Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Mapoly0052s0008 Marchantia polymorpha HOM05M006597 ORTHO05M008360 3.2e-29 130.2 61 100.0
Pp3c9_5250 Physcomitrium patens HOM05M006597 ORTHO05M008360 3.8e-14 80.1 59 64.4
Pp3c15_3960 Physcomitrium patens HOM05M006597 ORTHO05M008360 8.5e-14 79.0 57 61.4
AagrBONN_evm.TU.Sc2ySwM_369.408 Anthoceros agrestis HOM05M006597 ORTHO05M008360 7.2e-13 75.9 58 62.1
Aco003402 Ananas comosus HOM05M006597 ORTHO05M008360 1.1e-10 68.6 54 53.7
Glyma.17G002300 Glycine max HOM05M006597 ORTHO05M008360 2.6e-10 67.4 54 55.6
Ma06_g30590 Musa acuminata HOM05M006597 ORTHO05M008360 3.3e-10 67.0 39 74.4
Ma03_g18170 Musa acuminata HOM05M006597 ORTHO05M008360 4.4e-10 66.6 39 74.4
Ma08_g29600 Musa acuminata HOM05M006597 ORTHO05M008360 5.7e-10 66.2 54 53.7
Ot_Chr1_gn32017 Oropetium thomaeum HOM05M006597 ORTHO05M008360 5.7e-10 66.2 60 53.3
Sobic.004G183200 Sorghum bicolor HOM05M006597 ORTHO05M008360 5.7e-10 66.2 57 52.6
Dexi1A01G0017530 Digitaria exilis HOM05M006597 ORTHO05M008360 1.3e-09 65.1 60 53.3
Dexi1B01G0016390 Digitaria exilis HOM05M006597 ORTHO05M008360 2.2e-09 64.3 57 52.6
TRIDC6BG016310 Triticum dicoccoides HOM05M006597 ORTHO05M008360 2.2e-09 64.3 44 65.9
Misin07G367600 Miscanthus sinensis HOM05M006597 ORTHO05M008360 2.8e-09 63.9 57 50.9
Misin08G170000 Miscanthus sinensis HOM05M006597 ORTHO05M008360 2.8e-09 63.9 57 50.9
GWHGAZTO019086 Oryza alta HOM05M006597 ORTHO05M008360 2.8e-09 63.9 58 50.0
Potri.004G229900 Populus trichocarpa HOM05M006597 ORTHO05M008360 2.8e-09 63.9 55 52.7
Seita.1G199300 Setaria italica HOM05M006597 ORTHO05M008360 2.8e-09 63.9 57 50.9
Sevir.1G199400 Setaria viridis HOM05M006597 ORTHO05M008360 2.8e-09 63.9 57 50.9
TraesCS6B03G0603300 Triticum aestivum HOM05M006597 ORTHO05M008360 2.8e-09 63.9 57 49.1
TRITD6Bv1G097600 Triticum turgidum HOM05M006597 ORTHO05M008360 2.8e-09 63.9 57 49.1
OsKitaake02g211900 Oryza sativa Kitaake HOM05M006597 ORTHO05M008360 3.7e-09 63.5 57 50.9
Os02g0564200 Oryza sativa ssp. japonica HOM05M006597 ORTHO05M008360 3.7e-09 63.5 57 50.9
Spipo16G0054400 Spirodela polyrhiza HOM05M006597 ORTHO05M008360 3.7e-09 63.5 39 71.8
Zjn_sc00020.1.g00650.1.sm.mk Zoysia japonica ssp. nagirizaki HOM05M006597 ORTHO05M008360 3.7e-09 63.5 59 52.5
AET6Gv20223700 Aegilops tauschii HOM05M006597 ORTHO05M008360 4.8e-09 63.2 44 63.6
MBI03_g21081_MAGBIO Magnolia biondii HOM05M006597 ORTHO05M008360 4.8e-09 63.2 39 71.8
TraesCS6B03G0283900 Triticum aestivum HOM05M006597 ORTHO05M008360 4.8e-09 63.2 44 63.6
TRITD6Bv1G034900 Triticum turgidum HOM05M006597 ORTHO05M008360 4.8e-09 63.2 44 63.6
Zm00001eb244200 Zea mays B73 HOM05M006597 ORTHO05M008360 4.8e-09 63.2 57 50.9
Zm00007a00039639 Zea mays B104 HOM05M006597 ORTHO05M008360 4.8e-09 63.2 57 50.9
Horvu_MOREX_6H01G103800 Hordeum vulgare HOM05M006597 ORTHO05M008360 6.3e-09 62.8 45 66.7
Horvu_MOREX_6H01G275600 Hordeum vulgare HOM05M006597 ORTHO05M008360 6.3e-09 62.8 44 63.6
AET6Gv20495600 Aegilops tauschii HOM05M006597 ORTHO05M008360 1.4e-08 61.6 44 61.4
Bradi3g46130 Brachypodium distachyon HOM05M006597 ORTHO05M008360 1.4e-08 61.6 44 61.4
GWHGASIY031929 Secale cereale HOM05M006597 ORTHO05M008360 1.4e-08 61.6 44 61.4
GWHGASIY031938 Secale cereale HOM05M006597 ORTHO05M008360 1.4e-08 61.6 44 61.4
TraesCS6A03G0528700 Triticum aestivum HOM05M006597 ORTHO05M008360 1.4e-08 61.6 44 61.4
TraesCS6D03G0426800 Triticum aestivum HOM05M006597 ORTHO05M008360 1.4e-08 61.6 44 61.4
TRITD6Av1G112490 Triticum turgidum HOM05M006597 ORTHO05M008360 1.4e-08 61.6 44 61.4
V3.Lp_chr6_0G9744 Lolium perenne HOM05M006597 ORTHO05M008360 1.8e-08 61.2 44 61.4
Pahal.1G272400 Panicum hallii HOM05M006597 ORTHO05M008360 3.1e-08 60.5 44 59.1
Zosma05g01810 Zostera marina HOM05M006597 ORTHO05M008360 4.1e-08 60.1 53 49.1
ATR1089G102 Amborella trichopoda HOM05M006597 ORTHO05M008360 1.2e-07 58.5 38 68.4
AT1G14450 Arabidopsis thaliana HOM05M006597 ORTHO05M008360 2.6e-07 57.4 57 47.4
p5.00_sc00034_p0080 Elaeis guineensis HOM05M006597 ORTHO05M008360 2.6e-07 57.4 39 61.5
Solyc01g102830.3 Solanum lycopersicum HOM05M006597 ORTHO05M008360 2.6e-07 57.4 52 50.0
AT2G02510 Arabidopsis thaliana HOM05M006597 ORTHO05M008360 3.5e-07 57.0 57 45.6
CALSI_Maker00047025 Calamus simplicifolius HOM05M006597 ORTHO05M008360 7.7e-07 55.8 39 59.0
TRIDC6AG030120 Triticum dicoccoides HOM05M006597 ORTHO05M008360 7.7e-07 55.8 36 66.7
Asa6G00883 Allium sativum HOM05M006597 ORTHO05M008360 1.0e-06 55.5 45 60.0


User provided reference genes

Program Settings