Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold34G13768 Striga asiatica HOM05D006105 ORTHO05D006345 2.4e-196 688.7 360 100.0
SGA_v2.0_scaffold73G24208 Striga asiatica HOM05D006105 ORTHO05D006345 1.6e-115 420.2 428 65.0
MSTRG.14950 Avicennia marina HOM05D006105 ORTHO05D006345 1.3e-61 241.1 439 42.8
MSTRG.14216 Avicennia marina HOM05D006105 ORTHO05D006345 5.1e-42 176.0 461 38.2
SalBow8G2605 Salvia bowleyana HOM05D006105 ORTHO05D006345 1.2e-38 164.9 391 37.6
Hma1.2p1_0688F.1_g203660 Hydrangea macrophylla HOM05D006105 ORTHO05D006345 1.8e-34 151.0 389 37.0
Haze_09360 Corylus avellana HOM05D006105 ORTHO05D006345 2.5e-33 147.1 389 35.2
CSS0022090 Camellia sinensis var. sinensis HOM05D006105 ORTHO05D006345 3.1e-31 140.2 443 37.0
Oeu059277.1 Olea europaea HOM05D006105 ORTHO05D006345 3.1e-31 140.2 381 37.0
Hma1.2p1_0416F.1_g148610 Hydrangea macrophylla HOM05D006105 ORTHO05D006345 5.3e-31 139.4 381 34.1
Oeu005394.1 Olea europaea HOM05D006105 ORTHO05D006345 1.2e-30 138.3 401 33.9
Actinidia35226 Actinidia chinensis HOM05D006105 ORTHO05D006345 2.0e-30 137.5 446 35.2
Dinv14962 Davidia involucrata HOM05D006105 ORTHO05D006345 2.0e-30 137.5 404 32.9
Actinidia18787 Actinidia chinensis HOM05D006105 ORTHO05D006345 2.6e-30 137.1 413 34.6
Migut.M00751 Erythranthe guttata HOM05D006105 ORTHO05D006345 1.0e-29 135.2 349 35.2
CSS0026032 Camellia sinensis var. sinensis HOM05D006105 ORTHO05D006345 5.0e-29 132.9 398 34.7
HanXRQChr10g0304731 Helianthus annuus HOM05D006105 ORTHO05D006345 3.2e-28 130.2 399 32.1
Ciclev10010617m.g Citrus clementina HOM05D006105 ORTHO05D006345 4.2e-28 129.8 392 33.2
SalBow7G2198 Salvia bowleyana HOM05D006105 ORTHO05D006345 9.4e-28 128.6 407 35.9
SalBow7G3373 Salvia bowleyana HOM05D006105 ORTHO05D006345 9.4e-28 128.6 407 35.6
ECA234G3938 Erigeron canadensis HOM05D006105 ORTHO05D006345 2.1e-27 127.5 439 33.7
QL08p027367 Quercus lobata HOM05D006105 ORTHO05D006345 3.9e-26 123.2 394 32.5
Cfa019604 Carpinus fangiana HOM05D006105 ORTHO05D006345 6.7e-26 122.5 384 32.3
Rhsim06G0204700 Rhododendron simsii HOM05D006105 ORTHO05D006345 2.6e-25 120.6 442 34.2
Sopen07g030920 Solanum pennellii HOM05D006105 ORTHO05D006345 3.3e-25 120.2 354 31.9
Gohir.D08G032500 Gossypium hirsutum HOM05D006105 ORTHO05D006345 1.3e-24 118.2 411 31.6
Solyc07g062685.2 Solanum lycopersicum HOM05D006105 ORTHO05D006345 1.7e-24 117.9 356 31.5
Gorai.004G029900 Gossypium raimondii HOM05D006105 ORTHO05D006345 2.2e-24 117.5 402 32.1
Nitab4.5_0003202g0040 Nicotiana tabacum HOM05D006105 ORTHO05D006345 2.2e-24 117.5 397 32.0
Gohir.A08G021700 Gossypium hirsutum HOM05D006105 ORTHO05D006345 2.8e-24 117.1 416 30.3
