Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold110G31269 Striga asiatica HOM05D004368 ORTHO05D004990 8.4e-216 753.4 390 100.0
Migut.L01998 Erythranthe guttata HOM05D004368 ORTHO05D004990 5.5e-90 335.5 407 50.6
SalBow5G3644 Salvia bowleyana HOM05D004368 ORTHO05D004990 1.7e-78 297.4 404 48.5
SalBow5G0362 Salvia bowleyana HOM05D004368 ORTHO05D004990 8.2e-78 295.0 404 48.3
unitig_27.g24839 Utricularia gibba HOM05D004368 ORTHO05D004990 1.1e-77 294.7 401 46.6
Cc06_g01580 Coffea canephora HOM05D004368 ORTHO05D004990 1.3e-75 287.7 400 47.8
unitig_699.g19383 Utricularia gibba HOM05D004368 ORTHO05D004990 4.8e-70 269.2 401 43.6
unitig_27.g24862 Utricularia gibba HOM05D004368 ORTHO05D004990 2.0e-68 263.8 319 50.5
QL05p003761 Quercus lobata HOM05D004368 ORTHO05D004990 3.8e-67 259.6 311 50.2
Duzib160G0466 Durio zibethinus HOM05D004368 ORTHO05D004990 1.5e-66 257.7 310 51.0
Oeu064511.1 Olea europaea HOM05D004368 ORTHO05D004990 9.4e-66 255.0 306 52.3
Thecc.06G124200 Theobroma cacao HOM05D004368 ORTHO05D004990 1.2e-65 254.6 347 47.8
Manes.11G016500 Manihot esculenta HOM05D004368 ORTHO05D004990 3.6e-65 253.1 311 50.5
HanXRQChr15g0497161 Helianthus annuus HOM05D004368 ORTHO05D004990 4.7e-65 252.7 318 46.9
Nitab4.5_0003342g0020 Nicotiana tabacum HOM05D004368 ORTHO05D004990 4.7e-65 252.7 332 48.5
Peaxi162Scf01157g00111 Petunia axillaris HOM05D004368 ORTHO05D004990 6.1e-65 252.3 323 49.8
Nitab4.5_0000845g0110 Nicotiana tabacum HOM05D004368 ORTHO05D004990 1.4e-64 251.1 332 48.2
Duzib235G0527 Durio zibethinus HOM05D004368 ORTHO05D004990 1.8e-64 250.8 310 49.7
CAN.G941.28 Capsicum annuum HOM05D004368 ORTHO05D004990 2.3e-64 250.4 373 45.6
CiPaw.01G216100 Carya illinoinensis HOM05D004368 ORTHO05D004990 2.3e-64 250.4 311 48.9
Haze_16075 Corylus avellana HOM05D004368 ORTHO05D004990 3.0e-64 250.0 308 49.7
Sopen06g002970 Solanum pennellii HOM05D004368 ORTHO05D004990 3.0e-64 250.0 343 47.2
Psat4g167320 Pisum sativum HOM05D004368 ORTHO05D004990 4.0e-64 249.6 324 47.8
TPR.G29997 Trifolium pratense HOM05D004368 ORTHO05D004990 4.0e-64 249.6 347 45.5
Ciclev10026090m.g Citrus clementina HOM05D004368 ORTHO05D004990 6.7e-64 248.8 396 41.7
Gohir.A05G138800 Gossypium hirsutum HOM05D004368 ORTHO05D004990 6.7e-64 248.8 310 50.0
MD17G1148400 Malus domestica HOM05D004368 ORTHO05D004990 8.8e-64 248.4 316 50.0
Potri.001G166000 Populus trichocarpa HOM05D004368 ORTHO05D004990 8.8e-64 248.4 311 49.8
DCAR_022662 Daucus carota HOM05D004368 ORTHO05D004990 1.1e-63 248.1 311 48.6
FAN14G3095 Fragaria x ananassa HOM05D004368 ORTHO05D004990 1.1e-63 248.1 315 51.4
Gohir.D05G141000 Gossypium hirsutum HOM05D004368 ORTHO05D004990 1.1e-63 248.1 315 49.5
