Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold105G30482 Striga asiatica HOM05D023499 ORTHO05D029204 5.0e-132 474.6 260 100.0
SalBow6G5076 Salvia bowleyana HOM05D000184 ORTHO05D000032 7.3e-22 108.6 397 34.8
SalBow6G5514 Salvia bowleyana HOM05D000184 ORTHO05D000032 7.3e-22 108.6 397 34.8
TPR.G24148 Trifolium pratense HOM05D000184 ORTHO05D000032 8.0e-13 78.6 112 58.0
Medtr1g053835 Medicago truncatula HOM05D000184 ORTHO05D000032 8.9e-12 75.1 100 61.0
Ca_12088_v3 Cicer arietinum L. HOM05D000184 ORTHO05D000032 1.2e-11 74.7 112 58.9
Potri.016G047900 Populus trichocarpa HOM05D000184 ORTHO05D000032 9.8e-11 71.6 112 50.9
Oeu007773.1 Olea europaea HOM05D000184 ORTHO05D000032 2.2e-10 70.5 400 28.8
Oeu061764.1 Olea europaea HOM05D000184 ORTHO05D000032 2.2e-10 70.5 366 30.1
Migut.J01825 Erythranthe guttata HOM05D000184 ORTHO05D000032 2.9e-10 70.1 116 55.2
Potri.006G191000 Populus trichocarpa HOM05D000184 ORTHO05D000032 8.3e-10 68.6 155 47.1
Sabra06G0146300 Salix brachista HOM05D000184 ORTHO05D000032 8.3e-10 68.6 112 54.5
AUR62012048 Chenopodium quinoa HOM05D000184 ORTHO05D000032 1.1e-09 68.2 119 49.6
Sc13g0002190 Simmondsia chinensis HOM05D000184 ORTHO05D000032 1.1e-09 68.2 87 62.1
AUR62024316 Chenopodium quinoa HOM05D000184 ORTHO05D000032 1.4e-09 67.8 119 49.6
Migut.K00047 Erythranthe guttata HOM05D000184 ORTHO05D000032 3.2e-09 66.6 102 49.0
TWI74G1379 Tripterygium wilfordii HOM05D000184 ORTHO05D000032 3.2e-09 66.6 133 48.9
Thecc.05G169800 Theobroma cacao HOM05D000184 ORTHO05D000032 7.0e-09 65.5 132 50.0
Haze_19972 Corylus avellana HOM05D000184 ORTHO05D000032 1.6e-08 64.3 113 51.3
Hund24789 Selenicereus undatus HOM05D000184 ORTHO05D000032 2.1e-08 63.9 65 76.9
Cc06_g16130 Coffea canephora HOM05D000184 ORTHO05D000032 2.7e-08 63.5 107 52.3
Ah.04g152380 Amaranthus hybridus HOM05D000184 ORTHO05D000032 3.5e-08 63.2 119 52.9
Atru.chr8.1073 Acer truncatum HOM05D000184 ORTHO05D000032 6.0e-08 62.4 132 46.2
Nitab4.5_0000016g0360 Nicotiana tabacum HOM05D000184 ORTHO05D000032 6.0e-08 62.4 62 74.2
Nitab4.5_0011083g0020 Nicotiana tabacum HOM05D023499 ORTHO05D029204 1.0e-07 61.6 64 56.2
CARHR206380 Cardamine hirsuta HOM05D000184 ORTHO05D000032 1.7e-07 60.8 108 52.8
DCAR_017022 Daucus carota HOM05D023499 ORTHO05D029204 2.3e-07 60.5 211 33.2
DCAR_017023 Daucus carota HOM05D023499 ORTHO05D029204 2.3e-07 60.5 211 33.2
QL07p023341 Quercus lobata HOM05D000184 ORTHO05D000032 2.3e-07 60.5 82 59.8
Glyma.02G178100 Glycine max HOM05D000184 ORTHO05D000032 3.0e-07 60.1 115 52.2
arahy.Tifrunner.gnm1.ann1.MI35X1 Arachis hypogaea HOM05D000184 ORTHO05D000032 3.9e-07 59.7 67 74.6
Lj5g0027124 Lotus japonicus HOM05D000184 ORTHO05D000032 3.9e-07 59.7 111 54.1
Manes.09G033500 Manihot esculenta HOM05D000184 ORTHO05D000032 3.9e-07 59.7 132 45.5
