Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
GWHGASIY014770 Secale cereale HOM05M004425 ORTHO05M006005 3.1e-240 833.9 418 100.0
Horvu_MOREX_3H01G257300 Hordeum vulgare HOM05M004425 ORTHO05M006005 1.6e-236 821.6 418 98.3
AET3Gv20430100 Aegilops tauschii HOM05M004425 ORTHO05M006005 4.8e-233 810.1 418 97.4
TraesCS3D03G0423000 Triticum aestivum HOM05M004425 ORTHO05M006005 4.8e-233 810.1 418 97.4
TRIDC3AG026770 Triticum dicoccoides HOM05M004425 ORTHO05M006005 4.8e-233 810.1 418 97.4
TRIDC3BG030270 Triticum dicoccoides HOM05M004425 ORTHO05M006005 1.1e-232 808.9 418 97.1
TraesCS3B03G0532100 Triticum aestivum HOM05M004425 ORTHO05M006005 9.0e-232 805.8 418 96.9
TRITD3Bv1G095710 Triticum turgidum HOM05M004425 ORTHO05M006005 9.0e-232 805.8 418 96.9
V3.Lp_chr3_0G10816 Lolium perenne HOM05M004425 ORTHO05M006005 1.5e-231 805.1 418 95.7
TRITD3Av1G097980 Triticum turgidum HOM05M004425 ORTHO05M006005 3.5e-228 793.9 418 96.4
TraesCS3A03G0460600 Triticum aestivum HOM05M004425 ORTHO05M006005 2.0e-210 734.9 363 99.7
PH02Gene16028 Phyllostachys edulis HOM05M004425 ORTHO05M006005 1.8e-208 728.4 420 87.1
GWHGAZTO040095 Oryza alta HOM05M004425 ORTHO05M006005 7.7e-207 723.0 417 87.8
Seita.5G040100 Setaria italica HOM05M004425 ORTHO05M006005 1.3e-206 722.2 419 87.8
Sevir.5G037900 Setaria viridis HOM05M004425 ORTHO05M006005 1.3e-206 722.2 419 87.8
Zjn_sc00043.1.g03030.1.am.mkhc Zoysia japonica ssp. nagirizaki HOM05M004425 ORTHO05M006005 5.0e-206 720.3 419 87.8
Dexi5B01G0013420 Digitaria exilis HOM05M004425 ORTHO05M006005 9.4e-205 716.1 419 86.4
Ot_Chr3_g18018 Oropetium thomaeum HOM05M004425 ORTHO05M006005 9.4e-205 716.1 418 87.1
GWHGAZTO054477 Oryza alta HOM05M004425 ORTHO05M006005 1.2e-204 715.7 418 87.1
OsKitaake01g126800 Oryza sativa Kitaake HOM05M004425 ORTHO05M006005 1.2e-204 715.7 417 87.5
OsR498G0100668500.01 Oryza sativa ssp. indica HOM05M004425 ORTHO05M006005 1.2e-204 715.7 417 87.5
Os01g0279100 Oryza sativa ssp. japonica HOM05M004425 ORTHO05M006005 1.2e-204 715.7 417 87.5
Sspon.03G0016540-1A Saccharum spontaneum HOM05M004425 ORTHO05M006005 2.1e-204 714.9 417 87.3
Sspon.03G0016540-1T Saccharum spontaneum HOM05M004425 ORTHO05M006005 2.1e-204 714.9 417 87.3
Misin05G129500 Miscanthus sinensis HOM05M004425 ORTHO05M006005 2.7e-204 714.5 417 87.3
Sspon.03G0016540-3D Saccharum spontaneum HOM05M004425 ORTHO05M006005 3.6e-204 714.1 417 87.1
Sspon.03G0016540-2C Saccharum spontaneum HOM05M004425 ORTHO05M006005 4.7e-204 713.8 417 87.1
GWHGAORA032996 Cenchrus purpureus HOM05M004425 ORTHO05M006005 1.4e-203 712.2 422 87.4
Dexi5A01G0013160 Digitaria exilis HOM05M004425 ORTHO05M006005 1.4e-203 712.2 419 86.2