Atru.chr2.2260 Acer truncatum HOM05D006105 ORTHO05D006345 8.2e-24 115.5 319 32.0
Sopen12g005900 Solanum pennellii HOM05D006105 ORTHO05D006345 1.1e-23 115.2 411 31.6
Nitab4.5_0000246g0110 Nicotiana tabacum HOM05D006105 ORTHO05D006345 1.4e-23 114.8 389 31.6
Thecc.07G103600 Theobroma cacao HOM05D006105 ORTHO05D006345 1.4e-23 114.8 377 32.9
HanXRQChr12g0372831 Helianthus annuus HOM05D006105 ORTHO05D006345 7.0e-23 112.5 351 32.8
Nitab4.5_0005445g0040 Nicotiana tabacum HOM05D006105 ORTHO05D006345 7.0e-23 112.5 410 31.7
PGSC0003DMG400015376 Solanum tuberosum HOM05D006105 ORTHO05D006345 2.0e-22 110.9 324 33.3
Gorai.002G064700 Gossypium raimondii HOM05D006105 ORTHO05D006345 2.6e-22 110.5 377 29.7
Rhsim04G0024000 Rhododendron simsii HOM05D006105 ORTHO05D006345 4.5e-22 109.8 467 33.4
Dinv18338 Davidia involucrata HOM05D006105 ORTHO05D006345 7.7e-22 109.0 290 36.6
Lj8A152T79 Lonicera japonica HOM05D006105 ORTHO05D006345 1.3e-21 108.2 295 37.6
GSVIVG01014239001 Vitis vinifera HOM05D006105 ORTHO05D006345 2.2e-21 107.5 287 34.1
Oeu061338.1 Olea europaea HOM05D006105 ORTHO05D006345 6.5e-21 105.9 225 40.9
DCAR_013141 Daucus carota HOM05D006105 ORTHO05D006345 8.5e-21 105.5 420 31.9
FAN25G1303 Fragaria x ananassa HOM05D006105 ORTHO05D006345 1.5e-20 104.8 440 29.1
arahy.Tifrunner.gnm1.ann1.TTJ9YL Arachis hypogaea HOM05D006105 ORTHO05D006345 1.6e-19 101.3 361 33.5
arahy.Tifrunner.gnm1.ann1.KE6FEG Arachis hypogaea HOM05D006105 ORTHO05D006345 2.7e-19 100.5 366 31.7
Prupe.4G171200 Prunus persica HOM05D006105 ORTHO05D006345 2.7e-19 100.5 438 29.0
Actinidia07497 Actinidia chinensis HOM05D006105 ORTHO05D006345 6.1e-19 99.4 409 31.1
MD03G1238800 Malus domestica HOM05D006105 ORTHO05D006345 8.0e-19 99.0 433 27.5
CiPaw.12G115300 Carya illinoinensis HOM05D006105 ORTHO05D006345 1.4e-18 98.2 404 30.4
Cc05_g11450 Coffea canephora HOM05D006105 ORTHO05D006345 3.0e-18 97.1 249 34.9
Duzib268G0903 Durio zibethinus HOM05D006105 ORTHO05D006345 4.0e-18 96.7 419 30.1
PSO541G5705 Papaver somniferum HOM05D006105 ORTHO05D006345 4.0e-18 96.7 452 27.2
Peaxi162Scf00000g02515 Petunia axillaris HOM05D006105 ORTHO05D006345 4.0e-18 96.7 379 31.4
FAN21G1974 Fragaria x ananassa HOM05D006105 ORTHO05D006345 5.2e-18 96.3 442 28.5
DCAR_019586 Daucus carota HOM05D006105 ORTHO05D006345 6.7e-18 95.9 407 31.0
Peaxi162Scf00069g01930 Petunia axillaris HOM05D006105 ORTHO05D006345 8.8e-18 95.5 414 29.7
Lalb_Chr25g0286021 Lupinus albus HOM05D006105 ORTHO05D006345 1.1e-17 95.1 398 29.4
VMungo1080G1877 Vigna mungo HOM05D006105 ORTHO05D006345 1.1e-17 95.1 400 31.5
