Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Organism Homologous gene familyOrthologous gene family E-value Bitscore Alignment Length Identity Percentage
MELO3C006218.2 Cucumis melo HOM05D004483 ORTHO05D005609 8.6e-185 650.2 335 100.0
CsaV3_3G009970 Cucumis sativus L. HOM05D004483 ORTHO05D005609 4.7e-183 644.4 335 99.1
ClCG05G002520 Citrullus lanatus HOM05D004483 ORTHO05D005609 6.8e-182 640.6 335 98.5
Sed0016930 Sechium edule HOM05D004483 ORTHO05D005609 1.6e-178 629.4 335 96.7
COL.COLO4_28409 Corchorus olitorius HOM05D004483 ORTHO05D005609 5.1e-169 597.8 328 92.1
Manes.08G157300 Manihot esculenta HOM05D004483 ORTHO05D005609 6.6e-169 597.4 325 92.6
CiPaw.12G019400 Carya illinoinensis HOM05D004483 ORTHO05D005609 1.5e-168 596.3 328 91.5
Eucgr.E01755 Eucalyptus grandis HOM05D004483 ORTHO05D005609 1.5e-168 596.3 327 91.4
Atru.chr13.1412 Acer truncatum HOM05D004483 ORTHO05D005609 5.6e-168 594.3 328 91.5
Ciclev10032078m.g Citrus clementina HOM05D004483 ORTHO05D005609 5.6e-168 594.3 328 91.2
Gohir.A08G221606 Gossypium hirsutum HOM05D004483 ORTHO05D005609 7.3e-168 594.0 331 91.2
Gohir.D08G238633 Gossypium hirsutum HOM05D004483 ORTHO05D005609 7.3e-168 594.0 331 91.2
PGR042G2637 Punica granatum HOM05D004483 ORTHO05D005609 7.3e-168 594.0 328 91.2
Duzib106G2041 Durio zibethinus HOM05D004483 ORTHO05D005609 1.3e-167 593.2 328 91.5
Thecc.05G233500 Theobroma cacao HOM05D004483 ORTHO05D005609 1.6e-167 592.8 328 91.8
Prupe.2G104100 Prunus persica HOM05D004483 ORTHO05D005609 6.2e-167 590.9 326 91.1
Sabra13G0062300 Salix brachista HOM05D004483 ORTHO05D005609 1.4e-166 589.7 326 91.1
Lalb_Chr07g0191411 Lupinus albus HOM05D004483 ORTHO05D005609 2.4e-166 589.0 328 90.5
Potri.013G072300 Populus trichocarpa HOM05D004483 ORTHO05D005609 5.3e-166 587.8 326 91.1
RcHm_v2.0_Chr1g0342701 Rosa chinensis HOM05D004483 ORTHO05D005609 5.3e-166 587.8 327 90.5
CANSAT78G0548 Cannabis sativa HOM05D004483 ORTHO05D005609 6.9e-166 587.4 330 91.5
TWI34G1657 Tripterygium wilfordii HOM05D004483 ORTHO05D005609 2.6e-165 585.5 328 90.2
TWI32G0950 Tripterygium wilfordii HOM05D004483 ORTHO05D005609 9.9e-165 583.6 328 90.2
Dinv43526 Davidia involucrata HOM05D004483 ORTHO05D005609 3.8e-164 581.6 327 89.3
VMungo0331G1733 Vigna mungo HOM05D004483 ORTHO05D005609 6.4e-164 580.9 328 89.9
FAN10G0570 Fragaria x ananassa HOM05D004483 ORTHO05D005609 1.4e-163 579.7 327 89.3
TAR636G0699 Trochodendron aralioides HOM05D004483 ORTHO05D005609 1.4e-163 579.7 327 88.7
Phvul.010G078100 Phaseolus vulgaris HOM05D004483 ORTHO05D005609 1.9e-163 579.3 328 89.6
FvH4_7g07660 Fragaria vesca HOM05D004483 ORTHO05D005609 3.2e-163 578.6 327 89.0
Glyma.01G118200 Glycine max HOM05D004483 ORTHO05D005609 3.2e-163 578.6 328 89.9
Lj3g0001477 Lotus japonicus HOM05D004483 ORTHO05D005609 4.2e-163 578.2 328 89.0
