Gene: Solyc04g064700.4

General Information

Structural Information

  • Species Solanum lycopersicum
  • Gene Identifier Solyc04g064700.4
  • Transcript Identifier Solyc04g064700.4.1
  • Gene Type Coding gene
  • Location SL4.0ch04 : 55186354-55200185 : positive

Gene Family Information

  • ID HOM05D001605
  • #Genes/#Species 401/100
  • Phylogenetic origin

Gene Duplication Information

Labels

Identifiers

  • tid Solyc04g064700.4.1
  • uniprot A0A3Q7G3C5
  • gene_id Solyc04g064700

Descriptions

  • Description Transcription elongation factor SPT5 (AHRD V3.3 *** A0A2G3CM29_CAPCH)
  • Loading (ortholog descriptions from ath)...

Functional Annotation

Biological Process

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0006355
IEA
GOA Databaseregulation of transcription, DNA-templated
GO:0006355
IEA
InterProregulation of transcription, DNA-templated
GO:0006357
IBA
IEA
GOA Databaseregulation of transcription by RNA polymerase II
GO:0006357
IEA
InterProregulation of transcription by RNA polymerase II
GO:0032784
IEA
GOA Databaseregulation of DNA-templated transcription, elongation
GO:0032784
IEA
InterProregulation of DNA-templated transcription, elongation
GO:0006412
IEA
GOA Databasetranslation
GO:0006368
IBA
GOA Databasetranscription elongation from RNA polymerase II promoter

Molecular Function

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0003735
IEA
GOA Databasestructural constituent of ribosome
GO:0003729
IBA
GOA DatabasemRNA binding

Cellular Component

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0005634
IEA
GOA Databasenucleus
GO:0016021
IEA
GOA Databaseintegral component of membrane
GO:0016020
IEA
GOA Databasemembrane
GO:0005840
IEA
GOA Databaseribosome
GO:0032044
IBA
GOA DatabaseDSIF complex

Color Legend

Experimental Evidence
Computational Reviewed Evidence
Electronic Evidence
GO Sources: Primary Orthology Homology
Show redundant parents:
InterPro Description
IPR041978 Spt5, KOW domain repeat 5
IPR005824 KOW
IPR014722 Ribosomal protein L2, domain 2
IPR036735 NusG, N-terminal domain superfamily
IPR041977 Spt5, KOW domain repeat 4
IPR039385 NGN domain, eukaryotic
IPR005100 NGN domain
IPR008991 Translation protein SH3-like domain superfamily
IPR041973 Spt5, KOW domain repeat 1
IPR022581 Spt5 transcription elongation factor, N-terminal
IPR039659 Transcription elongation factor SPT5
IPR006645 NusG, N-terminal
IPR017071 Transcription elongation factor Spt5, eukaryote
IPR041976 Spt5, KOW domain repeat 3
IPR041980 Spt5, KOW domain repeat 6
IPR041975 Spt5, KOW domain repeat 2
Mapman id Description
15.3.5.3.2 RNA biosynthesis.RNA polymerase II-dependent transcription.transcription elongation.SPT4-SPT5 transcription elongation complex.component SPT5