Gorai.009G145200 Gossypium raimondii HOM05D004368 ORTHO05D004990 1.1e-63 248.1 310 49.7
Peaxi162Scf00043g02929 Petunia axillaris HOM05D004368 ORTHO05D004990 2.0e-63 247.3 323 48.0
Solyc06g008160.4 Solanum lycopersicum HOM05D004368 ORTHO05D004990 2.0e-63 247.3 311 49.2
Eucgr.F02457 Eucalyptus grandis HOM05D004368 ORTHO05D004990 2.6e-63 246.9 321 48.3
FAN09G0342 Fragaria x ananassa HOM05D004368 ORTHO05D004990 3.3e-63 246.5 315 50.2
Hund18675 Selenicereus undatus HOM05D004368 ORTHO05D004990 3.3e-63 246.5 320 47.2
Sc15g0000580 Simmondsia chinensis HOM05D004368 ORTHO05D004990 4.4e-63 246.1 309 49.2
CSS0030612 Camellia sinensis var. sinensis HOM05D004368 ORTHO05D004990 5.7e-63 245.7 311 48.2
DCAR_016106 Daucus carota HOM05D004368 ORTHO05D004990 5.7e-63 245.7 333 45.9
Hma1.2p1_0414F.1_g147650 Hydrangea macrophylla HOM05D004368 ORTHO05D004990 5.7e-63 245.7 319 48.3
CsaV3_3G030850 Cucumis sativus L. HOM05D000945 ORTHO05D000919 9.7e-63 245.0 330 46.4
AUR62001444 Chenopodium quinoa HOM05D004368 ORTHO05D004990 1.3e-62 244.6 366 45.1
FvH4_6g35160 Fragaria vesca HOM05D004368 ORTHO05D004990 1.3e-62 244.6 315 49.8
TAR626G1097 Trochodendron aralioides HOM05D004368 ORTHO05D004990 1.3e-62 244.6 321 48.6
RcHm_v2.0_Chr2g0146421 Rosa chinensis HOM05D004368 ORTHO05D004990 1.7e-62 244.2 315 49.5
vmacro06407 Vaccinium macrocarpon HOM05D004368 ORTHO05D004990 1.7e-62 244.2 318 48.4
Ah.15g095150 Amaranthus hybridus HOM05D004368 ORTHO05D004990 2.2e-62 243.8 387 43.2
Actinidia21803 Actinidia chinensis HOM05D004368 ORTHO05D004990 3.7e-62 243.0 318 48.1
CAN.G1487.1 Capsicum annuum HOM05D004368 ORTHO05D004990 3.7e-62 243.0 333 46.5
ECA248G3608 Erigeron canadensis HOM05D004368 ORTHO05D004990 3.7e-62 243.0 317 46.7
FAN02G3674 Fragaria x ananassa HOM05D004368 ORTHO05D004990 3.7e-62 243.0 315 49.5
FAN05G4100 Fragaria x ananassa HOM05D004368 ORTHO05D004990 3.7e-62 243.0 315 49.5
Lj9C535T4 Lonicera japonica HOM05D004368 ORTHO05D004990 3.7e-62 243.0 317 47.3
Medtr8g022040 Medicago truncatula HOM05D004368 ORTHO05D004990 4.8e-62 242.7 324 46.6
Rhsim08G0241200 Rhododendron simsii HOM05D004368 ORTHO05D004990 4.8e-62 242.7 318 48.1
Sed0018133 Sechium edule HOM05D004368 ORTHO05D004990 4.8e-62 242.7 351 44.4
ClCG07G014470 Citrullus lanatus HOM05D004368 ORTHO05D004990 8.2e-62 241.9 330 46.4
ECA247G3177 Erigeron canadensis HOM05D004368 ORTHO05D004990 8.2e-62 241.9 313 47.0
Actinidia32205 Actinidia chinensis HOM05D004368 ORTHO05D004990 1.1e-61 241.5 311 47.6
Hma1.2p1_0311F.1_g121230 Hydrangea macrophylla HOM05D004368 ORTHO05D004990 1.4e-61 241.1 314 47.5
Sabra01G0127300 Salix brachista HOM05D004368 ORTHO05D004990 1.4e-61 241.1 348 46.3
Cpa.g.sc25.148 Carica papaya HOM05D004368 ORTHO05D004990 1.8e-61 240.7 302 49.3