TAR636G1741 Trochodendron aralioides HOM05D004483 ORTHO05D005609 5.4e-163 577.8 327 88.7
FAN06G2294 Fragaria x ananassa HOM05D004483 ORTHO05D005609 9.3e-163 577.0 327 89.0
arahy.Tifrunner.gnm1.ann1.WXIR9M Arachis hypogaea HOM05D004483 ORTHO05D005609 1.2e-162 576.6 328 89.0
TPR.G40218 Trifolium pratense HOM05D004483 ORTHO05D005609 1.2e-162 576.6 328 88.7
Glyma.03G055200 Glycine max HOM05D004483 ORTHO05D005609 2.7e-162 575.5 325 90.5
Glyma.U006202 Glycine max HOM05D004483 ORTHO05D005609 2.7e-162 575.5 325 90.5
MD07G1080100 Malus domestica HOM05D004483 ORTHO05D005609 6.0e-162 574.3 335 89.0
Ca_04019_v3 Cicer arietinum L. HOM05D004483 ORTHO05D005609 1.0e-161 573.5 328 88.7
MSTRG.4986 Avicennia marina HOM05D004483 ORTHO05D005609 1.3e-161 573.2 329 85.7
Gorai.004G254100 Gossypium raimondii HOM05D004483 ORTHO05D005609 1.3e-161 573.2 369 81.8
Migut.N01676 Erythranthe guttata HOM05D004483 ORTHO05D005609 1.8e-161 572.8 327 86.9
Medtr5g046560 Medicago truncatula HOM05D004483 ORTHO05D005609 2.3e-161 572.4 328 87.8
AUR62033324 Chenopodium quinoa HOM05D004483 ORTHO05D005609 3.0e-161 572.0 327 86.9
AUR62033335 Chenopodium quinoa HOM05D004483 ORTHO05D005609 3.0e-161 572.0 327 86.9
Sc26g0000980 Simmondsia chinensis HOM05D004483 ORTHO05D005609 5.1e-161 571.2 329 86.9
AUR62004320 Chenopodium quinoa HOM05D004483 ORTHO05D005609 6.7e-161 570.9 327 86.5
SGA_v2.0_scaffold95G28749 Striga asiatica HOM05D004483 ORTHO05D005609 8.7e-161 570.5 327 86.2
CSS0029990 Camellia sinensis var. sinensis HOM05D004483 ORTHO05D005609 1.1e-160 570.1 326 88.0
Medtr6g049240 Medicago truncatula HOM05D004483 ORTHO05D005609 1.1e-160 570.1 328 87.2
EL10Ac1g00530 Beta vulgaris HOM05D004483 ORTHO05D005609 1.5e-160 569.7 326 86.8
Psat0s3493g0040 Pisum sativum HOM05D004483 ORTHO05D005609 1.5e-160 569.7 330 87.6
arahy.Tifrunner.gnm1.ann1.V3P46G Arachis hypogaea HOM05D004483 ORTHO05D005609 1.9e-160 569.3 334 87.4
Cc00_g12630 Coffea canephora HOM05D004483 ORTHO05D005609 1.9e-160 569.3 327 85.6
ECA248G0203 Erigeron canadensis HOM05D004483 ORTHO05D005609 2.5e-160 568.9 331 85.5
GSVIVG01019237001 Vitis vinifera HOM05D004483 ORTHO05D005609 1.3e-159 566.6 389 77.4
HanXRQChr01g0019801 Helianthus annuus HOM05D004483 ORTHO05D005609 1.6e-159 566.2 328 85.4
Nn7g36866 Nelumbo nucifera HOM05D004483 ORTHO05D005609 1.6e-159 566.2 328 87.8
Lsat_1_v5_gn_1_89980 Lactuca sativa HOM05D004483 ORTHO05D005609 4.8e-159 564.7 328 86.0
Aa31LG11G12020 Aethionema arabicum HOM05D004483 ORTHO05D005609 1.1e-158 563.5 328 86.0
Sopen01g032950 Solanum pennellii HOM05D004483 ORTHO05D005609 1.1e-158 563.5 327 85.0
PGSC0003DMG400001780 Solanum tuberosum HOM05D004483 ORTHO05D005609 1.8e-158 562.8 327 84.7
Cpa.g.sc73.74 Carica papaya HOM05D004483 ORTHO05D005609 2.4e-158 562.4 327 89.0
