Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold36G14563 Striga asiatica HOM05D006057 ORTHO05D007224 6.6e-64 247.3 131 100.0
SGA_v2.0_scaffold38G15005 Striga asiatica HOM05D006057 ORTHO05D007224 6.4e-51 204.1 130 83.1
Migut.L01023 Erythranthe guttata HOM05D006057 ORTHO05D007224 6.9e-37 157.5 133 66.9
Oeu048368.1 Olea europaea HOM05D006057 ORTHO05D007224 3.2e-34 148.7 132 63.6
Migut.L00999 Erythranthe guttata HOM05D006057 ORTHO05D007224 5.4e-34 147.9 111 74.8
Migut.L00831 Erythranthe guttata HOM05D006057 ORTHO05D007224 1.6e-33 146.4 117 70.9
CSS0031729 Camellia sinensis var. sinensis HOM05D006057 ORTHO05D007224 2.1e-33 146.0 130 60.8
Peaxi162Scf00314g00430 Petunia axillaris HOM05D006057 ORTHO05D007224 6.0e-33 144.4 118 67.8
Rhsim01G0001300 Rhododendron simsii HOM05D006057 ORTHO05D007224 3.0e-32 142.1 131 59.5
Nitab4.5_0002450g0080 Nicotiana tabacum HOM05D006057 ORTHO05D007224 3.9e-32 141.7 118 66.9
PGSC0003DMG400014183 Solanum tuberosum HOM05D006057 ORTHO05D007224 1.1e-31 140.2 128 63.3
vmacro02351 Vaccinium macrocarpon HOM05D006057 ORTHO05D007224 2.5e-31 139.0 131 58.0
Sopen03g037330 Solanum pennellii HOM05D006057 ORTHO05D007224 3.3e-31 138.7 128 62.5
CAN.G843.33 Capsicum annuum HOM05D006057 ORTHO05D007224 5.6e-31 137.9 118 64.4
Nitab4.5_0002046g0150 Nicotiana tabacum HOM05D006057 ORTHO05D007224 5.6e-31 137.9 118 65.3
Solyc03g118440.3 Solanum lycopersicum HOM05D006057 ORTHO05D007224 9.6e-31 137.1 128 61.7
unitig_26.g10007 Utricularia gibba HOM05D006057 ORTHO05D007224 2.1e-30 136.0 128 54.7
Nitab4.5_0001841g0090 Nicotiana tabacum HOM05D006057 ORTHO05D007224 2.4e-29 132.5 127 63.0
Nitab4.5_0010904g0040 Nicotiana tabacum HOM05D006057 ORTHO05D007224 4.0e-29 131.7 127 61.4
Hma1.2p1_0350F.1_g132530 Hydrangea macrophylla HOM05D006057 ORTHO05D007224 5.3e-29 131.3 131 58.0
QL09p037524 Quercus lobata HOM05D006057 ORTHO05D007224 9.0e-29 130.6 133 54.9
Manes.05G006500 Manihot esculenta HOM05D006057 ORTHO05D007224 4.5e-28 128.3 130 54.6
DCAR_012292 Daucus carota HOM05D006057 ORTHO05D007224 7.6e-28 127.5 128 53.9
DCAR_012291 Daucus carota HOM05D006057 ORTHO05D007224 9.9e-28 127.1 128 53.9
Lj1C4G2 Lonicera japonica HOM05D006057 ORTHO05D007224 9.9e-28 127.1 118 61.0
Potri.014G110300 Populus trichocarpa HOM05D006057 ORTHO05D007224 9.9e-28 127.1 121 56.2
TAR633G2394 Trochodendron aralioides HOM05D006057 ORTHO05D007224 1.3e-27 126.7 136 52.2
Lju2566A1T37 Lonicera japonica HOM05D006057 ORTHO05D007224 2.2e-27 125.9 118 60.2
PGR042G0310 Punica granatum HOM05D006057 ORTHO05D007224 4.9e-27 124.8 125 54.4
Gorai.008G133300 Gossypium raimondii HOM05D006057 ORTHO05D007224 6.4e-27 124.4 132 53.0