VMungo0540G1553 Vigna mungo HOM05D004368 ORTHO05D004990 2.4e-61 240.4 337 45.7
GSVIVG01016719001 Vitis vinifera HOM05D004368 ORTHO05D004990 2.4e-61 240.4 318 48.1
MELO3C022680.2 Cucumis melo HOM05D004368 ORTHO05D004990 4.1e-61 239.6 363 42.4
Glyma.16G010200 Glycine max HOM05D004368 ORTHO05D004990 4.1e-61 239.6 341 45.2
AUR62009921 Chenopodium quinoa HOM05D004368 ORTHO05D004990 5.3e-61 239.2 366 44.5
TWI23G0003 Tripterygium wilfordii HOM05D004368 ORTHO05D004990 5.3e-61 239.2 325 46.5
Ca_23409_v3 Cicer arietinum L. HOM05D004368 ORTHO05D004990 7.0e-61 238.8 323 47.1
MBI02_g13231_MAGBIO Magnolia biondii HOM05D004368 ORTHO05D004990 7.0e-61 238.8 313 48.2
Sopen09g028680 Solanum pennellii HOM05D004368 ORTHO05D004990 7.0e-61 238.8 333 46.2
Aqoxy7G01007 Aquilegia oxysepala HOM05D004368 ORTHO05D004990 1.2e-60 238.0 315 48.9
PGSC0003DMG400003792 Solanum tuberosum HOM05D004368 ORTHO05D004990 1.2e-60 238.0 333 45.9
Gohir.D06G201700 Gossypium hirsutum HOM05D004368 ORTHO05D004990 1.6e-60 237.7 310 47.4
Lj3g0026199 Lotus japonicus HOM05D004368 ORTHO05D004990 1.6e-60 237.7 352 44.6
Gorai.010G235500 Gossypium raimondii HOM05D004368 ORTHO05D004990 2.7e-60 236.9 310 47.4
Solyc09g072880.3 Solanum lycopersicum HOM05D004368 ORTHO05D004990 2.7e-60 236.9 333 45.6
TAR468G0014 Trochodendron aralioides HOM05D004368 ORTHO05D004990 2.7e-60 236.9 321 47.0
COL.COLO4_30792 Corchorus olitorius HOM05D004368 ORTHO05D004990 4.5e-60 236.1 353 44.5
Sopen09g028700 Solanum pennellii HOM05D004368 ORTHO05D004990 4.5e-60 236.1 310 47.4
Phvul.006G206500 Phaseolus vulgaris HOM05D004368 ORTHO05D004990 1.0e-59 235.0 322 46.0
EL10Ac7g16443 Beta vulgaris HOM05D004368 ORTHO05D004990 1.3e-59 234.6 388 42.5
Gohir.A06G193900 Gossypium hirsutum HOM05D004368 ORTHO05D004990 1.3e-59 234.6 315 46.7
Glyma.07G041700 Glycine max HOM05D004368 ORTHO05D004990 1.7e-59 234.2 340 44.7
MD09G1178400 Malus domestica HOM05D004368 ORTHO05D004990 1.7e-59 234.2 316 47.8
Nn8g38578 Nelumbo nucifera HOM05D004368 ORTHO05D004990 1.7e-59 234.2 324 44.4
ATR0568G120 Amborella trichopoda HOM05D004368 ORTHO05D004990 2.9e-59 233.4 311 46.9
Lalb_Chr17g0343461 Lupinus albus HOM05D004368 ORTHO05D004990 3.8e-59 233.0 343 45.5
CANSAT56G3889 Cannabis sativa HOM05D004368 ORTHO05D004990 5.0e-59 232.6 298 49.3
PGR119G1615 Punica granatum HOM05D004368 ORTHO05D004990 5.0e-59 232.6 315 46.7
Aa31LG8G1340 Aethionema arabicum HOM05D004368 ORTHO05D004990 8.5e-59 231.9 381 42.0
CARHR088970 Cardamine hirsuta HOM05D004368 ORTHO05D004990 2.5e-58 230.3 312 46.5
Lj5A32G57 Lonicera japonica HOM05D004368 ORTHO05D004990 3.2e-58 229.9 378 40.7
A05p35340 Brassica napus HOM05D004368 ORTHO05D004990 7.2e-58 228.8 312 45.5
