Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold108G30931 Striga asiatica HOM05D067379 ORTHO05D403721 9.0e-84 313.5 157 100.0
SGA_v2.0_scaffold205G41798 Striga asiatica HOM05D067379 ORTHO05D406444 1.0e-71 273.5 139 97.8
Cc07_g21030 Coffea canephora HOM05D001472 ORTHO05D002655 1.2e-08 63.9 67 55.2
MSTRG.13548 Avicennia marina HOM05D001472 ORTHO05D002655 2.8e-08 62.8 67 53.7
CSS0043872 Camellia sinensis var. sinensis HOM05D001472 ORTHO05D002655 2.8e-08 62.8 66 54.5
CSS0046527 Camellia sinensis var. sinensis HOM05D001472 ORTHO05D002655 4.7e-08 62.0 66 53.0
QL06p041099 Quercus lobata HOM05D001472 ORTHO05D002655 4.7e-08 62.0 103 41.7
SGA_v2.0_scaffold38G14974 Striga asiatica HOM05D001472 ORTHO05D002655 4.7e-08 62.0 66 54.5
CSS0013295 Camellia sinensis var. sinensis HOM05D001472 ORTHO05D002655 6.1e-08 61.6 66 53.0
CSS0005079 Camellia sinensis var. sinensis HOM05D001472 ORTHO05D002655 8.0e-08 61.2 66 53.0
Migut.E00363 Erythranthe guttata HOM05D001472 ORTHO05D002655 8.0e-08 61.2 67 52.2
QL11p005259 Quercus lobata HOM05D001472 ORTHO05D002655 8.0e-08 61.2 66 53.0
Solyc06g073330.4 Solanum lycopersicum HOM05D001472 ORTHO05D002655 1.0e-07 60.8 67 52.2
Sopen06g029700 Solanum pennellii HOM05D001472 ORTHO05D002655 1.0e-07 60.8 67 52.2
PGSC0003DMG400026909 Solanum tuberosum HOM05D001472 ORTHO05D002655 1.0e-07 60.8 67 52.2
SGA_v2.0_scaffold36G14548 Striga asiatica HOM05D001472 ORTHO05D002655 1.0e-07 60.8 66 53.0
QL06p041145 Quercus lobata HOM05D001472 ORTHO05D002655 1.4e-07 60.5 66 51.5
SalBow7G0701 Salvia bowleyana HOM05D001472 ORTHO05D002655 1.4e-07 60.5 67 50.7
Nitab4.5_0001111g0020 Nicotiana tabacum HOM05D001472 ORTHO05D002655 1.8e-07 60.1 67 52.2
Nitab4.5_0003132g0020 Nicotiana tabacum HOM05D001472 ORTHO05D002655 1.8e-07 60.1 67 52.2
Peaxi162Scf00375g00035 Petunia axillaris HOM05D001472 ORTHO05D002655 1.8e-07 60.1 67 52.2
Aqoxy6G00349 Aquilegia oxysepala HOM05D001472 ORTHO05D002655 2.3e-07 59.7 65 52.3
MSTRG.3730 Avicennia marina HOM05D001472 ORTHO05D002655 2.3e-07 59.7 67 50.7
CSS0006691 Camellia sinensis var. sinensis HOM05D001472 ORTHO05D002655 2.3e-07 59.7 66 51.5
CSS0039869 Camellia sinensis var. sinensis HOM05D001472 ORTHO05D002655 2.3e-07 59.7 66 51.5
Migut.L01040 Erythranthe guttata HOM05D001472 ORTHO05D002655 2.3e-07 59.7 67 50.7
Gohir.A02G091000 Gossypium hirsutum HOM05D001472 ORTHO05D002655 3.0e-07 59.3 65 52.3
Gohir.A10G142700 Gossypium hirsutum HOM05D001472 ORTHO05D002655 3.0e-07 59.3 65 52.3
Gohir.D02G109500 Gossypium hirsutum HOM05D001472 ORTHO05D002655 3.0e-07 59.3 65 52.3
