHO05M004924 6.5e-20 101.3 120 55.0
Mapoly0001s0245 Marchantia polymorpha HOM05M001951 ORTHO05M005753 1.2e-18 97.1 218 32.6
Pahal.6G215900 Panicum hallii HOM05M001951 ORTHO05M005753 1.2e-18 97.1 144 40.3
Sspon.05G0012250-3C Saccharum spontaneum HOM05M001951 ORTHO05M005753 2.1e-18 96.3 239 29.7
Dexi6A01G0014700 Digitaria exilis HOM05M001951 ORTHO05M005753 2.7e-18 95.9 142 40.1
Zjn_sc00018.1.g07230.1.sm.mkhc Zoysia japonica ssp. nagirizaki HOM05M001951 ORTHO05M005753 3.6e-18 95.5 239 29.7
Dexi6B01G0012990 Digitaria exilis HOM05M001951 ORTHO05M005753 1.5e-13 80.1 172 33.7
evm.TU.AsparagusV1_Unassigned.765.V1.1 Asparagus officinalis HOM05M002029 ORTHO05M004924 3.4e-13 79.0 76 56.6
Ma01_g10060 Musa acuminata HOM05M001951 ORTHO05M004924 7.7e-13 77.8 80 52.5
Asa0G05357 Allium sativum HOM05M001951 ORTHO05M044199 1.7e-12 76.6 140 35.0
Zm00007a00029138 Zea mays B104 HOM05M001951 ORTHO05M027166 3.8e-12 75.5 168 36.9
CALSI_Maker00019081 Calamus simplicifolius HOM05M001951 ORTHO05M004924 1.4e-11 73.6 107 42.1
Glyma.07G025100 Glycine max HOM05M001951 ORTHO05M005753 2.5e-11 72.8 76 48.7
Sspon.03G0044430-1C Saccharum spontaneum HOM05M001951 ORTHO05M004924 3.2e-11 72.4 43 83.7
Pp3c10_9140 Physcomitrium patens HOM05M001951 ORTHO05M005753 3.0e-09 65.9 143 32.2
HPP92_008915 Vanilla planifolia HOM05M001951 ORTHO05M004924 8.8e-09 64.3 40 75.0
AET6Gv20214700 Aegilops tauschii HOM05M001951 ORTHO05M004924 1.5e-08 63.5 38 84.2
evm.TU.AsparagusV1_07.2364.V1.1 Asparagus officinalis HOM05M008354 ORTHO05M010795 1.5e-08 63.5 38 78.9
PH02Gene45854 Phyllostachys edulis HOM05M001951 ORTHO05M004924 4.4e-08 62.0 34 88.2
Sspon.05G0012250-4D Saccharum spontaneum HOM05M001951 ORTHO05M005753 1.1e-06 57.4 200 25.0


User provided reference genes

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