Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
arahy.Tifrunner.gnm1.ann1.L1AVC7 Arachis hypogaea HOM05D005919 ORTHO05D007176 0.0e+00 1078.9 537 100.0
arahy.Tifrunner.gnm1.ann1.7FR1J2 Arachis hypogaea HOM05D005919 ORTHO05D007176 0.0e+00 1075.8 537 99.8
arahy.Tifrunner.gnm1.ann1.KJ1SMN Arachis hypogaea HOM05D005919 ORTHO05D007176 8.9e-309 1062.8 537 98.5
arahy.Tifrunner.gnm1.ann1.F7IW15 Arachis hypogaea HOM05D005919 ORTHO05D007176 1.9e-287 991.9 533 92.7
arahy.Tifrunner.gnm1.ann1.WJA0QS Arachis hypogaea HOM05D005919 ORTHO05D007176 3.2e-266 921.4 488 92.8
VMungo1215G1350 Vigna mungo HOM05D005919 ORTHO05D007176 7.2e-250 867.1 537 79.7
Phvul.003G151000 Phaseolus vulgaris HOM05D005919 ORTHO05D007176 3.6e-249 864.8 537 79.1
Glyma.13G091700 Glycine max HOM05D005919 ORTHO05D007176 1.5e-247 859.4 537 79.0
Lj4g0016840 Lotus japonicus HOM05D005919 ORTHO05D007176 1.1e-242 843.2 503 81.3
Lalb_Chr12g0199061 Lupinus albus HOM05D005919 ORTHO05D007176 4.0e-240 834.7 531 77.2
Medtr4g129500 Medicago truncatula HOM05D005919 ORTHO05D007176 2.7e-236 822.0 537 76.0
Psat4g048080 Pisum sativum HOM05D005919 ORTHO05D007176 7.7e-236 820.5 535 76.6
TPR.G5290 Trifolium pratense HOM05D005919 ORTHO05D007176 6.5e-235 817.4 542 75.3
Ca_21183_v3 Cicer arietinum L. HOM05D005919 ORTHO05D007176 8.0e-233 810.4 490 79.2
Rhsim01G0012200 Rhododendron simsii HOM05D005919 ORTHO05D007176 1.2e-215 753.4 534 70.8
Actinidia02641 Actinidia chinensis HOM05D005919 ORTHO05D007176 1.7e-214 749.6 532 70.7
Ciclev10007971m.g Citrus clementina HOM05D005919 ORTHO05D007176 3.7e-214 748.4 539 70.3
GSVIVG01023723001 Vitis vinifera HOM05D005919 ORTHO05D007176 3.2e-213 745.3 531 68.7
CANSAT11G0901 Cannabis sativa HOM05D005919 ORTHO05D007176 5.4e-213 744.6 541 69.3
RcHm_v2.0_Chr4g0404951 Rosa chinensis HOM05D005919 ORTHO05D007176 5.4e-213 744.6 521 70.6
FAN12G0251 Fragaria x ananassa HOM05D005919 ORTHO05D007176 7.0e-213 744.2 503 72.2
Prupe.1G097400 Prunus persica HOM05D005919 ORTHO05D007176 2.7e-212 742.3 530 69.8
FvH4_4g09660 Fragaria vesca HOM05D005919 ORTHO05D007176 4.6e-212 741.5 503 72.2
FAN17G2955 Fragaria x ananassa HOM05D005919 ORTHO05D007176 6.6e-211 737.6 510 71.6
FAN12G4285 Fragaria x ananassa HOM05D005919 ORTHO05D007176 8.6e-211 737.3 510 71.2
FAN22G0736 Fragaria x ananassa HOM05D005919 ORTHO05D007176 8.6e-211 737.3 514 70.6
AUR62013597 Chenopodium quinoa HOM05D005919 ORTHO05D007176 1.1e-210 736.9 518 68.0
EL10Ac1g01561 Beta vulgaris HOM05D005919 ORTHO05D007176 1.5e-210 736.5 541 67.3
Atru.chr7.495 Acer truncatum HOM05D005919 ORTHO05D007176 3.6e-209 731.9 516 70.3
Manes.15G095400 Manihot esculenta HOM05D005919 ORTHO05D007176 3.6e-209 731.9 525 70.1
QL02p095651 Quercus lobata HOM05D005919 ORTHO05D007176 3.6e-209 731.9 534 69.1
TAR383G0301 Trochodendron aralioides HOM05D005919 ORTHO05D007176 4.7e-209 731.5 512 69.3
Duzib150G0612 Durio zibethinus HOM05D005919 ORTHO05D007176 2.3e-208 729.2 535 68.8