BraA05t22344Z Brassica rapa HOM05D004368 ORTHO05D004990 7.2e-58 228.8 312 45.5
Lsat_1_v5_gn_4_91400 Lactuca sativa HOM05D004368 ORTHO05D004990 1.2e-57 228.0 306 46.4
AL3G26340 Arabidopsis lyrata HOM05D004368 ORTHO05D004990 2.1e-57 227.3 312 46.2
C05p53530 Brassica napus HOM05D004368 ORTHO05D004990 3.6e-57 226.5 312 45.8
BolC5t34030H Brassica oleracea HOM05D004368 ORTHO05D004990 3.6e-57 226.5 312 45.8
Sp3g12370 Schrenkiella parvula HOM05D004368 ORTHO05D004990 1.0e-56 224.9 316 44.9
AT3G14110 Arabidopsis thaliana HOM05D004368 ORTHO05D004990 2.3e-56 223.8 312 45.5
A03p38620 Brassica napus HOM05D004368 ORTHO05D004990 2.3e-56 223.8 313 47.0
Carub.0003s1372 Capsella rubella HOM05D004368 ORTHO05D004990 2.3e-56 223.8 312 45.8
THA.LOC104822665 Tarenaya hassleriana HOM05D004368 ORTHO05D004990 2.3e-56 223.8 309 46.3
BcaB04g18818 Brassica carinata HOM05D004368 ORTHO05D004990 3.0e-56 223.4 313 46.3
BcaC01g03958 Brassica carinata HOM05D004368 ORTHO05D004990 3.0e-56 223.4 313 47.0
BolC3t16938H Brassica oleracea HOM05D004368 ORTHO05D004990 3.0e-56 223.4 313 47.0
Thhalv10021156m.g Eutrema salsugineum HOM05D004368 ORTHO05D004990 5.2e-56 222.6 312 45.2
BraA03t13009Z Brassica rapa HOM05D004368 ORTHO05D004990 8.8e-56 221.9 313 46.6
PSO386G0078 Papaver somniferum HOM05D004368 ORTHO05D004990 8.8e-56 221.9 317 45.7
C03p46730 Brassica napus HOM05D004368 ORTHO05D004990 1.5e-55 221.1 313 46.3
PSO724G0024 Papaver somniferum HOM05D004368 ORTHO05D004990 1.5e-55 221.1 317 45.7
HPP92_003012 Vanilla planifolia HOM05D004368 ORTHO05D004990 1.5e-55 221.1 310 45.8
HanXRQChr09g0277121 Helianthus annuus HOM05D004368 ORTHO05D004990 2.0e-55 220.7 309 46.0
Lalb_Chr04g0253731 Lupinus albus HOM05D004368 ORTHO05D004990 7.5e-55 218.8 341 43.4
Prupe.3G037600 Prunus persica HOM05D004368 ORTHO05D004990 9.8e-55 218.4 160 72.5
Dinv20409 Davidia involucrata HOM05D004368 ORTHO05D004990 2.8e-54 216.9 162 71.0
Dinv37846 Davidia involucrata HOM05D004368 ORTHO05D004990 1.1e-53 214.9 170 67.6
FAN05G2230 Fragaria x ananassa HOM05D004368 ORTHO05D004990 2.4e-53 213.8 159 74.8
CDE04G0878 Ceratophyllum demersum HOM05D004368 ORTHO05D004990 3.5e-52 209.9 313 43.5
Os01g0510600 Oryza sativa ssp. japonica HOM05D004368 ORTHO05D004990 7.7e-52 208.8 304 43.4
CDE05G2024 Ceratophyllum demersum HOM05D004368 ORTHO05D004990 1.7e-51 207.6 323 40.6
Zm00001eb308830 Zea mays HOM05D004368 ORTHO05D004990 1.7e-51 207.6 319 41.4
Atru.chr1.4083 Acer truncatum HOM05D004368 ORTHO05D004990 5.5e-50 202.6 157 71.3
Nn6g35672 Nelumbo nucifera HOM05D004368 ORTHO05D004990 8.0e-49 198.7 285 43.9
arahy.Tifrunner.gnm1.ann1.26KYL2 Arachis hypogaea HOM05D004368 ORTHO05D004990 1.2e-47 194.9 321 40.5