Gohir.D12G122500 Gossypium hirsutum HOM05D006057 ORTHO05D007224 8.4e-27 124.0 131 53.4
Medtr4g118050 Medicago truncatula HOM05D006057 ORTHO05D007224 2.4e-26 122.5 122 54.9
TPR.G3097 Trifolium pratense HOM05D006057 ORTHO05D007224 2.4e-26 122.5 125 53.6
CANSAT25G1403 Cannabis sativa HOM05D006057 ORTHO05D007224 3.2e-26 122.1 118 59.3
Lj5g0024678 Lotus japonicus HOM05D006057 ORTHO05D007224 5.5e-26 121.3 127 55.9
Atru.chr5.830 Acer truncatum HOM05D006057 ORTHO05D007224 9.3e-26 120.6 132 52.3
Actinidia21332 Actinidia chinensis HOM05D006057 ORTHO05D007224 9.3e-26 120.6 133 54.1
Ca_10224_v3 Cicer arietinum L. HOM05D006057 ORTHO05D007224 9.3e-26 120.6 129 53.5
Duzib138G1502 Durio zibethinus HOM05D006057 ORTHO05D007224 9.3e-26 120.6 133 51.1
ECA238G2998 Erigeron canadensis HOM05D006057 ORTHO05D007224 9.3e-26 120.6 130 52.3
COL.COLO4_23092 Corchorus olitorius HOM05D006057 ORTHO05D007224 1.2e-25 120.2 130 51.5
Cpa.g.sc57.50 Carica papaya HOM05D006057 ORTHO05D007224 2.1e-25 119.4 133 51.9
Eucgr.A00985 Eucalyptus grandis HOM05D006057 ORTHO05D007224 2.1e-25 119.4 130 50.0
Medtr1g085440 Medicago truncatula HOM05D006057 ORTHO05D007224 2.1e-25 119.4 128 50.0
Medtr1g085355 Medicago truncatula HOM05D006057 ORTHO05D007224 3.5e-25 118.6 122 54.1
RcHm_v2.0_Chr2g0148291 Rosa chinensis HOM05D006057 ORTHO05D007224 4.6e-25 118.2 129 50.4
BraA10t45317Z Brassica rapa HOM05D006057 ORTHO05D007224 6.0e-25 117.9 133 50.4
Haze_05170 Corylus avellana HOM05D006057 ORTHO05D007224 6.0e-25 117.9 87 65.5
Glyma.10G140400 Glycine max HOM05D006057 ORTHO05D007224 6.0e-25 117.9 127 55.1
MD17G1156700 Malus domestica HOM05D006057 ORTHO05D007224 6.0e-25 117.9 128 50.0
Prupe.3G028700 Prunus persica HOM05D006057 ORTHO05D007224 6.0e-25 117.9 128 51.6
GSVIVG01028268001 Vitis vinifera HOM05D006057 ORTHO05D007224 6.0e-25 117.9 105 60.0
AL6G12340 Arabidopsis lyrata HOM05D006057 ORTHO05D007224 1.0e-24 117.1 135 48.9
arahy.Tifrunner.gnm1.ann1.78VVNS Arachis hypogaea HOM05D006057 ORTHO05D007224 1.3e-24 116.7 126 53.2
BcaC06g32027 Brassica carinata HOM05D006057 ORTHO05D007224 1.3e-24 116.7 133 49.6
BcaNung04734 Brassica carinata HOM05D006057 ORTHO05D007224 1.3e-24 116.7 133 49.6
BolC9t60103H Brassica oleracea HOM05D006057 ORTHO05D007224 1.3e-24 116.7 133 49.6
Lalb_Chr02g0147311 Lupinus albus HOM05D006057 ORTHO05D007224 1.3e-24 116.7 126 51.6
Nn4g25242 Nelumbo nucifera HOM05D006057 ORTHO05D007224 2.3e-24 115.9 124 53.2
AT5G03050 Arabidopsis thaliana HOM05D006057 ORTHO05D007224 3.0e-24 115.5 129 49.6
CARHR210270 Cardamine hirsuta HOM05D006057 ORTHO05D007224 3.0e-24 115.5 129 51.2
Cc08_g05070 Coffea canephora HOM05D006057 ORTHO05D007224 3.0e-24 115.5 113 56.6
