Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold159G37569 Striga asiatica HOM05D007122 ORTHO05D008918 4.7e-82 307.8 151 100.0
SGA_v2.0_scaffold87G27068 Striga asiatica HOM05D013351 ORTHO05D008918 2.1e-29 132.9 113 64.6
SGA_v2.0_scaffold104G30244 Striga asiatica HOM05D007122 ORTHO05D008918 1.1e-25 120.6 119 55.5
Migut.N02127 Erythranthe guttata HOM05D007122 ORTHO05D008918 1.5e-19 100.1 116 50.0
MSTRG.12208 Avicennia marina HOM05D007122 ORTHO05D008918 5.3e-17 91.7 114 47.4
TAR629G1569 Trochodendron aralioides HOM05D007122 ORTHO05D008918 4.5e-16 88.6 125 41.6
Cc02_g30330 Coffea canephora HOM05D007122 ORTHO05D008918 3.8e-15 85.5 114 40.4
Dinv25395 Davidia involucrata HOM05D007122 ORTHO05D008918 6.5e-15 84.7 112 42.9
unitig_0.g1006 Utricularia gibba HOM05D007122 ORTHO05D003998 1.1e-14 84.0 118 40.7
AUR62008050 Chenopodium quinoa HOM05D007122 ORTHO05D008918 1.5e-14 83.6 111 39.6
Dinv32665 Davidia involucrata HOM05D007122 ORTHO05D008918 1.9e-14 83.2 112 42.9
Ah.11g050690 Amaranthus hybridus HOM05D007122 ORTHO05D008918 2.5e-14 82.8 111 41.4
Nn1g00501 Nelumbo nucifera HOM05D007122 ORTHO05D008918 3.2e-14 82.4 115 44.3
Oeu050289.1 Olea europaea HOM05D007122 ORTHO05D008918 5.5e-14 81.6 113 42.5
Ca_20970_v3 Cicer arietinum L. HOM05D007122 ORTHO05D008918 7.2e-14 81.3 116 39.7
Potri.002G183700 Populus trichocarpa HOM05D007122 ORTHO05D008918 1.2e-13 80.5 114 40.4
Thecc.01G329100 Theobroma cacao HOM05D007122 ORTHO05D008918 1.2e-13 80.5 114 42.1
AUR62028625 Chenopodium quinoa HOM05D007122 ORTHO05D008918 1.6e-13 80.1 111 38.7
Nitab4.5_0000406g0060 Nicotiana tabacum HOM05D006934 ORTHO05D008743 1.6e-13 80.1 114 39.5
Solyc08g068590.4 Solanum lycopersicum HOM05D007122 ORTHO05D008918 1.6e-13 80.1 118 38.1
Sopen08g022350 Solanum pennellii HOM05D007122 ORTHO05D008918 1.6e-13 80.1 118 38.1
TWI59G0863 Tripterygium wilfordii HOM05D007122 ORTHO05D008918 1.6e-13 80.1 122 40.2
PGSC0003DMG400029047 Solanum tuberosum HOM05D007122 ORTHO05D008918 2.1e-13 79.7 123 36.6
Actinidia33027 Actinidia chinensis HOM05D007122 ORTHO05D008918 2.7e-13 79.3 126 37.3
HanXRQChr16g0524441 Helianthus annuus HOM05D007122 ORTHO05D008918 2.7e-13 79.3 119 38.7
PSO782G5442 Papaver somniferum HOM05D007122 ORTHO05D008918 2.7e-13 79.3 113 41.6
QL05p084392 Quercus lobata HOM05D007122 ORTHO05D008918 2.7e-13 79.3 116 39.7
COL.COLO4_23084 Corchorus olitorius HOM05D007122 ORTHO05D008918 3.6e-13 79.0 116 41.4
CAN.G21.48 Capsicum annuum HOM05D007122 ORTHO05D008918 6.1e-13 78.2 114 38.6
Prupe.3G022800 Prunus persica HOM05D007122 ORTHO05D008918 6.1e-13 78.2 116 39.7
CANSAT01G1971 Cannabis sativa HOM05D007122 ORTHO05D008918 8.0e-13 77.8 116 41.4
Lalb_Chr04g0264851 Lupinus albus HOM05D007122 ORTHO05D008918 8.0e-13 77.8 110 39.1
