Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold109G31052 Striga asiatica HOM05D001991 ORTHO05D002030 6.0e-194 680.6 338 100.0
SGA_v2.0_scaffold58G20423 Striga asiatica HOM05D001375 ORTHO05D001222 2.5e-46 190.3 208 55.3
SGA_v2.0_scaffold32G13265 Striga asiatica HOM05D006293 ORTHO05D007971 5.9e-40 169.1 207 50.7
MSTRG.16883 Avicennia marina HOM05D001991 ORTHO05D002030 9.7e-35 151.8 208 49.0
MSTRG.20015 Avicennia marina HOM05D001991 ORTHO05D002030 2.8e-34 150.2 207 46.4
SalBow3G1371 Salvia bowleyana HOM05D001991 ORTHO05D002030 7.7e-32 142.1 209 45.5
SalBow6G0737 Salvia bowleyana HOM05D001991 ORTHO05D002030 3.6e-29 133.3 237 41.4
Oeu055650.2 Olea europaea HOM05D001991 ORTHO05D002030 1.4e-25 121.3 213 39.9
unitig_21.g20015 Utricularia gibba HOM05D001991 ORTHO05D002030 4.1e-25 119.8 209 38.8
Solyc01g111200.3 Solanum lycopersicum HOM05D001991 ORTHO05D002030 1.3e-23 114.8 207 41.5
Sopen01g053250 Solanum pennellii HOM05D001991 ORTHO05D002030 2.2e-23 114.0 251 38.2
Oeu050537.1 Olea europaea HOM05D001991 ORTHO05D002030 1.9e-22 110.9 216 38.4
Nitab4.5_0000980g0040 Nicotiana tabacum HOM05D001991 ORTHO05D002030 4.7e-21 106.3 215 39.5
Nitab4.5_0000283g0030 Nicotiana tabacum HOM05D001991 ORTHO05D002030 1.4e-20 104.8 303 32.3
unitig_0.g828 Utricularia gibba HOM05D001991 ORTHO05D002030 2.3e-20 104.0 184 40.2
Actinidia20489 Actinidia chinensis HOM05D001991 ORTHO05D002030 5.7e-19 99.4 212 37.3
Migut.B00116 Erythranthe guttata HOM05D001991 ORTHO05D002030 1.3e-18 98.2 201 41.3
unitig_578.g16748 Utricularia gibba HOM05D001991 ORTHO05D002030 3.7e-18 96.7 155 39.4
SGA_v2.0_scaffold109G31057 Striga asiatica HOM05D001991 ORTHO05D400159 1.3e-15 88.2 43 97.7
CSS0034955 Camellia sinensis var. sinensis HOM05D001991 ORTHO05D002030 1.7e-15 87.8 253 32.0
Dinv04963 Davidia involucrata HOM05D006293 ORTHO05D007971 2.3e-15 87.4 237 34.2
DCAR_022779 Daucus carota HOM05D001991 ORTHO05D002030 5.0e-15 86.3 210 39.0
Oeu060420.1 Olea europaea HOM05D001991 ORTHO05D002030 4.2e-14 83.2 195 33.8
Oeu042186.2 Olea europaea HOM05D001991 ORTHO05D002030 1.6e-13 81.3 238 33.2
Cc02_g16460 Coffea canephora HOM05D001991 ORTHO05D002030 4.7e-13 79.7 217 37.3
AL7G10600 Arabidopsis lyrata HOM05D001991 ORTHO05D002030 1.0e-12 78.6 260 33.1
Dinv41971 Davidia involucrata HOM05D001991 ORTHO05D002030 1.0e-12 78.6 231 33.3
Ah.01g022660 Amaranthus hybridus HOM05D001991 ORTHO05D002030 2.3e-12 77.4 316 29.1
TAR376G0062 Trochodendron aralioides HOM05D001991 ORTHO05D002030 5.2e-12 76.3 249 31.7
SGA_v2.0_scaffold79G25540 Striga asiatica HOM05D001991 ORTHO05D403742 8.9e-12 75.5 79 55.7
Lj5P183T88 Lonicera japonica HOM05D001991 ORTHO05D002030 2.6e-11 73.9 111 43.2
Sc08g0003150 Simmondsia chinensis HOM05D001991 ORTHO05D002030 2.6e-11 73.9 224 33.0
Peaxi162Scf00362g00949 Petunia axillaris HOM05D001991 ORTHO05D002030 3.4e-11 73.6 217 32.7
vmacro02254 Vaccinium macrocarpon HOM05D001991 ORTHO05D002030 5.7e-11 72.8 160 36.2
Lj9P390T58 Lonicera japonica HOM05D001991 ORTHO05D002030 1.3e-10 71.6 143 42.0
Cpa.g.sc37.183 Carica papaya HOM05D001991 ORTHO05D002030 2.2e-10 70.9 216 33.8
Sp7g37080 Schrenkiella parvula HOM05D001991 ORTHO05D002030 8.3e-10 68.9 257 31.5
Aa31LG6G16470 Aethionema arabicum HOM05D001991 ORTHO05D002030 1.8e-09 67.8 218 32.6
