Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc02g068210.1 Solanum lycopersicum HOM05D000027 ORTHO05D001163 2.6e-24 114.4 52 100.0
PGSC0003DMG400009439 Solanum tuberosum HOM05D000027 ORTHO05D001163 7.0e-17 89.7 45 91.1
PGSC0003DMG400009410 Solanum tuberosum HOM05D000027 ORTHO05D001163 1.5e-14 82.0 45 82.2
PGSC0003DMG400009413 Solanum tuberosum HOM05D000027 ORTHO05D001163 2.7e-13 77.8 45 77.8
Sopen02g017320 Solanum pennellii HOM05D000027 ORTHO05D001163 1.0e-12 75.9 46 78.3
PGSC0003DMG400009412 Solanum tuberosum HOM05D000027 ORTHO05D001163 4.0e-12 73.9 45 73.3
PGSC0003DMG400009409 Solanum tuberosum HOM05D000027 ORTHO05D001163 5.2e-12 73.6 45 80.0
Lsat_1_v5_gn_5_174540 Lactuca sativa HOM05D000027 ORTHO05D001163 3.5e-08 60.8 35 71.4
Thecc.09G356600 Theobroma cacao HOM05D000027 ORTHO05D001163 4.5e-08 60.5 38 63.2
Thecc.09G356300 Theobroma cacao HOM05D000027 ORTHO05D001163 7.7e-08 59.7 41 56.1
Actinidia23860 Actinidia chinensis HOM05D000027 ORTHO05D001163 1.0e-07 59.3 51 52.9
Potri.009G077200 Populus trichocarpa HOM05D000027 ORTHO05D001163 1.0e-07 59.3 34 67.6
Prupe.6G050000 Prunus persica HOM05D000027 ORTHO05D001163 1.7e-07 58.5 39 56.4
Cpa.g.sc2.368 Carica papaya HOM05D000027 ORTHO05D001163 2.2e-07 58.2 33 69.7
Gohir.A13G234500 Gossypium hirsutum HOM05D000027 ORTHO05D001163 2.2e-07 58.2 38 60.5
Nitab4.5_0007880g0090 Nicotiana tabacum HOM05D000027 ORTHO05D001163 2.2e-07 58.2 28 82.1
QL02p025774 Quercus lobata HOM05D000027 ORTHO05D001163 2.2e-07 58.2 45 53.3
PGSC0003DMG400030454 Solanum tuberosum HOM05D000027 ORTHO05D001163 2.2e-07 58.2 28 78.6
PGSC0003DMG400030455 Solanum tuberosum HOM05D000027 ORTHO05D001163 2.2e-07 58.2 28 78.6
Dinv12680 Davidia involucrata HOM05D000027 ORTHO05D001163 2.9e-07 57.8 40 60.0
Dinv12681 Davidia involucrata HOM05D000027 ORTHO05D001163 2.9e-07 57.8 40 60.0
Gohir.D13G240100 Gossypium hirsutum HOM05D000027 ORTHO05D001163 2.9e-07 57.8 38 57.9
Oeu031821.1 Olea europaea HOM05D000027 ORTHO05D001163 2.9e-07 57.8 33 63.6
Prupe.6G050100 Prunus persica HOM05D000027 ORTHO05D001163 2.9e-07 57.8 45 51.1
Sopen06g033680 Solanum pennellii HOM05D000027 ORTHO05D001163 2.9e-07 57.8 28 78.6
Sopen06g033690 Solanum pennellii HOM05D000027 ORTHO05D001163 2.9e-07 57.8 28 78.6
Cc01_g14770 Coffea canephora HOM05D000150 ORTHO05D001163 3.8e-07 57.4 43 51.2
Duzib168G0458 Durio zibethinus HOM05D000027 ORTHO05D001163 3.8e-07 57.4 28 82.1
ECA248G1181 Erigeron canadensis HOM05D000027 ORTHO05D001163 3.8e-07 57.4 33 69.7
HanXRQChr03g0092261 Helianthus annuus HOM05D000027 ORTHO05D001163 3.8e-07 57.4 46 54.3
MD11G1062000 Malus domestica HOM05D000027 ORTHO05D001163 3.8e-07 57.4 35 62.9
MD11G1062200 Malus domestica HOM05D000027 ORTHO05D001163 3.8e-07 57.4 35 62.9
Nn2g10989 Nelumbo nucifera HOM05D000027 ORTHO05D001163 3.8e-07 57.4 31 71.0
RcHm_v2.0_Chr5g0071471 Rosa chinensis HOM05D000027 ORTHO05D001163 3.8e-07 57.4 30 66.7
vmacro14617 Vaccinium macrocarpon HOM05D000027 ORTHO05D001163 3.8e-07 57.4 37 64.9