CARHR195560 Cardamine hirsuta HOM05D004483 ORTHO05D005609 3.1e-158 562.0 328 86.0
Rhsim07G0047000 Rhododendron simsii HOM05D004483 ORTHO05D005609 3.1e-158 562.0 328 84.8
Hund27300 Selenicereus undatus HOM05D004483 ORTHO05D005609 3.1e-158 562.0 327 85.3
Solyc01g081380.4 Solanum lycopersicum HOM05D004483 ORTHO05D005609 3.1e-158 562.0 327 85.0
CSS0005411 Camellia sinensis var. sinensis HOM05D004483 ORTHO05D005609 4.0e-158 561.6 328 85.7
CAN.G992.14 Capsicum annuum HOM05D004483 ORTHO05D005609 4.0e-158 561.6 327 84.7
Sp6g26600 Schrenkiella parvula HOM05D004483 ORTHO05D005609 4.0e-158 561.6 328 85.7
Rhsim07G0125200 Rhododendron simsii HOM05D004483 ORTHO05D005609 6.9e-158 560.8 335 83.9
Thhalv10014088m.g Eutrema salsugineum HOM05D004483 ORTHO05D005609 1.2e-157 560.1 328 85.4
Peaxi162Scf00907g00220 Petunia axillaris HOM05D004483 ORTHO05D005609 1.5e-157 559.7 328 85.1
HanXRQChr11g0343751 Helianthus annuus HOM05D004483 ORTHO05D005609 2.0e-157 559.3 329 84.8
Nitab4.5_0000792g0040 Nicotiana tabacum HOM05D004483 ORTHO05D005609 2.0e-157 559.3 325 85.2
Carub.0006s1586 Capsella rubella HOM05D004483 ORTHO05D005609 2.6e-157 558.9 328 85.4
AT5G17620 Arabidopsis thaliana HOM05D004483 ORTHO05D005609 3.4e-157 558.5 328 85.4
A02p04370 Brassica napus HOM05D004483 ORTHO05D005609 5.8e-157 557.8 328 84.8
C02p09220 Brassica napus HOM05D004483 ORTHO05D005609 5.8e-157 557.8 328 84.8
BolC2t06830H Brassica oleracea HOM05D004483 ORTHO05D005609 5.8e-157 557.8 328 84.8
BraA02t05401Z Brassica rapa HOM05D004483 ORTHO05D005609 5.8e-157 557.8 328 84.8
Potri.019G044100 Populus trichocarpa HOM05D004483 ORTHO05D005609 1.3e-156 556.6 326 87.7
AL6G28710 Arabidopsis lyrata HOM05D004483 ORTHO05D005609 2.2e-156 555.8 328 84.8
Nitab4.5_0012495g0010 Nicotiana tabacum HOM05D004483 ORTHO05D005609 2.2e-156 555.8 328 84.5
vmacro13592 Vaccinium macrocarpon HOM05D004483 ORTHO05D005609 4.9e-156 554.7 355 79.2
FvH4_3g28610 Fragaria vesca HOM05D004483 ORTHO05D005609 3.2e-155 552.0 327 85.0
QL04p053109 Quercus lobata HOM05D004483 ORTHO05D005609 9.3e-155 550.4 451 67.4
PSO170G6334 Papaver somniferum HOM05D004483 ORTHO05D005609 1.0e-153 547.0 330 83.0
PSO782G4616 Papaver somniferum HOM05D004483 ORTHO05D005609 3.0e-153 545.4 330 82.7
FAN25G2123 Fragaria x ananassa HOM05D004483 ORTHO05D005609 1.9e-152 542.7 327 83.8
FAN21G3783 Fragaria x ananassa HOM05D004483 ORTHO05D005609 3.3e-152 542.0 327 83.5
THA.LOC104821152 Tarenaya hassleriana HOM05D004483 ORTHO05D005609 1.3e-151 540.0 314 85.7
BcaB08g36758 Brassica carinata HOM05D004483 ORTHO05D005609 1.6e-151 539.7 328 82.3
TAR636G1618 Trochodendron aralioides HOM05D004483 ORTHO05D005609 4.8e-151 538.1 304 88.8
THA.LOC104802894 Tarenaya hassleriana HOM05D004483 ORTHO05D005609 8.1e-151 537.3 325 82.8
BcaC03g13531 Brassica carinata HOM05D004483 ORTHO05D005609 1.9e-147 526.2 329 81.8