AT4G38710 Arabidopsis thaliana HOM05D001991 ORTHO05D002030 2.4e-09 67.4 261 32.6
MELO3C013373.2 Cucumis melo HOM05D001991 ORTHO05D002030 3.1e-09 67.0 260 28.5
Sabra09G0099600 Salix brachista HOM05D001991 ORTHO05D002030 4.1e-09 66.6 204 34.3
Sabra09G0100900 Salix brachista HOM05D001991 ORTHO05D002030 4.1e-09 66.6 204 34.3
SGA_v2.0_scaffold153G36973 Striga asiatica HOM05D005802 ORTHO05D006992 4.1e-09 66.6 70 54.3
SalBow6G1817 Salvia bowleyana HOM05D000195 ORTHO05D000248 5.4e-09 66.2 49 65.3
Rhsim11G0188300 Rhododendron simsii HOM05D001991 ORTHO05D002030 1.2e-08 65.1 265 32.5
CANSAT25G2203 Cannabis sativa HOM05D001991 ORTHO05D002030 2.7e-08 63.9 258 28.7
Carub.0007s0058 Capsella rubella HOM05D001991 ORTHO05D002030 3.5e-08 63.5 260 30.8
CARHR294420 Cardamine hirsuta HOM05D001991 ORTHO05D002030 4.5e-08 63.2 231 31.2
SGA_v2.0_scaffold11G05942 Striga asiatica HOM05D000485 ORTHO05D002030 5.9e-08 62.8 50 64.0
TAR628G0391 Trochodendron aralioides HOM05D001991 ORTHO05D002030 5.9e-08 62.8 210 30.5
GSVIVG01024072001 Vitis vinifera HOM05D001991 ORTHO05D002030 7.8e-08 62.4 197 29.9
Haze_02190 Corylus avellana HOM05D001991 ORTHO05D002030 1.0e-07 62.0 219 28.3
THA.LOC104804098 Tarenaya hassleriana HOM05D001991 ORTHO05D002030 1.3e-07 61.6 244 28.7
Manes.11G090500 Manihot esculenta HOM05D001991 ORTHO05D002030 1.7e-07 61.2 221 32.1
Lj3g0017262 Lotus japonicus HOM05D001991 ORTHO05D002030 2.3e-07 60.8 174 35.1
arahy.Tifrunner.gnm1.ann1.H3HBDV Arachis hypogaea HOM05D001991 ORTHO05D002030 2.9e-07 60.5 231 29.0
AUR62010082 Chenopodium quinoa HOM05D001991 ORTHO05D002030 2.9e-07 60.5 245 31.0
MELO3C020790.2 Cucumis melo HOM05D001991 ORTHO05D002030 2.9e-07 60.5 260 25.8
CsaV3_2G015760 Cucumis sativus L. HOM05D001991 ORTHO05D002030 2.9e-07 60.5 260 25.8
Potri.009G130200 Populus trichocarpa HOM05D001991 ORTHO05D002030 2.9e-07 60.5 220 31.8
arahy.Tifrunner.gnm1.ann1.CXE5JY Arachis hypogaea HOM05D001991 ORTHO05D002030 3.8e-07 60.1 231 29.0
Sabra04G0113400 Salix brachista HOM05D001991 ORTHO05D002030 6.6e-07 59.3 204 33.3
Duzib052G0141 Durio zibethinus HOM05D001991 ORTHO05D002030 1.1e-06 58.5 229 31.4
Thhalv10025358m.g Eutrema salsugineum HOM05D001991 ORTHO05D002030 1.1e-06 58.5 201 34.3
Glyma.11G105400 Glycine max HOM05D001991 ORTHO05D002030 1.5e-06 58.2 271 29.9
Gohir.A04G122600 Gossypium hirsutum HOM05D001991 ORTHO05D002030 1.5e-06 58.2 197 33.5
Sed0010328 Sechium edule HOM05D001991 ORTHO05D002030 1.5e-06 58.2 224 29.0
Thecc.02G066300 Theobroma cacao HOM05D001991 ORTHO05D002030 2.5e-06 57.4 147 37.4
Gohir.D04G164600 Gossypium hirsutum HOM05D001991 ORTHO05D002030 3.3e-06 57.0 155 36.1
BcaC01g00250 Brassica carinata HOM05D001991 ORTHO05D002030 5.6e-06 56.2 261 28.7
Cfa005190 Carpinus fangiana HOM05D001991 ORTHO05D002030 5.6e-06 56.2 219 28.8
ClCG02G011610 Citrullus lanatus HOM05D001991 ORTHO05D002030 5.6e-06 56.2 231 27.7
CiPaw.05G077800 Carya illinoinensis HOM05D001991 ORTHO05D002030 7.3e-06 55.8 294 28.9
Gorai.008G034500 Gossypium raimondii HOM05D001991 ORTHO05D002030 7.3e-06 55.8 187 32.6
Nn5g29104 Nelumbo nucifera HOM05D001991 ORTHO05D002030 7.3e-06 55.8 217 29.0
PGR142G0784 Punica granatum HOM05D001991 ORTHO05D002030 9.5e-06 55.5 218 29.8


User provided reference genes

Program Settings