Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.14G103600 Glycine max HOM05M003397 ORTHO05M004183 5.3e-47 190.3 124 100.0
CALSI_Maker00038647 Calamus simplicifolius HOM05M003397 ORTHO05M004183 2.0e-22 108.6 123 49.6
Zm00007a00049109 Zea mays B104 HOM05M026363 ORTHO05M001882 3.2e-15 84.7 128 42.2
Glyma.17G222200 Glycine max HOM05M003397 ORTHO05M004183 4.1e-15 84.3 52 90.4
Glyma.18G143400 Glycine max HOM05M000888 ORTHO05M001882 1.2e-14 82.8 84 51.2
Glyma.06G062300 Glycine max HOM05M003397 ORTHO05M004183 7.3e-12 73.6 53 73.6
Potri.018G020200 Populus trichocarpa HOM05M003397 ORTHO05M004183 2.8e-11 71.6 52 75.0
ATR0739G094 Amborella trichopoda HOM05M003397 ORTHO05M004183 1.5e-09 65.9 47 74.5
Glyma.04G061600 Glycine max HOM05M003397 ORTHO05M004183 2.0e-09 65.5 51 74.5
GWHGAZTO042501 Oryza alta HOM05M003397 ORTHO05M004183 9.8e-09 63.2 118 40.7
AT5G25150 Arabidopsis thaliana HOM05M003397 ORTHO05M004183 1.3e-08 62.8 47 66.0
Ma09_g22930 Musa acuminata HOM05M003397 ORTHO05M004183 6.4e-08 60.5 47 66.0
Solyc06g065700.3 Solanum lycopersicum HOM05M003397 ORTHO05M004183 1.1e-07 59.7 52 61.5
Potri.006G263400 Populus trichocarpa HOM05M003397 ORTHO05M004183 1.9e-07 58.9 52 63.5
Spipo12G0045000 Spirodela polyrhiza HOM05M003397 ORTHO05M004183 3.2e-07 58.2 48 64.6
evm.TU.AsparagusV1_05.3372.V1.1 Asparagus officinalis HOM05M003397 ORTHO05M004183 4.1e-07 57.8 44 65.9
EJB05_41732 Eragrostis curvula HOM05M003397 ORTHO05M004183 4.1e-07 57.8 41 70.7
SEGI_21073 Sequoiadendron giganteum HOM05M003397 ORTHO05M013398 4.1e-07 57.8 48 62.5
GWHGAZTO088616 Oryza alta HOM05M003397 ORTHO05M004183 5.4e-07 57.4 42 66.7
Bradi1g30900 Brachypodium distachyon HOM05M003397 ORTHO05M004183 7.0e-07 57.0 42 66.7
OB07G15100 Oryza brachyantha HOM05M003397 ORTHO05M004183 7.0e-07 57.0 46 63.0
Asa1G02473 Allium sativum HOM05M003397 ORTHO05M004183 9.2e-07 56.6 50 64.0
Asa1G02490 Allium sativum HOM05M003397 ORTHO05M004183 9.2e-07 56.6 50 64.0
Ma07_g29110 Musa acuminata HOM05M003397 ORTHO05M004183 9.2e-07 56.6 42 69.0
CDE05G3472 Ceratophyllum demersum HOM05M003397 ORTHO05M004183 1.2e-06 56.2 43 65.1
OB06G30550 Oryza brachyantha HOM05M003397 ORTHO05M004183 1.2e-06 56.2 42 66.7
AET5Gv20732100 Aegilops tauschii HOM05M003397 ORTHO05M004183 1.6e-06 55.8 42 64.3
GWHGAORA029287 Cenchrus purpureus HOM05M003397 ORTHO05M004183 1.6e-06 55.8 43 65.1
GWHGAORA057181 Cenchrus purpureus HOM05M003397 ORTHO05M004183 1.6e-06 55.8 43 65.1
Horvu_MOREX_7H01G681000 Hordeum vulgare HOM05M003397 ORTHO05M004183 1.6e-06 55.8 42 64.3
Ot_Chr2_g15753 Oropetium thomaeum HOM05M003397 ORTHO05M004183 1.6e-06 55.8 42 66.7
TraesCS5D03G0731100 Triticum aestivum HOM05M003397 ORTHO05M004183 1.6e-06 55.8 42 64.3
TraesCS7A03G1234000 Triticum aestivum HOM05M003397 ORTHO05M004183 1.6e-06 55.8 42 64.3
TRIDC7AG071220 Triticum dicoccoides HOM05M003397 ORTHO05M004183 1.6e-06 55.8 42 64.3
TRITD7Av1G263820 Triticum turgidum HOM05M003397 ORTHO05M004183 1.6e-06 55.8 42 64.3
V3.Lp_chr4_0G7120 Lolium perenne HOM05M003397 ORTHO05M004183 2.0e-06 55.5 42 64.3
OsKitaake07g067500 Oryza sativa Kitaake HOM05M003397 ORTHO05M004183 2.0e-06 55.5 40 70.0
Seita.4G196300 Setaria italica HOM05M003397 ORTHO05M004183 2.0e-06 55.5 43 65.1
Sevir.4G205900 Setaria viridis HOM05M003397 ORTHO05M004183 2.0e-06 55.5 43 65.1
Zosma03g06410 Zostera marina HOM05M003397 ORTHO05M004183 2.7e-06 55.1 43 65.1
Mapoly0009s0169 Marchantia polymorpha HOM05M003397 ORTHO05M004183 3.5e-06 54.7 44 65.9
PH02Gene13854 Phyllostachys edulis HOM05M003397 ORTHO05M004183 4.6e-06 54.3 42 64.3
TraesCS7B03G1120600 Triticum aestivum HOM05M003397 ORTHO05M004183 4.6e-06 54.3 42 61.9
HPP92_014401 Vanilla planifolia HOM05M003397 ORTHO05M004183 6.0e-06 53.9 44 61.4


User provided reference genes

Program Settings