Gene: AT3G52180

General Information

Structural Information

  • Species Arabidopsis thaliana
  • Gene Identifier AT3G52180
  • Transcript Identifier AT3G52180.1
  • Gene Type Coding gene
  • Location Chr3 : 19349884-19353459 : negative

Gene Family Information

Gene Duplication Information

Labels

Identifiers

  • tid AT3G52180.1
  • symbol SEX4
  • Alias ATPTPKIS1,ATSEX4,DSP4,DUAL-SPECIFICITY PROTEIN PHOSPHATASE 4
  • full_name STARCH-EXCESS 4
  • uniprot Q9FEB5

Descriptions

  • Description dual specificity protein phosphatase (DsPTP1) family protein
  • Computational description STARCH-EXCESS 4 (SEX4); FUNCTIONS IN: protein tyrosine/serine/threonine phosphatase activity, polysaccharide binding; INVOLVED IN: protein amino acid dephosphorylation, starch metabolic process, starch catabolic process; LOCATED IN: chloroplast stroma, chloroplast; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Dual-specific/protein-tyrosine phosphatase, conserved region (InterPro:IPR000387), Dual specificity phosphatase, catalytic domain (InterPro:IPR000340); BEST Arabidopsis thaliana protein match is: dual specificity protein phosphatase (DsPTP1) family protein (TAIR:AT3G10940.1); Has 675 Blast hits to 675 proteins in 103 species: Archae - 6; Bacteria - 6; Metazoa - 399; Fungi - 10; Plants - 178; Viruses - 3; Other Eukaryotes - 73 (source: NCBI BLink).
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Functional Annotation

Biological Process

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0005983
IDA, IMP
IBA
Gene Ontologystarch catabolic process1 2 3
GO:0005975
IEA
GOA Databasecarbohydrate metabolic process
GO:0046838
IBA
Gene Ontologyphosphorylated carbohydrate dephosphorylation2
GO:0016311
IEA
GOA Databasedephosphorylation
GO:0016311
IEA
InterProdephosphorylation
GO:0006470
IEA
Gene Ontologyprotein dephosphorylation
GO:0006470
IEA
InterProprotein dephosphorylation
GO:0005982
IMP
TAS, IEA
Gene Ontologystarch metabolic process4 5
GO:0005982
IEA
InterProstarch metabolic process
GO:0007623
IEA
Gene Ontologycircadian rhythm
GO:0007623
IEA
InterProcircadian rhythm

Molecular Function

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0004721
IEA
GOA Databasephosphoprotein phosphatase activity
GO:0019203
IDA
IBA
IEA
Gene Ontologycarbohydrate phosphatase activity2 6
GO:0019203
IEA
InterProcarbohydrate phosphatase activity
GO:2001070
IBA
Gene Ontologystarch binding2
GO:0016787
IEA
GOA Databasehydrolase activity
GO:0016791
IEA
GOA Databasephosphatase activity
GO:0008138
IEA
Gene Ontologyprotein tyrosine/serine/threonine phosphatase activity
GO:0008138
IEA
InterProprotein tyrosine/serine/threonine phosphatase activity
GO:0005515
IPI
Gene Ontologyprotein binding7
GO:0030247
IDA
Gene Ontologypolysaccharide binding5
GO:2001066
IDA
Gene Ontologyamylopectin binding3

Cellular Component

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0009507
IEA
GOA Databasechloroplast
GO:0009507
IDA, HDA
ISM, IBA
Gene Ontologychloroplast2 5 8
GO:0009570
IDA
GOA Databasechloroplast stroma
GO:0009570
HDA
Gene Ontologychloroplast stroma9
GO:0009536
IEA
GOA Databaseplastid
GO:0005737
ISM
Gene Ontologycytoplasm

Color Legend

Experimental Evidence
Computational Reviewed Evidence
Electronic Evidence
GO Sources: Primary Orthology Homology
Show redundant parents:
InterPro Description
IPR014756 Immunoglobulin E-set
IPR029021 Protein-tyrosine phosphatase-like
IPR000340 Dual specificity phosphatase, catalytic domain
IPR020422 Dual specificity protein phosphatase domain
IPR032640 AMP-activated protein kinase, glycogen-binding domain
IPR013783 Immunoglobulin-like fold
IPR030079 Phosphoglucan phosphatase DSP4
Mapman id Description
3.2.3.2.1 Carbohydrate metabolism.starch metabolism.degradation.dephosphorylation.phosphoglucan phosphatase (SEX4)