CDE08G1003 Ceratophyllum demersum HOM05D004483 ORTHO05D005609 9.3e-147 523.9 328 80.5
TPR.G9231 Trifolium pratense HOM05D004483 ORTHO05D005609 1.6e-146 523.1 328 81.7
Cfa001833 Carpinus fangiana HOM05D004483 ORTHO05D005609 2.1e-146 522.7 328 82.0
MD02G1233500 Malus domestica HOM05D004483 ORTHO05D005609 3.0e-145 518.8 335 82.4
SalBow4G2429 Salvia bowleyana HOM05D004483 ORTHO05D005609 5.1e-145 518.1 300 85.0
ATR0736G160 Amborella trichopoda HOM05D004483 ORTHO05D005609 2.4e-142 509.2 332 77.7
Medtr4g017150 Medicago truncatula HOM05D004483 ORTHO05D005609 2.5e-139 499.2 328 80.5
Os01g0869500 Oryza sativa ssp. japonica HOM05D004483 ORTHO05D005609 2.5e-139 499.2 327 75.8
CSS0030130 Camellia sinensis var. sinensis HOM05D004483 ORTHO05D005609 6.1e-138 494.6 296 85.5
FAN25G2538 Fragaria x ananassa HOM05D004483 ORTHO05D005609 1.9e-136 489.6 373 70.8
SEGI_12813 Sequoiadendron giganteum HOM05D004483 ORTHO05D005609 2.5e-136 489.2 336 73.5
Zm00001eb172120 Zea mays HOM05D004483 ORTHO05D005609 7.4e-136 487.6 326 75.2
Actinidia05827 Actinidia chinensis HOM05D004483 ORTHO05D005609 2.4e-134 482.6 326 77.0
Lj7A559T94 Lonicera japonica HOM05D004483 ORTHO05D005609 2.7e-130 469.2 332 75.0
DCAR_025006 Daucus carota HOM05D004483 ORTHO05D005609 4.6e-130 468.4 329 74.2
MBI07_g00286_MAGBIO Magnolia biondii HOM05D004483 ORTHO05D005609 7.9e-130 467.6 279 83.9
unitig_61.g26200 Utricularia gibba HOM05D004483 ORTHO05D005609 1.7e-116 423.3 323 69.0
TPR.G14295 Trifolium pratense HOM05D004483 ORTHO05D005609 8.5e-116 421.0 234 89.7
Pp3c21_22490 Physcomitrium patens HOM05D004483 ORTHO05D005609 1.5e-112 410.2 324 61.1
SMO266G0007 Selaginella moellendorffii HOM05D004483 ORTHO05D005609 1.1e-110 404.1 318 63.5
CSS0038619 Camellia sinensis var. sinensis HOM05D004483 ORTHO05D005609 2.9e-108 396.0 233 84.1
Mapoly0042s0051 Marchantia polymorpha HOM05D004483 ORTHO05D005609 1.5e-107 393.7 324 63.3
BraA10t44239Z Brassica rapa HOM05D004483 ORTHO05D005609 7.5e-104 381.3 320 64.7
A10p21790 Brassica napus HOM05D004483 ORTHO05D005609 9.8e-104 380.9 273 72.5
Cfa003690 Carpinus fangiana HOM05D004483 ORTHO05D005609 2.3e-97 359.8 328 63.4
MD02G1233800 Malus domestica HOM05D004483 ORTHO05D005609 3.7e-95 352.4 197 90.9
BcaC04g18774 Brassica carinata HOM05D004483 ORTHO05D005609 2.7e-93 346.3 334 60.5
HPP92_018030 Vanilla planifolia HOM05D004483 ORTHO05D005609 7.8e-93 344.7 234 72.6
Peaxi162Scf00040g00103 Petunia axillaris HOM05D004483 ORTHO05D005609 1.2e-90 337.4 224 76.3
Haze_16727 Corylus avellana HOM05D004483 ORTHO05D005609 6.8e-89 331.6 220 80.5
Haze_25407 Corylus avellana HOM05D004483 ORTHO05D005609 3.7e-87 325.9 220 78.6
Haze_15797 Corylus avellana HOM05D004483 ORTHO05D005609 1.2e-82 310.8 220 76.8