Lsat_1_v5_gn_5_129201 Lactuca sativa HOM05D006105 ORTHO05D006345 1.5e-17 94.7 425 32.0
arahy.Tifrunner.gnm1.ann1.LEI4AX Arachis hypogaea HOM05D006105 ORTHO05D006345 2.6e-17 94.0 378 31.2
Gohir.D01G045100 Gossypium hirsutum HOM05D006105 ORTHO05D006345 2.6e-17 94.0 375 26.7
FvH4_3g18750 Fragaria vesca HOM05D006105 ORTHO05D006345 7.5e-17 92.4 441 27.7
PSO675G6909 Papaver somniferum HOM05D006105 ORTHO05D006345 9.7e-17 92.0 453 26.5
TWI39G0145 Tripterygium wilfordii HOM05D006105 ORTHO05D006345 9.7e-17 92.0 391 29.4
Cpa.g.sc131.73 Carica papaya HOM05D006105 ORTHO05D006345 1.3e-16 91.7 454 29.3
Phvul.005G068000 Phaseolus vulgaris HOM05D006105 ORTHO05D006345 1.3e-16 91.7 401 31.2
CSS0004572 Camellia sinensis var. sinensis HOM05D006105 ORTHO05D006345 2.2e-16 90.9 228 36.0
RcHm_v2.0_Chr5g0031561 Rosa chinensis HOM05D006105 ORTHO05D006345 2.2e-16 90.9 437 30.2
Gohir.A01G059000 Gossypium hirsutum HOM05D006105 ORTHO05D006345 4.8e-16 89.7 220 32.3
COL.COLO4_17616 Corchorus olitorius HOM05D006105 ORTHO05D006345 6.3e-16 89.4 432 28.0
CiPaw.11G164300 Carya illinoinensis HOM05D006105 ORTHO05D006345 8.2e-16 89.0 322 32.6
Duzib213G0100 Durio zibethinus HOM05D006105 ORTHO05D006345 1.1e-15 88.6 423 29.1
MBI07_g17039_MAGBIO Magnolia biondii HOM05D006105 ORTHO05D006345 1.1e-15 88.6 368 28.3
PGSC0003DMG400021273 Solanum tuberosum HOM05D006105 ORTHO05D006345 1.1e-15 88.6 268 32.8
FAN11G0448 Fragaria x ananassa HOM05D006105 ORTHO05D006345 1.4e-15 88.2 442 27.6
FAN16G1829 Fragaria x ananassa HOM05D006105 ORTHO05D006345 2.4e-15 87.4 443 27.3
Sc03g0010360 Simmondsia chinensis HOM05D006105 ORTHO05D006345 2.4e-15 87.4 336 29.8
Nn1g09023 Nelumbo nucifera HOM05D006105 ORTHO05D006345 5.3e-15 86.3 428 27.8
DCAR_021012 Daucus carota HOM05D006105 ORTHO05D006345 9.1e-15 85.5 371 31.5
TAR629G1657 Trochodendron aralioides HOM05D006105 ORTHO05D006345 2.0e-14 84.3 390 29.0
Solyc12g014120.3 Solanum lycopersicum HOM05D006105 ORTHO05D006345 2.7e-14 84.0 99 48.5
TAR629G0423 Trochodendron aralioides HOM05D000109 ORTHO05D000965 7.7e-14 82.4 381 26.8
DCAR_024487 Daucus carota HOM05D006105 ORTHO05D006345 1.0e-13 82.0 235 31.5
Aqoxy1G02199 Aquilegia oxysepala HOM05D006105 ORTHO05D006345 1.3e-13 81.6 422 26.3
Glyma.06G232600 Glycine max HOM05D006105 ORTHO05D006345 2.2e-13 80.9 357 28.3
Manes.03G103501 Manihot esculenta HOM05D006105 ORTHO05D006345 2.2e-13 80.9 395 30.4
Lj3g0024128 Lotus japonicus HOM05D006105 ORTHO05D006345 2.9e-13 80.5 388 28.9
TWI38G0440 Tripterygium wilfordii HOM05D006105 ORTHO05D006345 1.5e-12 78.2 402 27.1
MD11G1258600 Malus domestica HOM05D006105 ORTHO05D006345 1.9e-12 77.8 432 29.2