Gohir.A12G118700 Gossypium hirsutum HOM05D006057 ORTHO05D007224 3.0e-24 115.5 131 50.4
arahy.Tifrunner.gnm1.ann1.TF3SPP Arachis hypogaea HOM05D006057 ORTHO05D007224 3.9e-24 115.2 117 55.6
C09p73700 Brassica napus HOM05D006057 ORTHO05D007224 3.9e-24 115.2 133 49.6
Carub.0006s0184 Capsella rubella HOM05D006057 ORTHO05D007224 3.9e-24 115.2 129 50.4
Ciclev10023548m.g Citrus clementina HOM05D006057 ORTHO05D007224 3.9e-24 115.2 98 62.2
BcaNung05509 Brassica carinata HOM05D006057 ORTHO05D007224 5.1e-24 114.8 108 55.6
BolC9t60100H Brassica oleracea HOM05D006057 ORTHO05D007224 5.1e-24 114.8 108 56.5
Psat6g157560 Pisum sativum HOM05D006057 ORTHO05D007224 6.7e-24 114.4 128 46.1
ClCG10G013240 Citrullus lanatus HOM05D006057 ORTHO05D007224 1.9e-23 112.8 133 48.1
HanXRQChr07g0194641 Helianthus annuus HOM05D006057 ORTHO05D007224 1.9e-23 112.8 132 50.8
MBI18_g03875_MAGBIO Magnolia biondii HOM05D006057 ORTHO05D007224 1.9e-23 112.8 129 48.1
Sp6g39640 Schrenkiella parvula HOM05D006057 ORTHO05D007224 1.9e-23 112.8 134 50.7
TWI14G0531 Tripterygium wilfordii HOM05D006057 ORTHO05D007224 2.5e-23 112.5 130 50.0
FvH4_6g36280 Fragaria vesca HOM05D006057 ORTHO05D007224 3.3e-23 112.1 122 52.5
Aa31LG1G21980 Aethionema arabicum HOM05D006057 ORTHO05D007224 4.3e-23 111.7 130 50.0
Sed0018142 Sechium edule HOM05D006057 ORTHO05D007224 4.3e-23 111.7 131 48.1
BcaC06g32028 Brassica carinata HOM05D006057 ORTHO05D007224 7.4e-23 110.9 128 47.7
Thhalv10015298m.g Eutrema salsugineum HOM05D006057 ORTHO05D007224 7.4e-23 110.9 110 55.5
TWI59G0504 Tripterygium wilfordii HOM05D006057 ORTHO05D007224 9.6e-23 110.5 117 52.1
BcaB05g21854 Brassica carinata HOM05D006057 ORTHO05D007224 1.3e-22 110.2 128 49.2
Phvul.007G207500 Phaseolus vulgaris HOM05D006057 ORTHO05D007224 1.6e-22 109.8 130 50.0
BcaC03g13034 Brassica carinata HOM05D006057 ORTHO05D007224 3.7e-22 108.6 86 60.5
BcaC03g13036 Brassica carinata HOM05D006057 ORTHO05D007224 3.7e-22 108.6 86 60.5
C02p00760 Brassica napus HOM05D006057 ORTHO05D007224 3.7e-22 108.6 86 60.5
BolC2t06074H Brassica oleracea HOM05D006057 ORTHO05D007224 3.7e-22 108.6 86 60.5
CDE01G0754 Ceratophyllum demersum HOM05D006057 ORTHO05D007224 3.7e-22 108.6 130 46.2
VMungo0720G1137 Vigna mungo HOM05D006057 ORTHO05D007224 3.7e-22 108.6 109 53.2
BraA02t04741Z Brassica rapa HOM05D006057 ORTHO05D007224 4.8e-22 108.2 134 48.5
Gohir.A07G132650 Gossypium hirsutum HOM05D006057 ORTHO05D007224 4.8e-22 108.2 84 61.9
Sabra02G0131200 Salix brachista HOM05D006057 ORTHO05D007224 6.2e-22 107.8 107 52.3
CsaV3_3G043390 Cucumis sativus L. HOM05D006057 ORTHO05D007224 1.1e-21 107.1 128 49.2
MELO3C026900.2 Cucumis melo HOM05D006057 ORTHO05D007224 1.4e-21 106.7 133 46.6