CSS0002066 Camellia sinensis var. sinensis HOM05D000027 ORTHO05D001163 5.0e-07 57.0 31 67.7
Dinv19193 Davidia involucrata HOM05D000027 ORTHO05D001163 5.0e-07 57.0 33 63.6
Gorai.013G271000 Gossypium raimondii HOM05D000027 ORTHO05D001163 5.0e-07 57.0 38 57.9
Eucgr.J01871 Eucalyptus grandis HOM05D000027 ORTHO05D001163 6.5e-07 56.6 28 75.0
Dinv19194 Davidia involucrata HOM05D000027 ORTHO05D001163 8.5e-07 56.2 33 63.6
Eucgr.J01880 Eucalyptus grandis HOM05D000027 ORTHO05D001163 8.5e-07 56.2 33 60.6
FvH4_3g39631 Fragaria vesca HOM05D000027 ORTHO05D001163 8.5e-07 56.2 30 63.3
FAN11G0438 Fragaria x ananassa HOM05D000027 ORTHO05D001163 8.5e-07 56.2 30 63.3
FAN16G1933 Fragaria x ananassa HOM05D000027 ORTHO05D001163 8.5e-07 56.2 30 63.3
FAN21G0597 Fragaria x ananassa HOM05D000027 ORTHO05D001163 8.5e-07 56.2 30 63.3
SalBow6G0273 Salvia bowleyana HOM05D000027 ORTHO05D001163 8.5e-07 56.2 27 70.4
SalBow6G2395 Salvia bowleyana HOM05D000027 ORTHO05D001163 8.5e-07 56.2 27 70.4
SalBow6G2764 Salvia bowleyana HOM05D000027 ORTHO05D001163 8.5e-07 56.2 32 65.6
SalBow6G6930 Salvia bowleyana HOM05D000027 ORTHO05D001163 8.5e-07 56.2 32 65.6
TAR623G0391 Trochodendron aralioides HOM05D000027 ORTHO05D001163 8.5e-07 56.2 41 51.2
Cpa.g.sc46.189 Carica papaya HOM05D000027 ORTHO05D001163 1.1e-06 55.8 33 60.6
Eucgr.J01874 Eucalyptus grandis HOM05D000027 ORTHO05D001163 1.1e-06 55.8 33 60.6
FvH4_3g39570 Fragaria vesca HOM05D000027 ORTHO05D001163 1.1e-06 55.8 26 76.9
FAN21G0949 Fragaria x ananassa HOM05D000027 ORTHO05D001163 1.1e-06 55.8 26 76.9
EL10Ac7g15908 Beta vulgaris HOM05D000027 ORTHO05D001163 1.5e-06 55.5 43 51.2
Cfa011764 Carpinus fangiana HOM05D000027 ORTHO05D001163 1.5e-06 55.5 26 76.9
Duzib168G0930 Durio zibethinus HOM05D000027 ORTHO05D001163 1.5e-06 55.5 28 71.4
FvH4_3g39620 Fragaria vesca HOM05D000027 ORTHO05D001163 1.5e-06 55.5 41 53.7
FAN25G3669 Fragaria x ananassa HOM05D000027 ORTHO05D001163 1.5e-06 55.5 41 53.7
Lj6g0027105 Lotus japonicus HOM05D000027 ORTHO05D001163 1.5e-06 55.5 26 73.1
MD11G1061800 Malus domestica HOM05D000027 ORTHO05D001163 1.5e-06 55.5 32 65.6
Prupe.6G049300 Prunus persica HOM05D000027 ORTHO05D001163 1.5e-06 55.5 31 67.7
RcHm_v2.0_Chr5g0071341 Rosa chinensis HOM05D000027 ORTHO05D001163 1.5e-06 55.5 26 76.9
Solyc06g082300.4 Solanum lycopersicum HOM05D000027 ORTHO05D001163 1.5e-06 55.5 28 75.0
Aqoxy1G01302 Aquilegia oxysepala HOM05D000027 ORTHO05D001163 1.9e-06 55.1 26 76.9
arahy.Tifrunner.gnm1.ann1.G24X58 Arachis hypogaea HOM05D000027 ORTHO05D001163 1.9e-06 55.1 38 55.3
arahy.Tifrunner.gnm1.ann1.L8F1YU Arachis hypogaea HOM05D000027 ORTHO05D001163 1.9e-06 55.1 38 55.3
Migut.D02489 Erythranthe guttata HOM05D000027 ORTHO05D001163 1.9e-06 55.1 28 67.9
Eucgr.B00409 Eucalyptus grandis HOM05D000027 ORTHO05D001163 1.9e-06 55.1 31 64.5
Eucgr.B00411 Eucalyptus grandis HOM05D000027 ORTHO05D001163 1.9e-06 55.1 31 64.5
