Functional clusters

Information

  • Type MapMan
  • Description Cell cycle organisation.mitosis and meiosis.sister chromatid separation.cohesin establishment.cohesin cofactor (WAPL)

Cluster overview

Species Chromosome Experiment Cluster id Cluster size Number of genes E-value
Amborella trichopoda AmTr_v1.0_scaffold00013 1 CH_atr_246 2 2 0.000238322
Brassica carinata ChrC05 1 CH_bca_754 2 3 0.000192384
Camellia sinensis var. sinensis Chr8 1 CH_camsi_248 3 3 0.0000000630811
Camellia sinensis var. sinensis Chr8 1 CH_camsi_298 3 4 0.000000252306
Carica papaya supercontig_27 1 CH_cpa_185 2 2 0.0000950661
Erigeron canadensis Conyza_canadensis_scaffold:3 1 CH_eca_257 2 2 0.0000448722
Lotus japonicus chr6 1 CH_lja_124 3 4 0.000000122717
Physcomitrium patens Chr09 1 CH_ppa_81 2 2 0.0000612726
Salix brachista GWHAAZH00000004 1 CH_sbr_272 2 2 0.000189042
Sequoiadendron giganteum chr4 1 CH_sgi_791 2 2 0.0000487151
Sapria himalayana scaffold3_21451142 1 CH_shi_8 4 5 0.00000000000280452
Amborella trichopoda AmTr_v1.0_scaffold00013 2 CH_atr_246 2 2 0.000238322
Brassica carinata ChrC05 2 CH_bca_754 2 3 0.000192384
Camellia sinensis var. sinensis Chr8 2 CH_camsi_248 3 3 0.0000000630811
Camellia sinensis var. sinensis Chr8 2 CH_camsi_298 3 4 0.000000252306
Carica papaya supercontig_27 2 CH_cpa_185 2 2 0.0000950661
Erigeron canadensis Conyza_canadensis_scaffold:3 2 CH_eca_257 2 2 0.0000448722
Lotus japonicus chr6 2 CH_lja_124 3 4 0.000000122717
Physcomitrium patens Chr09 2 CH_ppa_81 2 2 0.0000612726
Salix brachista GWHAAZH00000004 2 CH_sbr_272 2 2 0.000189042
Sequoiadendron giganteum chr4 2 CH_sgi_791 2 2 0.0000487151
Sapria himalayana scaffold3_21451142 2 CH_shi_8 4 5 0.00000000000280452

Functional Clusters Experiments

Exp id Data type Data filter Min genes cluster Max genes cluster Max cluster size E-value Tandems removal
1 MapMan No filter applied. 2 30 80 0.001
2 MapMan No filter applied. 2 30 80 0.001
3 GO All GO data. 2 30 80 0.001
4 GO All GO data. 2 30 80 0.001
5 InterPro No filter applied. 2 30 80 0.001
6 InterPro No filter applied. 2 30 80 0.001