Sc09g0000780 Simmondsia chinensis HOM05D006057 ORTHO05D007224 1.4e-21 106.7 89 60.7
Lsat_1_v5_gn_2_108401 Lactuca sativa HOM05D006057 ORTHO05D007224 5.3e-21 104.8 123 50.4
SHI19776 Sapria himalayana HOM05D006057 ORTHO05D007224 1.2e-20 103.6 104 51.9
Aqoxy5G02874 Aquilegia oxysepala HOM05D006057 ORTHO05D007224 2.0e-20 102.8 138 47.1
EL10Ac4g10232 Beta vulgaris HOM05D006057 ORTHO05D007224 5.8e-20 101.3 113 49.6
Glyma.20G089200 Glycine max HOM05D006057 ORTHO05D007224 1.0e-19 100.5 136 48.5
AUR62000136 Chenopodium quinoa HOM05D006057 ORTHO05D007224 2.2e-19 99.4 103 49.5
Ah.04g162100 Amaranthus hybridus HOM05D006057 ORTHO05D007224 4.9e-19 98.2 99 51.5
PSO170G4276 Papaver somniferum HOM05D006057 ORTHO05D007224 1.1e-18 97.1 122 50.8
Hund22023 Selenicereus undatus HOM05D006057 ORTHO05D007224 2.5e-18 95.9 87 54.0
PSO339G1810 Papaver somniferum HOM05D006057 ORTHO05D007224 3.2e-18 95.5 116 47.4
HPP92_026861 Vanilla planifolia HOM05D006057 ORTHO05D007224 9.3e-18 94.0 125 46.4
AUR62019316 Chenopodium quinoa HOM05D006057 ORTHO05D007224 1.2e-17 93.6 89 50.6
PSO081G0045 Papaver somniferum HOM05D006057 ORTHO05D007224 1.0e-16 90.5 116 45.7
Ah.06g194050 Amaranthus hybridus HOM05D006057 ORTHO05D007224 2.3e-16 89.4 98 49.0
SEGI_31615 Sequoiadendron giganteum HOM05D006057 ORTHO05D007224 2.3e-16 89.4 123 40.7
CDE12G0816 Ceratophyllum demersum HOM05D006057 ORTHO05D007224 3.9e-16 88.6 69 63.8
Potri.002G184600 Populus trichocarpa HOM05D006057 ORTHO05D007224 3.3e-15 85.5 102 52.9
Gorai.001G149000 Gossypium raimondii HOM05D006057 ORTHO05D007224 7.4e-15 84.3 64 65.6
Dinv05504 Davidia involucrata HOM05D006057 ORTHO05D007224 1.6e-14 83.2 89 55.1
ATR0019G040 Amborella trichopoda HOM05D006057 ORTHO05D007224 3.7e-14 82.0 105 46.7
Gohir.D07G136950 Gossypium hirsutum HOM05D006057 ORTHO05D007224 8.2e-14 80.9 64 65.6
BcaNung05508 Brassica carinata HOM05D006057 ORTHO05D007224 1.1e-13 80.5 110 41.8
CiPaw.07G127700 Carya illinoinensis HOM05D006057 ORTHO05D007224 2.4e-13 79.3 87 50.6
Os03g0108700 Oryza sativa ssp. japonica HOM05D006057 ORTHO05D007224 6.9e-13 77.8 73 52.1
CBR_g39249 Chara braunii HOM05D006057 ORTHO05D007224 2.6e-12 75.9 98 41.8
Zm00001eb000680 Zea mays HOM05D006057 ORTHO05D007224 2.6e-12 75.9 102 43.1
SMO361G0765 Selaginella moellendorffii HOM05D006057 ORTHO05D007224 4.5e-12 75.1 86 44.2
TPR.G3076 Trifolium pratense HOM05D006057 ORTHO05D007224 1.3e-08 63.5 83 44.6
Pp3c25_8550 Physcomitrium patens HOM05D006057 ORTHO05D007224 9.7e-07 57.4 111 32.4
Mapoly0076s0084 Marchantia polymorpha HOM05D006057 ORTHO05D007224 3.7e-06 55.5 108 29.6


User provided reference genes

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