FAN25G1576 Fragaria x ananassa HOM05D000027 ORTHO05D001163 1.9e-06 55.1 26 73.1
Lj2A1092T49 Lonicera japonica HOM05D000027 ORTHO05D001163 1.9e-06 55.1 25 80.0
QL01p026705 Quercus lobata HOM05D000027 ORTHO05D001163 1.9e-06 55.1 32 56.2
Rhsim01G0240500 Rhododendron simsii HOM05D000027 ORTHO05D001163 1.9e-06 55.1 26 76.9
CSS0031223 Camellia sinensis var. sinensis HOM05D000027 ORTHO05D001163 2.5e-06 54.7 32 59.4
Ciclev10028356m.g Citrus clementina HOM05D000027 ORTHO05D001163 2.5e-06 54.7 26 76.9
COL.COLO4_11135 Corchorus olitorius HOM05D000027 ORTHO05D001163 2.5e-06 54.7 38 55.3
MD11G1062600 Malus domestica HOM05D000027 ORTHO05D001163 2.5e-06 54.7 38 52.6
Prupe.6G049600 Prunus persica HOM05D000027 ORTHO05D001163 2.5e-06 54.7 26 73.1
QL01p026502 Quercus lobata HOM05D000027 ORTHO05D001163 2.5e-06 54.7 26 73.1
QL01p026651 Quercus lobata HOM05D000027 ORTHO05D001163 2.5e-06 54.7 30 63.3
TWI79G1498 Tripterygium wilfordii HOM05D000027 ORTHO05D001163 2.5e-06 54.7 38 57.9
TAR623G0176 Trochodendron aralioides HOM05D000027 ORTHO05D001163 2.5e-06 54.7 38 50.0
vmacro00349 Vaccinium macrocarpon HOM05D000150 ORTHO05D001163 2.5e-06 54.7 29 65.5
vmacro02766 Vaccinium macrocarpon HOM05D000027 ORTHO05D001163 2.5e-06 54.7 29 65.5
CANSAT54G1727 Cannabis sativa HOM05D000027 ORTHO05D001163 3.2e-06 54.3 34 61.8
AUR62001891 Chenopodium quinoa HOM05D000027 ORTHO05D001163 3.2e-06 54.3 28 71.4
AUR62009687 Chenopodium quinoa HOM05D000027 ORTHO05D001163 3.2e-06 54.3 28 71.4
Ca_14999_v3 Cicer arietinum L. HOM05D000027 ORTHO05D001163 3.2e-06 54.3 34 61.8
Ciclev10028375m.g Citrus clementina HOM05D000027 ORTHO05D001163 3.2e-06 54.3 26 69.2
Eucgr.B00404 Eucalyptus grandis HOM05D000027 ORTHO05D001163 3.2e-06 54.3 26 73.1
Eucgr.B00406 Eucalyptus grandis HOM05D000027 ORTHO05D001163 3.2e-06 54.3 26 73.1
Eucgr.B03993 Eucalyptus grandis HOM05D000027 ORTHO05D001163 3.2e-06 54.3 26 73.1
Eucgr.B03996 Eucalyptus grandis HOM05D000027 ORTHO05D001163 3.2e-06 54.3 26 73.1
FvH4_3g39580 Fragaria vesca HOM05D000027 ORTHO05D001163 3.2e-06 54.3 26 73.1
Gohir.D05G108800 Gossypium hirsutum HOM05D000027 ORTHO05D001163 3.2e-06 54.3 26 69.2
Gorai.009G113100 Gossypium raimondii HOM05D000027 ORTHO05D001163 3.2e-06 54.3 26 69.2
Phvul.008G256600 Phaseolus vulgaris HOM05D000027 ORTHO05D001163 3.2e-06 54.3 29 62.1
Phvul.008G256800 Phaseolus vulgaris HOM05D000027 ORTHO05D001163 3.2e-06 54.3 29 62.1
RcHm_v2.0_Chr5g0071441 Rosa chinensis HOM05D000027 ORTHO05D001163 3.2e-06 54.3 26 69.2
COL.COLO4_11137 Corchorus olitorius HOM05D000027 ORTHO05D001163 4.2e-06 53.9 37 51.4
Duzib168G0915 Durio zibethinus HOM05D000027 ORTHO05D001163 4.2e-06 53.9 29 72.4
FvH4_3g39591 Fragaria vesca HOM05D000027 ORTHO05D001163 4.2e-06 53.9 41 53.7
MBI13_g04189_MAGBIO Magnolia biondii HOM05D000027 ORTHO05D001163 4.2e-06 53.9 27 66.7
Nitab4.5_0009741g0010 Nicotiana tabacum HOM05D000027 ORTHO05D001163 4.2e-06 53.9 28 78.6
PSO765G0008 Papaver somniferum HOM05D000027 ORTHO05D001163 4.2e-06 53.9 31 61.3