ECA240G3021 Erigeron canadensis HOM05D005919 ORTHO05D007176 2.3e-208 729.2 528 66.7
Aqoxy7G03239_Aqoxy7G03240 Aquilegia oxysepala HOM05D005919 ORTHO05D007176 8.9e-208 727.2 507 70.6
Hma1.2p1_1531F.1_g289233 Hydrangea macrophylla HOM05D005919 ORTHO05D007176 1.5e-207 726.5 504 69.8
Thecc.09G160900 Theobroma cacao HOM05D005919 ORTHO05D007176 2.0e-207 726.1 530 68.3
HanXRQChr09g0244361 Helianthus annuus HOM05D005919 ORTHO05D007176 2.6e-207 725.7 536 66.8
MD16G1262500 Malus domestica HOM05D005919 ORTHO05D007176 3.4e-207 725.3 518 69.9
Nn2g12541 Nelumbo nucifera HOM05D005919 ORTHO05D007176 2.9e-206 722.2 522 68.2
Cc06_g14010 Coffea canephora HOM05D005919 ORTHO05D007176 1.9e-205 719.5 497 68.0
PSO063G4858 Papaver somniferum HOM05D005919 ORTHO05D007176 1.9e-205 719.5 520 67.5
Sc02g0003990 Simmondsia chinensis HOM05D005919 ORTHO05D007176 1.9e-205 719.5 502 68.9
Cfa013547 Carpinus fangiana HOM05D005919 ORTHO05D007176 2.4e-205 719.2 513 71.2
ClCG09G013740 Citrullus lanatus HOM05D005919 ORTHO05D007176 3.5e-204 715.3 505 68.5
Eucgr.C00228 Eucalyptus grandis HOM05D005919 ORTHO05D007176 1.7e-203 713.0 506 68.8
Aa31LG11G14640 Aethionema arabicum HOM05D005919 ORTHO05D007176 3.9e-203 711.8 505 68.1
TWI53G0694 Tripterygium wilfordii HOM05D005919 ORTHO05D007176 3.9e-203 711.8 518 66.8
Solyc07g006330.2 Solanum lycopersicum HOM05D005919 ORTHO05D007176 7.3e-202 707.6 498 67.9
THA.LOC104819083 Tarenaya hassleriana HOM05D005919 ORTHO05D007176 7.3e-202 707.6 535 65.6
PGR042G2595 Punica granatum HOM05D005919 ORTHO05D007176 9.5e-202 707.2 526 67.1
PGSC0003DMG401011224 Solanum tuberosum HOM05D005919 ORTHO05D007176 9.5e-202 707.2 529 65.2
CAN.G1870.2 Capsicum annuum HOM05D005919 ORTHO05D007176 3.6e-201 705.3 541 64.0
Gohir.A06G079400 Gossypium hirsutum HOM05D005919 ORTHO05D007176 4.7e-201 704.9 534 65.9
Cpa.g.sc42.125 Carica papaya HOM05D005919 ORTHO05D007176 1.4e-200 703.4 501 69.3
CSS0021645 Camellia sinensis var. sinensis HOM05D005919 ORTHO05D007176 3.1e-200 702.2 510 69.2
Gorai.010G092100 Gossypium raimondii HOM05D005919 ORTHO05D007176 4.0e-200 701.8 549 64.3
CsaV3_1G028860 Cucumis sativus L. HOM05D005919 ORTHO05D007176 8.9e-200 700.7 506 68.2
Potri.018G098700 Populus trichocarpa HOM05D005919 ORTHO05D007176 8.9e-200 700.7 513 67.6
Sed0019098 Sechium edule HOM05D005919 ORTHO05D007176 3.4e-199 698.7 504 67.9
MELO3C005285.2 Cucumis melo HOM05D005919 ORTHO05D007176 7.6e-199 697.6 533 65.7
BcaNung03092 Brassica carinata HOM05D005919 ORTHO05D007176 1.1e-197 693.7 507 65.9
MSTRG.26243 Avicennia marina HOM05D005919 ORTHO05D007176 3.2e-197 692.2 537 63.5
Nitab4.5_0005551g0020 Nicotiana tabacum HOM05D005919 ORTHO05D007176 3.2e-197 692.2 512 66.8
Migut.K00275 Erythranthe guttata HOM05D005919 ORTHO05D007176 5.4e-197 691.4 522 65.1
Lj9A728G22 Lonicera japonica HOM05D005919 ORTHO05D007176 5.4e-197 691.4 504 68.3
Nitab4.5_0005985g0040 Nicotiana tabacum HOM05D005919 ORTHO05D007176 3.5e-196 688.7 512 65.4
