Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold35G14004 Striga asiatica HOM05D007532 ORTHO05D009483 1.9e-117 426.0 245 100.0
SalBow5G5402 Salvia bowleyana HOM05D007532 ORTHO05D009483 2.6e-29 133.3 157 51.6
Migut.L01834 Erythranthe guttata HOM05D007532 ORTHO05D009483 7.1e-27 125.2 161 48.4
Oeu055526.1 Olea europaea HOM05D007532 ORTHO05D009483 3.5e-26 122.9 164 45.7
MSTRG.10404 Avicennia marina HOM05D007532 ORTHO05D009483 4.6e-26 122.5 217 39.2
Oeu035652.1 Olea europaea HOM05D007532 ORTHO05D009483 6.2e-23 112.1 230 37.0
Oeu045039.1 Olea europaea HOM05D007532 ORTHO05D009483 4.4e-21 105.9 217 37.3
TAR623G0884 Trochodendron aralioides HOM05D007532 ORTHO05D009483 1.6e-15 87.4 143 42.7
PGR004G2296 Punica granatum HOM05D007532 ORTHO05D009483 6.2e-15 85.5 178 35.4
GSVIVG01033946001 Vitis vinifera HOM05D007532 ORTHO05D009483 6.2e-15 85.5 153 40.5
Dinv31750 Davidia involucrata HOM05D010118 ORTHO05D009483 1.4e-14 84.3 209 34.4
DCAR_020715 Daucus carota HOM05D007532 ORTHO05D009483 3.1e-14 83.2 153 39.9
Actinidia04004 Actinidia chinensis HOM05D007532 ORTHO05D009483 4.0e-14 82.8 179 36.9
Actinidia32050 Actinidia chinensis HOM05D007532 ORTHO05D009483 4.0e-14 82.8 159 35.8
COL.COLO4_29593 Corchorus olitorius HOM05D007532 ORTHO05D009483 9.0e-14 81.6 170 36.5
Nitab4.5_0000020g0210 Nicotiana tabacum HOM05D007532 ORTHO05D009483 9.0e-14 81.6 181 37.6
Thecc.05G102000 Theobroma cacao HOM05D007532 ORTHO05D009483 2.0e-13 80.5 164 38.4
Manes.09G046800 Manihot esculenta HOM05D007532 ORTHO05D009483 7.6e-13 78.6 151 37.1
Nitab4.5_0006654g0010 Nicotiana tabacum HOM05D007532 ORTHO05D009483 9.9e-13 78.2 181 37.0
Duzib093G1477 Durio zibethinus HOM05D007532 ORTHO05D009483 2.2e-12 77.0 163 37.4
TWI74G0748 Tripterygium wilfordii HOM05D007532 ORTHO05D009483 8.4e-12 75.1 146 37.0
CiPaw.10G016200 Carya illinoinensis HOM05D007532 ORTHO05D009483 1.4e-11 74.3 149 36.9
Lj1C1049T4 Lonicera japonica HOM05D007532 ORTHO05D009483 9.3e-11 71.6 141 40.4
Sabra08G0039200 Salix brachista HOM05D002150 ORTHO05D002191 9.3e-11 71.6 166 28.3
Haze_19695 Corylus avellana HOM05D007532 ORTHO05D009483 1.2e-10 71.2 155 36.8
Cfa016678 Carpinus fangiana HOM05D007532 ORTHO05D009483 2.7e-10 70.1 155 36.1
Atru.chr8.1383 Acer truncatum HOM05D007532 ORTHO05D009483 4.6e-10 69.3 145 37.9
Sabra06G0157400 Salix brachista HOM05D007532 ORTHO05D009483 4.6e-10 69.3 189 31.7
Phvul.007G269000 Phaseolus vulgaris HOM05D007532 ORTHO05D009483 6.0e-10 68.9 162 34.6
Nn5g26936 Nelumbo nucifera HOM05D002150 ORTHO05D002191 7.8e-10 68.6 128 32.8
TWI77G0050 Tripterygium wilfordii HOM05D007532 ORTHO05D009483 7.8e-10 68.6 138 37.0