Gohir.D10G124000 Gossypium hirsutum HOM05D001472 ORTHO05D002655 3.0e-07 59.3 65 52.3
Gorai.005G123900 Gossypium raimondii HOM05D001472 ORTHO05D002655 3.0e-07 59.3 65 52.3
Gorai.011G136900 Gossypium raimondii HOM05D001472 ORTHO05D002655 3.0e-07 59.3 65 52.3
unitig_27.g25182 Utricularia gibba HOM05D001472 ORTHO05D002655 3.0e-07 59.3 67 50.7
CAN.G65.176 Capsicum annuum HOM05D001472 ORTHO05D002655 4.0e-07 58.9 67 50.7
COL.COLO4_14564 Corchorus olitorius HOM05D001472 ORTHO05D002655 4.0e-07 58.9 65 50.8
Hma1.2p1_1086F.1_g255440 Hydrangea macrophylla HOM05D001472 ORTHO05D002655 4.0e-07 58.9 65 52.3
Atru.chr7.849 Acer truncatum HOM05D001472 ORTHO05D002655 5.2e-07 58.5 65 52.3
Ah.07g202260 Amaranthus hybridus HOM05D001472 ORTHO05D002655 5.2e-07 58.5 64 53.1
Duzib212G0443 Durio zibethinus HOM05D001472 ORTHO05D002655 5.2e-07 58.5 65 50.8
CiPaw.07G194000 Carya illinoinensis HOM05D001472 ORTHO05D002655 6.8e-07 58.2 65 50.8
PSO675G4629 Papaver somniferum HOM05D001472 ORTHO05D002655 6.8e-07 58.2 68 50.0
Thecc.04G166900 Theobroma cacao HOM05D001472 ORTHO05D002655 8.9e-07 57.8 65 50.8
Potri.018G090400 Populus trichocarpa HOM05D001472 ORTHO05D002655 1.2e-06 57.4 68 48.5
Sed0016659 Sechium edule HOM05D001472 ORTHO05D002655 1.2e-06 57.4 67 47.8
Cpa.g.sc95.40 Carica papaya HOM05D001472 ORTHO05D002655 1.5e-06 57.0 67 47.8
AUR62002331 Chenopodium quinoa HOM05D001472 ORTHO05D002655 1.5e-06 57.0 64 50.0
COL.COLO4_07536 Corchorus olitorius HOM05D001472 ORTHO05D002655 1.5e-06 57.0 65 50.8
Dinv19558 Davidia involucrata HOM05D001472 ORTHO05D002655 1.5e-06 57.0 65 50.8
Duzib151G0853 Durio zibethinus HOM05D001472 ORTHO05D002655 1.5e-06 57.0 65 50.8
PSO541G1999 Papaver somniferum HOM05D001472 ORTHO05D002655 1.5e-06 57.0 67 47.8
QL11p005215 Quercus lobata HOM05D001472 ORTHO05D002655 1.5e-06 57.0 65 49.2
Hund03172 Selenicereus undatus HOM05D001472 ORTHO05D002655 1.5e-06 57.0 65 50.8
Hund12017 Selenicereus undatus HOM05D001472 ORTHO05D002655 1.5e-06 57.0 65 50.8
THA.LOC104819974 Tarenaya hassleriana HOM05D001472 ORTHO05D002655 1.5e-06 57.0 64 50.0
TWI53G0276 Tripterygium wilfordii HOM05D001472 ORTHO05D002655 1.5e-06 57.0 65 50.8
TWI73G0132 Tripterygium wilfordii HOM05D001472 ORTHO05D002655 1.5e-06 57.0 65 50.8
TAR626G0028 Trochodendron aralioides HOM05D001472 ORTHO05D002655 1.5e-06 57.0 65 50.8
vmacro19871 Vaccinium macrocarpon HOM05D001472 ORTHO05D002655 1.5e-06 57.0 65 50.8
EL10Ac3g05985 Beta vulgaris HOM05D001472 ORTHO05D002655 2.0e-06 56.6 64 50.0