Haze_22168 Corylus avellana HOM05D005919 ORTHO05D007176 1.7e-195 686.4 521 68.3
Peaxi162Scf00525g00821 Petunia axillaris HOM05D005919 ORTHO05D007176 3.0e-195 685.6 498 67.1
Lsat_1_v5_gn_7_51941 Lactuca sativa HOM05D005919 ORTHO05D007176 3.9e-195 685.3 531 63.5
AL6G25620 Arabidopsis lyrata HOM05D005919 ORTHO05D007176 5.1e-195 684.9 538 62.5
Oeu035674.1 Olea europaea HOM05D005919 ORTHO05D007176 1.5e-194 683.3 504 66.9
BolC2t06667H Brassica oleracea HOM05D005919 ORTHO05D007176 4.3e-194 681.8 527 63.8
Sp6g29230 Schrenkiella parvula HOM05D005919 ORTHO05D007176 4.3e-194 681.8 545 63.3
Thhalv10013155m.g Eutrema salsugineum HOM05D005919 ORTHO05D007176 5.6e-194 681.4 505 65.7
BcaC03g13443 Brassica carinata HOM05D005919 ORTHO05D007176 2.8e-193 679.1 541 62.5
A02p02750 Brassica napus HOM05D005919 ORTHO05D007176 1.4e-192 676.8 512 64.8
Carub.0006s1300 Capsella rubella HOM05D005919 ORTHO05D007176 8.9e-192 674.1 536 61.9
BraA02t05246Z Brassica rapa HOM05D005919 ORTHO05D007176 4.4e-191 671.8 553 62.0
ATR0824G006 Amborella trichopoda HOM05D005919 ORTHO05D007176 6.6e-187 657.9 543 61.1
C02p07360 Brassica napus HOM05D005919 ORTHO05D007176 2.8e-185 652.5 492 64.8
AT5G14850 Arabidopsis thaliana HOM05D005919 ORTHO05D007176 2.4e-184 649.4 516 62.6
SHI02981 Sapria himalayana HOM05D005919 ORTHO05D007176 3.1e-184 649.0 476 66.8
HPP92_021127 Vanilla planifolia HOM05D005919 ORTHO05D007176 5.3e-184 648.3 544 60.5
PSO782G2448 Papaver somniferum HOM05D005919 ORTHO05D007176 5.8e-183 644.8 485 64.7
Dinv43316 Davidia involucrata HOM05D005919 ORTHO05D007176 7.6e-183 644.4 458 70.7
Zm00001eb229730 Zea mays HOM05D005919 ORTHO05D007176 5.1e-179 631.7 512 60.2
Dinv41305 Davidia involucrata HOM05D005919 ORTHO05D007176 4.0e-176 622.1 418 73.7
Os01g0580100 Oryza sativa ssp. japonica HOM05D005919 ORTHO05D007176 1.6e-169 600.1 485 61.9
Hund26692 Selenicereus undatus HOM05D005919 ORTHO05D007176 1.1e-168 597.4 590 53.7
DCAR_011759 Daucus carota HOM05D005919 ORTHO05D007176 1.0e-166 590.9 420 68.3
Mapoly0152s0016 Marchantia polymorpha HOM05D005919 ORTHO05D007176 2.2e-166 589.7 534 53.9
SGA_v2.0_scaffold7G04062 Striga asiatica HOM05D005919 ORTHO05D007176 9.3e-165 584.3 507 59.4
SalBow1G6099 Salvia bowleyana HOM05D005919 ORTHO05D007176 1.4e-157 560.5 427 63.9
Pp3c10_23620 Physcomitrium patens HOM05D005919 ORTHO05D007176 3.9e-155 552.4 530 52.8
Pp3c10_23630 Physcomitrium patens HOM05D005919 ORTHO05D007176 3.9e-155 552.4 530 52.8
CiPaw.07G186600 Carya illinoinensis HOM05D005919 ORTHO05D007176 2.0e-151 540.0 378 69.6
SMO172G0226 Selaginella moellendorffii HOM05D005919 ORTHO05D007176 2.2e-150 536.6 476 55.7
Oeu031853.1 Olea europaea HOM05D005919 ORTHO05D007176 1.1e-149 534.3 392 66.6
Hma1.2p1_1531F.1_g289236 Hydrangea macrophylla HOM05D005919 ORTHO05D007176 5.5e-149 531.9 418 63.9
Sopen07g002420 Solanum pennellii HOM05D005919 ORTHO05D007176 1.1e-146 524.2 375 68.0