EL10Ac5g10570 Beta vulgaris HOM05D007122 ORTHO05D008918 1.4e-12 77.0 114 38.6
Duzib133G0914 Durio zibethinus HOM05D007122 ORTHO05D008918 1.4e-12 77.0 114 40.4
Peaxi162Scf00822g00313 Petunia axillaris HOM05D007122 ORTHO05D008918 1.4e-12 77.0 118 37.3
Cpa.g.sc57.60 Carica papaya HOM05D007122 ORTHO05D008918 1.8e-12 76.6 117 41.0
GSVIVG01027487001 Vitis vinifera HOM05D007122 ORTHO05D008918 1.8e-12 76.6 116 39.7
Aa31LG1G28270 Aethionema arabicum HOM05D007122 ORTHO05D008918 2.3e-12 76.3 115 39.1
ATR0579G047 Amborella trichopoda HOM05D007122 ORTHO05D008918 2.3e-12 76.3 109 41.3
Nitab4.5_0006202g0020 Nicotiana tabacum HOM05D007122 ORTHO05D008918 2.3e-12 76.3 111 38.7
VMungo0331G0463 Vigna mungo HOM05D000070 ORTHO05D003491 2.3e-12 76.3 115 40.9
ECA234G3018 Erigeron canadensis HOM05D007122 ORTHO05D008918 3.0e-12 75.9 113 38.1
Gorai.007G115100 Gossypium raimondii HOM05D007122 ORTHO05D008918 3.0e-12 75.9 114 40.4
Hma1.2p1_0074F.1_g038925 Hydrangea macrophylla HOM05D007122 ORTHO05D008918 3.0e-12 75.9 110 39.1
Lj9A610T61 Lonicera japonica HOM05D007122 ORTHO05D008918 4.0e-12 75.5 116 43.1
MBI12_g33188_MAGBIO Magnolia biondii HOM05D007122 ORTHO05D008918 4.0e-12 75.5 112 41.1
Medtr4g005390 Medicago truncatula HOM05D007122 ORTHO05D008918 4.0e-12 75.5 118 39.0
Lj3g0016159 Lotus japonicus HOM05D007122 ORTHO05D008918 5.2e-12 75.1 116 37.1
MD17G1162500 Malus domestica HOM05D007122 ORTHO05D008918 5.2e-12 75.1 113 38.9
Sc05g0001590 Simmondsia chinensis HOM05D007122 ORTHO05D008918 5.2e-12 75.1 113 38.1
vmacro08515 Vaccinium macrocarpon HOM05D007122 ORTHO05D008918 5.2e-12 75.1 111 38.7
Gohir.D11G107500 Gossypium hirsutum HOM05D007122 ORTHO05D008918 6.7e-12 74.7 114 39.5
CiPaw.01G090900 Carya illinoinensis HOM05D007122 ORTHO05D008918 8.8e-12 74.3 125 36.8
RcHm_v2.0_Chr2g0149531 Rosa chinensis HOM05D007122 ORTHO05D008918 8.8e-12 74.3 113 38.1
arahy.Tifrunner.gnm1.ann1.XK7RJX Arachis hypogaea HOM05D007122 ORTHO05D008918 1.2e-11 73.9 110 40.0
FAN05G3936 Fragaria x ananassa HOM05D007122 ORTHO05D008918 1.2e-11 73.9 113 38.9
Lsat_1_v5_gn_4_31280 Lactuca sativa HOM05D007122 ORTHO05D008918 1.2e-11 73.9 119 39.5
Phvul.010G164100 Phaseolus vulgaris HOM05D007122 ORTHO05D008918 1.2e-11 73.9 115 40.0
Sp4g28930 Schrenkiella parvula HOM05D007122 ORTHO05D008918 1.2e-11 73.9 114 37.7
TPR.G38811 Trifolium pratense HOM05D007122 ORTHO05D008918 1.2e-11 73.9 117 38.5
CDE02G4652 Ceratophyllum demersum HOM05D007122 ORTHO05D008918 1.5e-11 73.6 118 38.1
Thhalv10001577m.g Eutrema salsugineum HOM05D007122 ORTHO05D008918 1.5e-11 73.6 114 38.6
FAN14G1589 Fragaria x ananassa HOM05D007122 ORTHO05D008918 1.5e-11 73.6 113 38.1