Peaxi162Scf00390g00075 Petunia axillaris HOM05D000027 ORTHO05D001163 4.2e-06 53.9 28 78.6
PGR119G0598 Punica granatum HOM05D000027 ORTHO05D001163 4.2e-06 53.9 29 72.4
Rhsim01G0240300 Rhododendron simsii HOM05D000027 ORTHO05D001163 4.2e-06 53.9 26 73.1
vmacro14619 Vaccinium macrocarpon HOM05D000027 ORTHO05D001163 4.2e-06 53.9 26 73.1
arahy.Tifrunner.gnm1.ann1.W4418Q Arachis hypogaea HOM05D000027 ORTHO05D001163 5.5e-06 53.5 33 60.6
EL10Ac7g15909 Beta vulgaris HOM05D000027 ORTHO05D001163 5.5e-06 53.5 30 66.7
CiPaw.13G070900 Carya illinoinensis HOM05D000027 ORTHO05D001163 5.5e-06 53.5 30 66.7
COL.COLO4_11138 Corchorus olitorius HOM05D000027 ORTHO05D001163 5.5e-06 53.5 27 74.1
VMungo0647G1888 Vigna mungo HOM05D000027 ORTHO05D001163 5.5e-06 53.5 29 58.6
Actinidia23863 Actinidia chinensis HOM05D000027 ORTHO05D001163 7.2e-06 53.1 28 71.4
Haze_24399 Corylus avellana HOM05D000027 ORTHO05D001163 7.2e-06 53.1 25 80.0
Eucgr.J01875 Eucalyptus grandis HOM05D000027 ORTHO05D001163 7.2e-06 53.1 28 67.9
Glyma.14G198000 Glycine max HOM05D000027 ORTHO05D001163 7.2e-06 53.1 26 69.2
Gohir.A13G234400 Gossypium hirsutum HOM05D000027 ORTHO05D001163 7.2e-06 53.1 25 80.0
Gohir.A13G234600 Gossypium hirsutum HOM05D000027 ORTHO05D001163 7.2e-06 53.1 28 75.0
Lalb_Chr17g0345361 Lupinus albus HOM05D000027 ORTHO05D001163 7.2e-06 53.1 30 60.0
MD11G1062300 Malus domestica HOM05D000027 ORTHO05D001163 7.2e-06 53.1 25 72.0
Manes.12G131900 Manihot esculenta HOM05D000027 ORTHO05D001163 7.2e-06 53.1 26 69.2
Potri.009G077500 Populus trichocarpa HOM05D000027 ORTHO05D001163 7.2e-06 53.1 27 66.7
Sabra09G0059000 Salix brachista HOM05D000027 ORTHO05D001163 7.2e-06 53.1 30 66.7
Sabra16G0175500 Salix brachista HOM05D000027 ORTHO05D001163 7.2e-06 53.1 38 57.9
Thecc.09G356500 Theobroma cacao HOM05D000027 ORTHO05D001163 7.2e-06 53.1 25 80.0
VMungo0647G1690 Vigna mungo HOM05D000027 ORTHO05D001163 7.2e-06 53.1 26 69.2
arahy.Tifrunner.gnm1.ann1.GL9F8W Arachis hypogaea HOM05D000027 ORTHO05D001163 9.5e-06 52.8 34 55.9
CiPaw.13G070100 Carya illinoinensis HOM05D000027 ORTHO05D001163 9.5e-06 52.8 26 69.2
AUR62001882 Chenopodium quinoa HOM05D000027 ORTHO05D001163 9.5e-06 52.8 29 72.4
Ca_05644_v3 Cicer arietinum L. HOM05D000027 ORTHO05D001163 9.5e-06 52.8 33 54.5
FvH4_3g39630 Fragaria vesca HOM05D000027 ORTHO05D001163 9.5e-06 52.8 26 65.4
FAN11G2931 Fragaria x ananassa HOM05D000027 ORTHO05D001163 9.5e-06 52.8 26 65.4
MD11G1062500 Malus domestica HOM05D000027 ORTHO05D001163 9.5e-06 52.8 32 65.6
Phvul.008G257200 Phaseolus vulgaris HOM05D000027 ORTHO05D001163 9.5e-06 52.8 26 69.2
Psat2g053960 Pisum sativum HOM05D000027 ORTHO05D001163 9.5e-06 52.8 29 65.5
TWI75G0322 Tripterygium wilfordii HOM05D000027 ORTHO05D001163 9.5e-06 52.8 26 69.2
TAR623G1323 Trochodendron aralioides HOM05D000027 ORTHO05D001163 9.5e-06 52.8 40 52.5


User provided reference genes

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