Zm00001eb229670 Zea mays HOM05D005919 ORTHO05D007176 2.5e-146 523.1 438 58.9
CARHR198500 Cardamine hirsuta HOM05D005919 ORTHO05D007176 2.4e-136 490.0 380 64.7
CDE02G0068 Ceratophyllum demersum HOM05D005919 ORTHO05D007176 3.1e-136 489.6 377 63.7
Dinv42785 Davidia involucrata HOM05D005919 ORTHO05D007176 5.3e-136 488.8 342 71.3
arahy.Tifrunner.gnm1.ann1.IETZ0A Arachis hypogaea HOM05D005919 ORTHO05D007176 8.2e-129 464.9 243 96.7
FAN07G1390 Fragaria x ananassa HOM05D005919 ORTHO05D007176 1.8e-128 463.8 476 54.6
SGA_v2.0_scaffold87G27166 Striga asiatica HOM05D005919 ORTHO05D007176 1.1e-125 454.5 487 51.7
Gohir.D06G079000 Gossypium hirsutum HOM05D005919 ORTHO05D007176 5.2e-123 445.7 536 47.9
vmacro13072 Vaccinium macrocarpon HOM05D005919 ORTHO05D007176 8.8e-123 444.9 514 49.8
MD13G1260800 Malus domestica HOM05D005919 ORTHO05D007176 5.9e-119 432.2 428 54.2
arahy.Tifrunner.gnm1.ann1.I3IQB6 Arachis hypogaea HOM05D005919 ORTHO05D007176 5.5e-117 425.6 240 88.8
COL.COLO4_04535 Corchorus olitorius HOM05D005919 ORTHO05D007176 8.6e-110 401.7 281 69.4
arahy.Tifrunner.gnm1.ann1.8I3VMK Arachis hypogaea HOM05D005919 ORTHO05D007176 4.3e-93 346.3 204 85.8
MCO09G503 Micromonas commoda HOM05D005919 ORTHO05D007176 1.6e-87 327.8 457 40.3
Glyma.17G068567 Glycine max HOM05D005919 ORTHO05D007176 2.2e-81 307.4 189 79.4
Glyma.17G068633 Glycine max HOM05D005919 ORTHO05D007176 1.7e-57 228.0 165 69.1
PRCOL_00000120 Prasinoderma coloniale HOM05D000722 ORTHO05D007176 2.9e-49 200.7 496 31.7
Psat4g010400 Pisum sativum HOM05D005919 ORTHO05D007176 3.2e-48 197.2 141 70.9
Actinidia20955 Actinidia chinensis HOM05D005919 ORTHO05D007176 2.7e-47 194.1 126 73.0
Sabra18G0085400 Salix brachista HOM05D005919 ORTHO05D007176 4.6e-47 193.4 165 59.4
AUR62026693 Chenopodium quinoa HOM05D005919 ORTHO05D007176 3.9e-46 190.3 118 72.9
CDE02G3325 Ceratophyllum demersum HOM05D005919 ORTHO05D007176 5.5e-40 169.9 121 61.2
Zm00001eb050560 Zea mays HOM05D005919 ORTHO05D007176 4.8e-28 130.2 107 58.9
Zm00001eb260780 Zea mays HOM05D005919 ORTHO05D007176 4.8e-28 130.2 107 58.9
Zm00001eb302550 Zea mays HOM05D005919 ORTHO05D007176 4.8e-28 130.2 107 58.9
GSVIVG01023746001 Vitis vinifera HOM05D005919 ORTHO05D007176 4.5e-26 123.6 89 62.9
DCAR_017944 Daucus carota HOM05D005919 ORTHO05D007176 1.0e-25 122.5 131 54.2
Rhsim01G0011300 Rhododendron simsii HOM05D005919 ORTHO05D007176 3.9e-22 110.5 75 68.0
AL1G16380 Arabidopsis lyrata HOM05D005919 ORTHO05D007176 9.1e-19 99.4 78 62.8
Actinidia15384 Actinidia chinensis HOM05D005919 ORTHO05D007176 5.9e-18 96.7 85 55.3
Psat4g048040 Pisum sativum HOM05D005919 ORTHO05D007176 2.8e-12 77.8 73 58.9
SMO145G0125 Selaginella moellendorffii HOM05D009274 ORTHO05D011512 2.7e-10 71.2 290 28.3
Migut.B01508 Erythranthe guttata HOM05D006213 ORTHO05D008107 1.9e-08 65.1 208 26.4
SMO117G0345 Selaginella moellendorffii HOM05D006213 ORTHO05D008107 1.9e-08 65.1 220 25.5