Misin06G112500 Miscanthus sinensis HOM05M004425 ORTHO05M006005 4.0e-203 710.7 417 86.8
Pahal.5G410000 Panicum hallii HOM05M004425 ORTHO05M006005 4.0e-203 710.7 418 87.6
Sobic.003G132100 Sorghum bicolor HOM05M004425 ORTHO05M006005 1.1e-202 709.1 417 86.8
Zm00001eb332650 Zea mays B73 HOM05M004425 ORTHO05M006005 3.3e-202 707.6 418 86.6
Zm00007a00046548 Zea mays B104 HOM05M004425 ORTHO05M006005 4.4e-202 707.2 418 86.6
Zm00001eb129000 Zea mays B73 HOM05M004425 ORTHO05M006005 1.0e-198 696.0 417 85.4
OB01G21420 Oryza brachyantha HOM05M004425 ORTHO05M006005 6.5e-198 693.3 420 84.5
GWHGAORA041993 Cenchrus purpureus HOM05M004425 ORTHO05M006005 5.5e-197 690.3 357 93.8
EJB05_32415 Eragrostis curvula HOM05M004425 ORTHO05M006005 2.6e-194 681.4 429 82.8
Ma10_g05100 Musa acuminata HOM05M004425 ORTHO05M006005 2.0e-191 671.8 405 82.2
Spipo3G0020600 Spirodela polyrhiza HOM05M004425 ORTHO05M006005 3.5e-191 671.0 392 85.5
p5.00_sc02735_p0001 Elaeis guineensis HOM05M004425 ORTHO05M006005 2.9e-190 667.9 377 85.9
Ma03_g26250 Musa acuminata HOM05M004425 ORTHO05M006005 3.8e-190 667.5 380 85.8
MBI13_g30268_MAGBIO Magnolia biondii HOM05M004425 ORTHO05M006005 5.0e-190 667.2 377 86.2
Aco001729 Ananas comosus HOM05M004425 ORTHO05M006005 6.5e-190 666.8 436 78.2
evm.TU.AsparagusV1_07.1703.V1.1 Asparagus officinalis HOM05M004425 ORTHO05M006005 8.5e-190 666.4 391 84.4
CDE02G2354 Ceratophyllum demersum HOM05M004425 ORTHO05M006005 1.1e-189 666.0 403 81.1
CALSI_Maker00031787 Calamus simplicifolius HOM05M004425 ORTHO05M006005 3.2e-189 664.5 382 85.6
Glyma.03G119500 Glycine max HOM05M004425 ORTHO05M006005 5.5e-189 663.7 390 83.6
Asa4G04506 Allium sativum HOM05M004425 ORTHO05M006005 3.6e-188 661.0 419 81.4
Potri.006G027300 Populus trichocarpa HOM05M004425 ORTHO05M006005 4.7e-188 660.6 375 86.4
HPP92_000696 Vanilla planifolia HOM05M004425 ORTHO05M006005 2.0e-186 655.2 391 82.6
Zosma01g42930 Zostera marina HOM05M004425 ORTHO05M006005 1.3e-185 652.5 375 85.3
ATR1096G103 Amborella trichopoda HOM05M004425 ORTHO05M006005 2.8e-185 651.4 397 81.6
SEGI_29193 Sequoiadendron giganteum HOM05M004425 ORTHO05M006005 2.8e-185 651.4 359 87.5
Potri.016G025000 Populus trichocarpa HOM05M004425 ORTHO05M006005 6.3e-185 650.2 375 85.1
DDU044G0001 Dioscorea dumetorum HOM05M004425 ORTHO05M006005 4.1e-184 647.5 368 85.3
DDU059G0095 Dioscorea dumetorum HOM05M004425 ORTHO05M006005 4.1e-184 647.5 368 85.3
Solyc10g077040.2 Solanum lycopersicum HOM05M004425 ORTHO05M006005 1.3e-182 642.5 385 82.6
Bradi2g10770 Brachypodium distachyon HOM05M004425 ORTHO05M006005 7.0e-176 620.2 335 93.4
Mapoly0124s0017 Marchantia polymorpha HOM05M004425 ORTHO05M006005 5.0e-174 614.0 414 73.9