Gohir.D09G123400 Gossypium hirsutum HOM05D000184 ORTHO05D000032 5.0e-07 59.3 67 68.7
Phvul.007G258700 Phaseolus vulgaris HOM05D000184 ORTHO05D000032 5.0e-07 59.3 93 57.0
Prupe.7G075300 Prunus persica HOM05D000184 ORTHO05D000032 5.0e-07 59.3 135 47.4
arahy.Tifrunner.gnm1.ann1.019HRU Arachis hypogaea HOM05D000184 ORTHO05D000032 6.6e-07 58.9 64 75.0
Hma1.2p1_0183F.1_g080780 Hydrangea macrophylla HOM05D000184 ORTHO05D000032 6.6e-07 58.9 133 48.9
MD14G1059400 Malus domestica HOM05D000184 ORTHO05D000032 6.6e-07 58.9 116 50.9
Atru.chr11.2690 Acer truncatum HOM05D000184 ORTHO05D000032 8.6e-07 58.5 102 43.1
BraA02t04893Z Brassica rapa HOM05D000184 ORTHO05D000032 8.6e-07 58.5 151 41.7
COL.COLO4_36147 Corchorus olitorius HOM05D000184 ORTHO05D000032 8.6e-07 58.5 281 31.0
Actinidia22023 Actinidia chinensis HOM05D000184 ORTHO05D000032 1.1e-06 58.2 68 64.7
Gorai.002G225400 Gossypium raimondii HOM05D000184 ORTHO05D000032 1.1e-06 58.2 94 54.3
BcaB01g06003 Brassica carinata HOM05D000184 ORTHO05D000032 1.5e-06 57.8 124 43.5
CSS0005408 Camellia sinensis var. sinensis HOM05D000184 ORTHO05D000032 1.5e-06 57.8 102 53.9
CSS0017966 Camellia sinensis var. sinensis HOM05D000184 ORTHO05D000032 1.5e-06 57.8 102 53.9
BcaB01g06021 Brassica carinata HOM05D000184 ORTHO05D000032 1.9e-06 57.4 117 47.9
C03p03330 Brassica napus HOM05D000184 ORTHO05D000032 1.9e-06 57.4 117 47.9
BolC3t12876H Brassica oleracea HOM05D000184 ORTHO05D000032 1.9e-06 57.4 117 47.9
Eucgr.A02444 Eucalyptus grandis HOM05D000184 ORTHO05D000032 1.9e-06 57.4 84 58.3
VMungo0720G1481 Vigna mungo HOM05D000184 ORTHO05D000032 1.9e-06 57.4 100 55.0
Ciclev10012014m.g Citrus clementina HOM05D000184 ORTHO05D000032 2.5e-06 57.0 100 54.0
Gohir.A09G127200 Gossypium hirsutum HOM05D000184 ORTHO05D000032 2.5e-06 57.0 67 67.2
Peaxi162Scf00258g00225 Petunia axillaris HOM05D000184 ORTHO05D000032 2.5e-06 57.0 102 39.2
TPR.G13233 Trifolium pratense HOM05D000184 ORTHO05D000032 2.5e-06 57.0 99 37.4
Glyma.09G113000 Glycine max HOM05D000184 ORTHO05D000032 3.3e-06 56.6 76 61.8
Lalb_Chr15g0078941 Lupinus albus HOM05D000184 ORTHO05D000032 3.3e-06 56.6 78 51.3
Sed0008968 Sechium edule HOM05D000184 ORTHO05D000032 3.3e-06 56.6 87 55.2
BolC2t06250H Brassica oleracea HOM05D000184 ORTHO05D000032 4.3e-06 56.2 108 49.1
Manes.08G045400 Manihot esculenta HOM05D000184 ORTHO05D000032 4.3e-06 56.2 112 38.4
Carub.0006s0569 Capsella rubella HOM05D000184 ORTHO05D000032 7.3e-06 55.5 115 50.4
Nitab4.5_0011083g0010 Nicotiana tabacum HOM05D000184 ORTHO05D000032 7.3e-06 55.5 112 47.3
Nitab4.5_0001538g0090 Nicotiana tabacum HOM05D000184 ORTHO05D000032 9.5e-06 55.1 107 50.5
Phvul.001G141600 Phaseolus vulgaris HOM05D000184 ORTHO05D000032 9.5e-06 55.1 100 46.0
Rhsim03G0008500 Rhododendron simsii HOM05D000184 ORTHO05D000032 9.5e-06 55.1 81 64.2


User provided reference genes

Program Settings