PSO837G0013 Papaver somniferum HOM05D006213 ORTHO05D008107 2.5e-08 64.7 280 23.6
PSO017G1536 Papaver somniferum HOM05D006213 ORTHO05D008107 7.2e-08 63.2 278 23.0
TPR.G32127 Trifolium pratense HOM05D006213 ORTHO05D008107 7.2e-08 63.2 102 36.3
Lj2g0022411 Lotus japonicus HOM05D006213 ORTHO05D008107 1.6e-07 62.0 101 35.6
ECA234G2079 Erigeron canadensis HOM05D006213 ORTHO05D008107 2.1e-07 61.6 101 36.6
HPP92_020680 Vanilla planifolia HOM05D006213 ORTHO05D008107 2.1e-07 61.6 208 25.5
SalBow5G4694 Salvia bowleyana HOM05D006213 ORTHO05D008107 2.7e-07 61.2 296 22.6
GSVIVG01018298001 Vitis vinifera HOM05D006213 ORTHO05D008107 2.7e-07 61.2 108 32.4
Actinidia30939 Actinidia chinensis HOM05D006213 ORTHO05D008107 3.6e-07 60.8 104 33.7
TAR374G1216 Trochodendron aralioides HOM05D006213 ORTHO05D008107 3.6e-07 60.8 105 32.4
Prupe.2G122100 Prunus persica HOM05D006213 ORTHO05D008107 4.7e-07 60.5 104 34.6
PGR042G3832 Punica granatum HOM05D006213 ORTHO05D008107 4.7e-07 60.5 205 26.3
QL04p029079 Quercus lobata HOM05D006213 ORTHO05D008107 4.7e-07 60.5 105 32.4
TWI14G1148 Tripterygium wilfordii HOM05D006213 ORTHO05D008107 4.7e-07 60.5 271 26.2
Medtr8g007345 Medicago truncatula HOM05D006213 ORTHO05D008107 6.1e-07 60.1 217 28.1
Nitab4.5_0004837g0040 Nicotiana tabacum HOM05D006213 ORTHO05D008107 6.1e-07 60.1 210 28.6
Pp3c18_21620 Physcomitrium patens HOM05D006213 ORTHO05D008107 6.1e-07 60.1 274 25.2
arahy.Tifrunner.gnm1.ann1.SKJX1Q Arachis hypogaea HOM05D006213 ORTHO05D008107 8.0e-07 59.7 271 25.8
BcaC07g38821 Brassica carinata HOM05D005597 ORTHO05D007304 8.0e-07 59.7 405 23.2
C08p17610 Brassica napus HOM05D005597 ORTHO05D007304 8.0e-07 59.7 405 23.2
PGSC0003DMG402031172 Solanum tuberosum HOM05D006213 ORTHO05D008107 8.0e-07 59.7 208 26.4
CAN.G1585.8 Capsicum annuum HOM05D006213 ORTHO05D008107 1.0e-06 59.3 217 28.1
BolC8t49386H Brassica oleracea HOM05D005597 ORTHO05D007304 1.4e-06 58.9 405 23.2
Glyma.03G108200 Glycine max HOM05D006213 ORTHO05D008107 1.4e-06 58.9 229 26.2
Gohir.D08G160600 Gossypium hirsutum HOM05D006213 ORTHO05D008107 1.4e-06 58.9 104 33.7
Gorai.004G166900 Gossypium raimondii HOM05D006213 ORTHO05D008107 1.4e-06 58.9 104 33.7
Lj9A554T27 Lonicera japonica HOM05D006213 ORTHO05D008107 1.8e-06 58.5 101 33.7
Glyma.07G119300 Glycine max HOM05D006213 ORTHO05D008107 2.3e-06 58.2 191 26.7
Aa31LG1G11550 Aethionema arabicum HOM05D006213 ORTHO05D008107 3.0e-06 57.8 211 31.3
Lalb_Chr12g0210581 Lupinus albus HOM05D006213 ORTHO05D008107 4.0e-06 57.4 270 26.3
MSTRG.20674 Avicennia marina HOM05D006213 ORTHO05D008107 5.2e-06 57.0 208 25.0
Phvul.010G045600 Phaseolus vulgaris HOM05D006213 ORTHO05D008107 5.2e-06 57.0 217 26.7
Lsat_1_v5_gn_4_39261 Lactuca sativa HOM05D006213 ORTHO05D008107 6.8e-06 56.6 315 24.4
SEGI_13726 Sequoiadendron giganteum HOM05D006213 ORTHO05D008107 6.8e-06 56.6 108 31.5


User provided reference genes

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