Lj5g0000288 Lotus japonicus HOM05D007532 ORTHO05D009483 1.0e-09 68.2 138 36.2
Potri.008G054400 Populus trichocarpa HOM05D002150 ORTHO05D002191 1.0e-09 68.2 166 27.7
Cc02_g08010 Coffea canephora HOM05D002150 ORTHO05D002191 1.3e-09 67.8 123 35.8
Rhsim03G0066200 Rhododendron simsii HOM05D007532 ORTHO05D009483 1.3e-09 67.8 139 35.3
Gohir.D04G094900 Gossypium hirsutum HOM05D007532 ORTHO05D009483 2.3e-09 67.0 150 35.3
Gorai.009G397600 Gossypium raimondii HOM05D007532 ORTHO05D009483 2.3e-09 67.0 150 35.3
Potri.010G206100 Populus trichocarpa HOM05D002150 ORTHO05D002191 3.0e-09 66.6 166 27.7
Eucgr.A02598 Eucalyptus grandis HOM05D007532 ORTHO05D009483 3.9e-09 66.2 113 41.6
Cpa.g.sc104.49 Carica papaya HOM05D007532 ORTHO05D009483 6.6e-09 65.5 200 31.0
Lsat_1_v5_gn_2_55700 Lactuca sativa HOM05D007532 ORTHO05D009483 6.6e-09 65.5 159 33.3
MBI05_g06551_MAGBIO Magnolia biondii HOM05D002150 ORTHO05D002191 8.7e-09 65.1 176 30.7
Medtr1g057220 Medicago truncatula HOM05D007532 ORTHO05D009483 1.1e-08 64.7 147 32.0
Sabra10G0159300 Salix brachista HOM05D002150 ORTHO05D002191 1.5e-08 64.3 162 29.0
FAN01G1088 Fragaria x ananassa HOM05D002150 ORTHO05D002191 1.9e-08 63.9 159 28.9
FAN01G1666 Fragaria x ananassa HOM05D002150 ORTHO05D002191 1.9e-08 63.9 159 28.9
FAN06G3415 Fragaria x ananassa HOM05D002150 ORTHO05D002191 1.9e-08 63.9 159 28.9
MBI14_g20632_MAGBIO Magnolia biondii HOM05D002150 ORTHO05D002191 1.9e-08 63.9 122 33.6
Manes.07G114700 Manihot esculenta HOM05D002150 ORTHO05D002191 1.9e-08 63.9 160 28.1
Gohir.D09G131700 Gossypium hirsutum HOM05D007532 ORTHO05D009483 2.5e-08 63.5 170 32.9
TAR369G0649 Trochodendron aralioides HOM05D002150 ORTHO05D002191 2.5e-08 63.5 163 26.4
FvH4_7g22100 Fragaria vesca HOM05D002150 ORTHO05D002191 3.3e-08 63.2 147 29.3
Potri.016G071700 Populus trichocarpa HOM05D007532 ORTHO05D009483 3.3e-08 63.2 181 30.9
Gorai.006G150300 Gossypium raimondii HOM05D007532 ORTHO05D009483 4.3e-08 62.8 170 32.4
FAN03G0145 Fragaria x ananassa HOM05D002150 ORTHO05D002191 5.6e-08 62.4 147 29.3
Gohir.A09G135100 Gossypium hirsutum HOM05D007532 ORTHO05D009483 5.6e-08 62.4 170 32.9
Ciclev10032119m.g Citrus clementina HOM05D002150 ORTHO05D002191 9.6e-08 61.6 111 33.3
FAN10G3914 Fragaria x ananassa HOM05D002150 ORTHO05D002191 9.6e-08 61.6 130 29.2
QL01p032435 Quercus lobata HOM05D002150 ORTHO05D002191 9.6e-08 61.6 160 30.0
ATR0559G086 Amborella trichopoda HOM05D002150 ORTHO05D002191 1.3e-07 61.2 181 27.6
Aqoxy4G02951 Aquilegia oxysepala HOM05D002150 ORTHO05D002191 1.3e-07 61.2 126 31.0
TPR.G31864 Trifolium pratense HOM05D007532 ORTHO05D009483 1.3e-07 61.2 112 33.9