SMO119G0375 Selaginella moellendorffii HOM05M004425 ORTHO05M006005 2.8e-172 608.2 364 79.4
Pp3c11_7910 Physcomitrium patens HOM05M004425 ORTHO05M006005 3.6e-172 607.8 411 72.7
AT3G56940 Arabidopsis thaliana HOM05M004425 ORTHO05M006005 1.0e-171 606.3 333 87.4
AagrBONN_evm.TU.Sc2ySwM_228.50 Anthoceros agrestis HOM05M004425 ORTHO05M006005 2.3e-171 605.1 358 80.2
CDE04G3757 Ceratophyllum demersum HOM05M004425 ORTHO05M006005 4.4e-170 600.9 366 79.8
DDU059G0404 Dioscorea dumetorum HOM05M004425 ORTHO05M006005 1.9e-168 595.5 414 71.7
DDU063G0027 Dioscorea dumetorum HOM05M004425 ORTHO05M006005 1.3e-166 589.3 377 76.4
Sspon.03G0016540-2T Saccharum spontaneum HOM05M004425 ORTHO05M006005 3.2e-160 568.2 329 86.9
Cre12.g510050 Chlamydomonas reinhardtii HOM05M004425 ORTHO05M006005 9.6e-149 530.0 391 65.7
DDU063G0025 Dioscorea dumetorum HOM05M004425 ORTHO05M006005 1.2e-148 529.6 368 72.3
PRCOL_00006479 Prasinoderma coloniale HOM05M004425 ORTHO05M006005 1.2e-148 529.6 357 70.3
Pp3c7_26570 Physcomitrium patens HOM05M004425 ORTHO05M006005 5.6e-141 504.2 307 80.8
HPP92_000650 Vanilla planifolia HOM05M004425 ORTHO05M006005 2.4e-139 498.8 302 80.5
MCO13G411 Micromonas commoda HOM05M004425 ORTHO05M006005 1.3e-137 493.0 345 68.7
Zm00007a00013946 Zea mays B104 HOM05M004425 ORTHO05M006005 2.4e-136 488.8 306 83.3
SMO115G0161 Selaginella moellendorffii HOM05M004425 ORTHO05M006005 6.6e-134 480.7 364 65.1
Cre07.g346050 Chlamydomonas reinhardtii HOM05M004425 ORTHO05M006005 7.6e-130 467.2 386 61.4
Glyma.19G123800 Glycine max HOM05M004425 ORTHO05M006005 1.0e-126 456.8 268 84.3
Ma08_g05620 Musa acuminata HOM05M004425 ORTHO05M006005 5.5e-120 434.5 255 83.1
CDE02G0342 Ceratophyllum demersum HOM05M004425 ORTHO05M006005 9.6e-117 423.7 239 83.3
CBR_g50688 Chara braunii HOM05M004425 ORTHO05M006005 6.7e-102 374.4 266 69.9
CBR_g55376 Chara braunii HOM05M004425 ORTHO05M087701 2.2e-52 209.9 381 36.2
SEGI_05566 Sequoiadendron giganteum HOM05M004425 ORTHO05M024043 2.0e-45 186.8 118 78.0
SEGI_20922 Sequoiadendron giganteum HOM05M004425 ORTHO05M024043 2.6e-45 186.4 118 77.1
Pp3c2_30650 Physcomitrium patens HOM05M004425 ORTHO05M006005 9.9e-37 157.9 101 76.2
CDE02G4696 Ceratophyllum demersum HOM05M004425 ORTHO05M024043 2.1e-31 140.2 94 70.2
AagrBONN_evm.TU.Sc2ySwM_368.2127 Anthoceros agrestis HOM05M004425 ORTHO05M006005 1.3e-23 114.4 59 88.1
AagrBONN_evm.TU.Sc2ySwM_344.4282 Anthoceros agrestis HOM05M004425 ORTHO05M001230 3.8e-20 102.8 59 84.7
SEGI_00644 Sequoiadendron giganteum HOM05M004425 ORTHO05M239744 4.5e-13 79.3 42 92.9
Misin05G405700 Miscanthus sinensis HOM05M004425 ORTHO05M145899 5.8e-13 79.0 105 53.3


User provided reference genes

Program Settings