ECA236G3415 Erigeron canadensis HOM05D006105 ORTHO05D006345 7.2e-12 75.9 285 30.5
CsaV3_4G033280 Cucumis sativus L. HOM05D006105 ORTHO05D006345 1.6e-11 74.7 400 27.0
Lsat_1_v5_gn_7_103061 Lactuca sativa HOM05D006105 ORTHO05D006345 1.6e-11 74.7 346 28.9
Migut.H01972 Erythranthe guttata HOM05D006105 ORTHO05D006345 6.1e-11 72.8 178 37.1
Eucgr.F01202 Eucalyptus grandis HOM05D006105 ORTHO05D006345 6.1e-11 72.8 274 29.9
PGSC0003DMG400012397 Solanum tuberosum HOM05D006105 ORTHO05D006345 6.1e-11 72.8 205 31.2
ClCG11G017660 Citrullus lanatus HOM05D006105 ORTHO05D006345 1.0e-10 72.0 411 28.5
Glyma.06G232800 Glycine max HOM05D006105 ORTHO05D006345 1.0e-10 72.0 268 32.5
TPR.G9213 Trifolium pratense HOM05D006105 ORTHO05D006345 1.8e-10 71.2 418 27.3
MELO3C025628.2 Cucumis melo HOM05D006105 ORTHO05D006345 5.2e-10 69.7 249 30.1
Dinv17387 Davidia involucrata HOM05D006105 ORTHO05D006345 6.8e-10 69.3 214 32.7
Glyma.13G271900 Glycine max HOM05D006105 ORTHO05D006345 8.8e-10 68.9 401 28.7
ATR0602G093 Amborella trichopoda HOM05D006105 ORTHO05D006345 1.2e-09 68.6 398 27.1
Ca_04016_v3 Cicer arietinum L. HOM05D006105 ORTHO05D006345 2.6e-09 67.4 433 26.6
Potri.001G375600 Populus trichocarpa HOM05D006105 ORTHO05D006345 5.7e-09 66.2 400 27.5
Glyma.12G228100 Glycine max HOM05D006105 ORTHO05D006345 1.7e-08 64.7 406 27.8
Oeu051102.1 Olea europaea HOM05D006105 ORTHO05D006345 1.7e-08 64.7 116 44.0
Sed0005720 Sechium edule HOM05D006105 ORTHO05D006345 1.7e-08 64.7 307 28.7
AUR62037870 Chenopodium quinoa HOM05D006105 ORTHO05D006345 2.8e-08 63.9 264 28.8
Sed0015488 Sechium edule HOM05D006105 ORTHO05D006345 1.4e-07 61.6 389 25.4
ClCG07G009910 Citrullus lanatus HOM05D006105 ORTHO05D006345 1.8e-07 61.2 431 26.9
Gohir.A13G148200 Gossypium hirsutum HOM05D006105 ORTHO05D006345 1.8e-07 61.2 207 33.8
unitig_747.g21582 Utricularia gibba HOM05D026394 ORTHO05D030051 2.4e-07 60.8 367 27.5
AUR62019562 Chenopodium quinoa HOM05D006105 ORTHO05D006345 4.1e-07 60.1 411 24.6
PGR083G1480 Punica granatum HOM05D006105 ORTHO05D006345 4.1e-07 60.1 372 28.0
Manes.17G052800 Manihot esculenta HOM05D013066 ORTHO05D010890 5.4e-07 59.7 239 28.9
Nn1g04330 Nelumbo nucifera HOM05D006105 ORTHO05D006345 5.4e-07 59.7 94 43.6
MELO3C016090.2 Cucumis melo HOM05D006105 ORTHO05D006345 9.1e-07 58.9 349 28.1
Medtr2g078220 Medicago truncatula HOM05D006105 ORTHO05D006345 9.1e-07 58.9 227 28.6
MBI06_g25724_MAGBIO Magnolia biondii HOM05D026394 ORTHO05D030051 3.5e-06 57.0 87 42.5
Nitab4.5_0003077g0030 Nicotiana tabacum HOM05D006105 ORTHO05D006345 4.5e-06 56.6 405 26.7


User provided reference genes

Program Settings