CSS0036924 Camellia sinensis var. sinensis HOM05D001472 ORTHO05D002655 2.0e-06 56.6 70 50.0
Haze_21945 Corylus avellana HOM05D001472 ORTHO05D002655 2.0e-06 56.6 65 49.2
Eucgr.C00141 Eucalyptus grandis HOM05D001472 ORTHO05D002655 2.0e-06 56.6 65 49.2
PGR044G0366 Punica granatum HOM05D001472 ORTHO05D002655 2.0e-06 56.6 64 51.6
Sabra18G0077800 Salix brachista HOM05D001472 ORTHO05D002655 2.0e-06 56.6 65 50.8
GSVIVG01031124001 Vitis vinifera HOM05D001472 ORTHO05D002655 2.0e-06 56.6 64 51.6
CSS0014405 Camellia sinensis var. sinensis HOM05D001472 ORTHO05D002655 2.6e-06 56.2 58 55.2
HanXRQChr07g0202161 Helianthus annuus HOM05D001472 ORTHO05D002655 2.6e-06 56.2 65 50.8
HanXRQChr09g0244411 Helianthus annuus HOM05D001472 ORTHO05D002655 2.6e-06 56.2 65 50.8
Prupe.1G082400 Prunus persica HOM05D001472 ORTHO05D002655 2.6e-06 56.2 65 50.8
QL06p041077 Quercus lobata HOM05D001472 ORTHO05D002655 2.6e-06 56.2 65 49.2
EL10Ac3g05987 Beta vulgaris HOM05D001472 ORTHO05D002655 3.4e-06 55.8 65 50.8
CDE10G1081 Ceratophyllum demersum HOM05D001472 ORTHO05D002655 3.4e-06 55.8 65 49.2
AUR62023857 Chenopodium quinoa HOM05D001472 ORTHO05D002655 3.4e-06 55.8 64 48.4
MD16G1255000 Malus domestica HOM05D001472 ORTHO05D002655 3.4e-06 55.8 66 50.0
PGR044G0930 Punica granatum HOM05D001472 ORTHO05D002655 3.4e-06 55.8 68 48.5
Actinidia25822 Actinidia chinensis HOM05D001472 ORTHO05D002655 4.4e-06 55.5 65 47.7
Lj3C269T1 Lonicera japonica HOM05D001472 ORTHO05D002655 4.4e-06 55.5 65 49.2
Lj3C272G7 Lonicera japonica HOM05D001472 ORTHO05D002655 4.4e-06 55.5 65 49.2
Nn4g24615 Nelumbo nucifera HOM05D001472 ORTHO05D002655 4.4e-06 55.5 62 51.6
TAR625G0316 Trochodendron aralioides HOM05D001472 ORTHO05D002655 4.4e-06 55.5 66 47.0
ClCG11G012010 Citrullus lanatus HOM05D001472 ORTHO05D002655 5.8e-06 55.1 67 46.3
MELO3C004005.2 Cucumis melo HOM05D001472 ORTHO05D002655 5.8e-06 55.1 67 46.3
Potri.006G166000 Populus trichocarpa HOM05D001472 ORTHO05D002655 5.8e-06 55.1 65 49.2
Sabra06G0127700 Salix brachista HOM05D001472 ORTHO05D002655 5.8e-06 55.1 65 49.2
Sed0000139 Sechium edule HOM05D001472 ORTHO05D002655 5.8e-06 55.1 67 46.3
GSVIVG01019319001 Vitis vinifera HOM05D001472 ORTHO05D002655 5.8e-06 55.1 63 50.8
CsaV3_2G008510 Cucumis sativus L. HOM05D001472 ORTHO05D002655 7.5e-06 54.7 67 46.3
Ah.13g072790 Amaranthus hybridus HOM05D001472 ORTHO05D002655 9.8e-06 54.3 67 47.8
Sc07g0006990 Simmondsia chinensis HOM05D001472 ORTHO05D002655 9.8e-06 54.3 65 49.2


User provided reference genes

Program Settings