Manes.01G237100 Manihot esculenta HOM05D007122 ORTHO05D008918 1.5e-11 73.6 120 39.2
BcaC02g12634 Brassica carinata HOM05D007122 ORTHO05D008918 2.0e-11 73.2 114 38.6
A05p00930 Brassica napus HOM05D007122 ORTHO05D008918 2.0e-11 73.2 114 38.6
Atru.chr5.816 Acer truncatum HOM05D007122 ORTHO05D008918 2.6e-11 72.8 116 37.9
BraA05t19094Z Brassica rapa HOM05D007122 ORTHO05D008918 3.3e-11 72.4 115 38.3
Carub.0004s2963 Capsella rubella HOM05D007122 ORTHO05D008918 3.3e-11 72.4 114 36.8
CARHR142260 Cardamine hirsuta HOM05D007122 ORTHO05D008918 3.3e-11 72.4 124 37.9
FvH4_6g36990 Fragaria vesca HOM05D007122 ORTHO05D008918 3.3e-11 72.4 113 38.1
C04p01080 Brassica napus HOM05D006867 ORTHO05D008676 5.7e-11 71.6 115 38.3
Eucgr.E00013 Eucalyptus grandis HOM05D007122 ORTHO05D008918 5.7e-11 71.6 116 35.3
Ciclev10021604m.g Citrus clementina HOM05D007122 ORTHO05D008918 7.5e-11 71.2 116 37.1
AT2G46910 Arabidopsis thaliana HOM05D007122 ORTHO05D008918 9.7e-11 70.9 120 35.8
arahy.Tifrunner.gnm1.ann1.KLKB5C Arachis hypogaea HOM05D007122 ORTHO05D008918 9.7e-11 70.9 110 38.2
Rhsim04G0175900 Rhododendron simsii HOM05D007122 ORTHO05D008918 1.3e-10 70.5 114 35.1
Os10g0509200 Oryza sativa ssp. japonica HOM05D007122 ORTHO05D008918 1.7e-10 70.1 113 38.1
Glyma.07G002100 Glycine max HOM05D007122 ORTHO05D008918 2.2e-10 69.7 124 37.9
Psat7g265240 Pisum sativum HOM05D007122 ORTHO05D008918 2.2e-10 69.7 124 35.5
HPP92_007409 Vanilla planifolia HOM05D007122 ORTHO05D008918 2.2e-10 69.7 120 37.5
Mapoly0069s0014 Marchantia polymorpha HOM05D007122 ORTHO05D008918 1.1e-09 67.4 109 34.9
Aqoxy5G04392 Aquilegia oxysepala HOM05D007122 ORTHO05D008918 3.1e-09 65.9 113 39.8
Hund02816 Selenicereus undatus HOM05D007122 ORTHO05D008918 3.1e-09 65.9 111 34.2
Zm00001eb220590 Zea mays HOM05D007122 ORTHO05D008918 3.1e-09 65.9 113 37.2
PGR042G2951 Punica granatum HOM05D007122 ORTHO05D008918 4.1e-09 65.5 116 35.3
CsaV3_3G030490 Cucumis sativus L. HOM05D007122 ORTHO05D008918 1.6e-08 63.5 110 37.3
ClCG07G014660 Citrullus lanatus HOM05D007122 ORTHO05D008918 2.7e-08 62.8 110 36.4
MELO3C026712.2 Cucumis melo HOM05D007122 ORTHO05D008918 2.7e-08 62.8 110 37.3
THA.LOC104802109 Tarenaya hassleriana HOM05D007122 ORTHO05D008918 2.7e-08 62.8 115 36.5
Sabra02G0131900 Salix brachista HOM05D007122 ORTHO05D008918 1.0e-07 60.8 143 30.8
Glyma.14G134000 Glycine max HOM05D007122 ORTHO05D008918 1.3e-07 60.5 124 34.7
Pp3c2_10460 Physcomitrium patens HOM05D007122 ORTHO05D008918 1.9e-06 56.6 111 28.8
SMO232G0083 Selaginella moellendorffii HOM05D007122 ORTHO05D008918 3.2e-06 55.8 110 31.8
QL05p083819 Quercus lobata HOM05D007122 ORTHO05D008918 7.2e-06 54.7 54 51.9


User provided reference genes

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