GSVIVG01016563001 Vitis vinifera HOM05D002150 ORTHO05D002191 1.6e-07 60.8 151 30.5
Cpa.g.sc1.395 Carica papaya HOM05D002150 ORTHO05D002191 2.1e-07 60.5 115 31.3
Manes.08G032400 Manihot esculenta HOM05D007532 ORTHO05D009483 2.1e-07 60.5 166 33.1
Gohir.A04G060800 Gossypium hirsutum HOM05D007532 ORTHO05D009483 3.6e-07 59.7 149 33.6
MSTRG.18585 Avicennia marina HOM05D002150 ORTHO05D002191 4.8e-07 59.3 161 33.5
Duzib128G1760 Durio zibethinus HOM05D002150 ORTHO05D002191 4.8e-07 59.3 113 32.7
BcaC07g39613 Brassica carinata HOM05D007532 ORTHO05D009483 6.2e-07 58.9 142 35.2
BolC8t50392H Brassica oleracea HOM05D007532 ORTHO05D009483 6.2e-07 58.9 142 35.2
CSS0006598 Camellia sinensis var. sinensis HOM05D002150 ORTHO05D002191 6.2e-07 58.9 157 33.8
CSS0034701 Camellia sinensis var. sinensis HOM05D002150 ORTHO05D002191 6.2e-07 58.9 157 33.8
ECA238G0408 Erigeron canadensis HOM05D000002 ORTHO05D000001 6.2e-07 58.9 140 29.3
Manes.11G131700 Manihot esculenta HOM05D002150 ORTHO05D002191 6.2e-07 58.9 106 35.8
Potri.001G238300 Populus trichocarpa HOM05D002150 ORTHO05D002191 6.2e-07 58.9 103 35.9
Prupe.2G233200 Prunus persica HOM05D002150 ORTHO05D002191 6.2e-07 58.9 112 33.0
TAR636G0554 Trochodendron aralioides HOM05D002150 ORTHO05D002191 6.2e-07 58.9 117 34.2
Rhsim09G0165300 Rhododendron simsii HOM05D002150 ORTHO05D002191 8.1e-07 58.5 153 32.0
TWI15G1205 Tripterygium wilfordii HOM05D002150 ORTHO05D002191 8.1e-07 58.5 168 27.4
CSS0001235 Camellia sinensis var. sinensis HOM05D002150 ORTHO05D002191 1.1e-06 58.2 153 33.3
CDE02G0275 Ceratophyllum demersum HOM05D002150 ORTHO05D002191 1.1e-06 58.2 105 35.2
DCAR_027636 Daucus carota HOM05D002150 ORTHO05D002191 1.1e-06 58.2 120 32.5
Duzib114G0657 Durio zibethinus HOM05D002150 ORTHO05D002191 1.1e-06 58.2 111 33.3
Duzib170G0504 Durio zibethinus HOM05D002150 ORTHO05D002191 1.1e-06 58.2 126 31.0
Hma1.2p1_1263F.1_g271270 Hydrangea macrophylla HOM05D002150 ORTHO05D002191 1.1e-06 58.2 118 34.7
Potri.006G204400 Populus trichocarpa HOM05D007532 ORTHO05D009483 1.1e-06 58.2 189 28.6
QL08p059179 Quercus lobata HOM05D002150 ORTHO05D002191 1.1e-06 58.2 141 31.9
Sabra09G0020400 Salix brachista HOM05D002150 ORTHO05D002191 1.1e-06 58.2 170 28.8
TWI38G0694 Tripterygium wilfordii HOM05D002150 ORTHO05D002191 1.1e-06 58.2 110 33.6
ATR0681G051 Amborella trichopoda HOM05D002150 ORTHO05D002191 1.4e-06 57.8 113 31.9
C08p27760 Brassica napus HOM05D007532 ORTHO05D009483 1.4e-06 57.8 142 35.2
Eucgr.G02923 Eucalyptus grandis HOM05D002150 ORTHO05D002191 1.4e-06 57.8 108 35.2
QL07p037073 Quercus lobata HOM05D007532 ORTHO05D009483 1.4e-06 57.8 106 36.8