BcaC05g29122 Brassica carinata HOM05D004368 ORTHO05D004990 2.0e-47 194.1 312 41.7
arahy.Tifrunner.gnm1.ann1.AFL61P Arachis hypogaea HOM05D004368 ORTHO05D004990 5.7e-47 192.6 266 44.0
Nitab4.5_0006980g0020 Nicotiana tabacum HOM05D004368 ORTHO05D004990 3.7e-46 189.9 258 46.5
Atru.chr1.4073 Acer truncatum HOM05D004368 ORTHO05D004990 1.4e-45 188.0 266 46.2
Nitab4.5_0000326g0270 Nicotiana tabacum HOM05D004368 ORTHO05D004990 7.0e-45 185.7 261 45.6
HPP92_027544 Vanilla planifolia HOM05D004368 ORTHO05D004990 1.6e-44 184.5 154 65.6
Os02g0586800 Oryza sativa ssp. japonica HOM05D004368 ORTHO05D004990 1.1e-42 178.3 293 41.3
Gorai.004G102400 Gossypium raimondii HOM05D004368 ORTHO05D004990 3.3e-42 176.8 279 42.7
CDE05G2107 Ceratophyllum demersum HOM05D004368 ORTHO05D004990 3.6e-41 173.3 155 59.4
Mapoly0108s0002 Marchantia polymorpha HOM05D004368 ORTHO05D004990 8.9e-40 168.7 352 36.6
Mapoly0110s0050 Marchantia polymorpha HOM05D004368 ORTHO05D004990 8.9e-40 168.7 352 36.6
Gorai.001G096600 Gossypium raimondii HOM05D004368 ORTHO05D004990 1.3e-38 164.9 298 42.3
Gohir.D07G090325 Gossypium hirsutum HOM05D004368 ORTHO05D004990 2.0e-36 157.5 141 62.4
Zm00001eb245590 Zea mays HOM05D004368 ORTHO05D004990 3.5e-36 156.8 141 58.9
Gohir.D08G096333 Gossypium hirsutum HOM05D004368 ORTHO05D004990 8.6e-35 152.1 279 39.8
AagrBONN_evm.TU.Sc2ySwM_228.3011 Anthoceros agrestis HOM05D004368 ORTHO05D004990 3.3e-34 150.2 276 37.3
CBR_g39266 Chara braunii HOM05D004368 ORTHO05D004990 2.8e-33 147.1 273 37.4
Pp3c11_3130 Physcomitrium patens HOM05D004368 ORTHO05D004990 3.1e-32 143.7 274 36.1
Rhsim03G0211800 Rhododendron simsii HOM05D004368 ORTHO05D004990 1.4e-29 134.8 162 51.2
SMO141G0180 Selaginella moellendorffii HOM05D004368 ORTHO05D004990 4.6e-28 129.8 275 33.1
MSTRG.5591 Avicennia marina HOM05D004368 ORTHO05D004990 1.3e-14 85.1 121 45.5
PGSC0003DMG400014712 Solanum tuberosum HOM05D004368 ORTHO05D004990 3.8e-14 83.6 60 70.0
Cre10.g460050 Chlamydomonas reinhardtii HOM05D004368 ORTHO05D004990 4.9e-14 83.2 275 28.4
TWI14G0995 Tripterygium wilfordii HOM05D004368 ORTHO05D004990 2.7e-12 77.4 60 61.7
TAR624G0904 Trochodendron aralioides HOM05D004368 ORTHO05D004990 7.3e-10 69.3 55 69.1
CBR_g29854 Chara braunii HOM05D004368 ORTHO05D004990 2.8e-09 67.4 72 54.2
TAR624G0589 Trochodendron aralioides HOM05D004368 ORTHO05D004990 3.1e-08 63.9 50 62.0
PRCOL_00003238 Prasinoderma coloniale HOM05D004368 ORTHO05D004990 6.9e-08 62.8 278 28.1
MCO14G328 Micromonas commoda HOM05D004368 ORTHO05D004990 1.2e-07 62.0 276 28.6
RcHm_v2.0_Chr5g0074611 Rosa chinensis HOM05D004368 ORTHO05D004990 1.7e-06 58.2 54 61.1


User provided reference genes

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