Solyc05g054530.1 Solanum lycopersicum HOM05D002150 ORTHO05D002191 1.4e-06 57.8 134 33.6
Sopen05g033010 Solanum pennellii HOM05D002150 ORTHO05D002191 1.4e-06 57.8 134 33.6
CAN.G1013.11 Capsicum annuum HOM05D002150 ORTHO05D002191 1.8e-06 57.4 132 36.4
Haze_24076 Corylus avellana HOM05D002150 ORTHO05D002191 1.8e-06 57.4 170 27.1
MELO3C021655.2 Cucumis melo HOM05D002150 ORTHO05D002191 1.8e-06 57.4 121 31.4
Dinv18505 Davidia involucrata HOM05D002150 ORTHO05D002191 1.8e-06 57.4 158 29.7
Lsat_1_v5_gn_2_119741 Lactuca sativa HOM05D002150 ORTHO05D002191 1.8e-06 57.4 153 29.4
Eucgr.J02060 Eucalyptus grandis HOM05D002150 ORTHO05D002191 2.4e-06 57.0 99 38.4
RcHm_v2.0_Chr1g0366491 Rosa chinensis HOM05D002150 ORTHO05D002191 2.4e-06 57.0 147 27.9
CiPaw.02G183100 Carya illinoinensis HOM05D002150 ORTHO05D002191 3.1e-06 56.6 132 30.3
Cc01_g12700 Coffea canephora HOM05D002150 ORTHO05D002191 3.1e-06 56.6 102 34.3
FAN06G2166 Fragaria x ananassa HOM05D002150 ORTHO05D002191 3.1e-06 56.6 147 28.6
CiPaw.01G285100 Carya illinoinensis HOM05D002150 ORTHO05D002191 4.0e-06 56.2 103 34.0
ClCG09G019970 Citrullus lanatus HOM05D002150 ORTHO05D002191 4.0e-06 56.2 121 31.4
CsaV3_5G026480 Cucumis sativus L. HOM05D002150 ORTHO05D002191 4.0e-06 56.2 121 31.4
Duzib128G1100 Durio zibethinus HOM05D007532 ORTHO05D009483 4.0e-06 56.2 178 33.1
Nn6g34736 Nelumbo nucifera HOM05D007532 ORTHO05D009483 4.0e-06 56.2 140 35.0
Thecc.10G044300 Theobroma cacao HOM05D002150 ORTHO05D002191 4.0e-06 56.2 107 31.8
Glyma.10G079300 Glycine max HOM05D007532 ORTHO05D009483 5.3e-06 55.8 92 44.6
Lalb_Chr02g0154541 Lupinus albus HOM05D007532 ORTHO05D009483 5.3e-06 55.8 109 34.9
A09p45610 Brassica napus HOM05D007532 ORTHO05D009483 6.9e-06 55.5 147 32.7
BraA09t40022Z Brassica rapa HOM05D007532 ORTHO05D009483 6.9e-06 55.5 147 32.7
DCAR_005317 Daucus carota HOM05D002150 ORTHO05D002191 6.9e-06 55.5 97 37.1
PGR142G1450 Punica granatum HOM05D002150 ORTHO05D002191 6.9e-06 55.5 105 33.3
Rhsim01G0226700 Rhododendron simsii HOM05D002150 ORTHO05D002191 6.9e-06 55.5 98 33.7
SalBow3G3132 Salvia bowleyana HOM05D002150 ORTHO05D002191 6.9e-06 55.5 77 41.6
AL5G33190 Arabidopsis lyrata HOM05D007532 ORTHO05D009483 9.0e-06 55.1 155 31.0
Ca_11714_v3 Cicer arietinum L. HOM05D007532 ORTHO05D009483 9.0e-06 55.1 165 28.5
Duzib106G1076 Durio zibethinus HOM05D007532 ORTHO05D009483 9.0e-06 55.1 173 32.4
Peaxi162Scf00015g00142 Petunia axillaris HOM05D002150 ORTHO05D002191 9.0e-06 55.1 97 39.2
Zm00001eb283160 Zea mays HOM05D002150 ORTHO05D002191 9.0e-06 55.1 76 38.2


User provided reference genes

Program Settings