Oeu041518.1 Olea europaea HOM05D004483 ORTHO05D005609 1.1e-81 307.8 167 89.8
CBR_g5742 Chara braunii HOM05D004483 ORTHO05D005609 2.3e-76 290.0 333 45.3
Duzib106G1834 Durio zibethinus HOM05D004483 ORTHO05D005609 1.8e-73 280.4 161 88.2
C09p59550 Brassica napus HOM05D004483 ORTHO05D005609 2.2e-71 273.5 328 52.4
Migut.O00822 Erythranthe guttata HOM05D004483 ORTHO05D005609 8.3e-71 271.6 161 82.6
Actinidia31738 Actinidia chinensis HOM05D004483 ORTHO05D005609 1.4e-65 254.2 267 54.7
Haze_16728 Corylus avellana HOM05D004483 ORTHO05D005609 4.9e-63 245.7 132 90.9
Haze_15798 Corylus avellana HOM05D004483 ORTHO05D005609 8.1e-58 228.4 130 87.7
BolC9t58793H Brassica oleracea HOM05D004483 ORTHO05D005609 1.1e-46 191.4 161 65.2
SHI14405 Sapria himalayana HOM05D004483 ORTHO05D005609 2.5e-43 180.3 150 63.3
FAN16G0129 Fragaria x ananassa HOM05D004483 ORTHO05D005609 3.3e-43 179.9 99 86.9
MD09G1234100 Malus domestica HOM05D004483 ORTHO05D005609 8.4e-39 165.2 103 81.6
SHI14408 Sapria himalayana HOM05D004483 ORTHO05D005609 4.2e-38 162.9 181 53.6
MD02G1235300 Malus domestica HOM05D004483 ORTHO05D005609 7.9e-37 158.7 95 87.4
RcHm_v2.0_Chr2g0157591 Rosa chinensis HOM05D004483 ORTHO05D005609 1.9e-35 154.1 87 85.1
TWI32G0329 Tripterygium wilfordii HOM05D004483 ORTHO05D005609 1.0e-31 141.7 77 90.9
arahy.Tifrunner.gnm1.ann1.H3K4HU Arachis hypogaea HOM05D004483 ORTHO05D005609 8.4e-31 138.7 87 85.1
Peaxi162Scf00040g00102 Petunia axillaris HOM05D004483 ORTHO05D005609 1.1e-30 138.3 88 75.0
MD02G1233900 Malus domestica HOM05D004483 ORTHO05D005609 2.1e-29 134.0 69 89.9
arahy.Tifrunner.gnm1.ann1.RIX38N Arachis hypogaea HOM05D004483 ORTHO05D005609 3.5e-29 133.3 80 78.8
Medtr5g046460 Medicago truncatula HOM05D004483 ORTHO05D005609 1.8e-28 131.0 74 83.8
RcHm_v2.0_Chr3g0469881 Rosa chinensis HOM05D004483 ORTHO05D005609 3.7e-26 123.2 72 81.9
CSS0040869 Camellia sinensis var. sinensis HOM05D004483 ORTHO05D005609 3.4e-24 116.7 75 74.7
arahy.Tifrunner.gnm1.ann1.AX0BTM Arachis hypogaea HOM05D004483 ORTHO05D005609 3.8e-23 113.2 72 79.2
MD02G1234000 Malus domestica HOM05D004483 ORTHO05D005609 5.0e-23 112.8 70 85.7
RcHm_v2.0_Chr1g0342751 Rosa chinensis HOM05D004483 ORTHO05D005609 1.2e-21 108.2 69 78.3
Haze_25412 Corylus avellana HOM05D004483 ORTHO05D005609 5.1e-20 102.8 62 83.9
arahy.Tifrunner.gnm1.ann1.LP3G76 Arachis hypogaea HOM05D004483 ORTHO05D083770 1.1e-09 68.6 85 48.2
BcaC03g13840 Brassica carinata HOM05D007309 ORTHO05D040036 3.4e-08 63.5 34 85.3
CSS0035749 Camellia sinensis var. sinensis HOM05D004483 ORTHO05D111617 3.8e-07 60.1 48 66.7

Acer truncatum (1 genes)
Actinidia chinensis (2 genes)
Aethionema arabicum (1 genes)
Amaranthus hybridus (0 genes)
Amborella trichopoda (1 genes)
Anthoceros agrestis (0 genes)
Aquilegia oxysepala (0 genes)
Arabidopsis lyrata (1 genes)
Arabidopsis thaliana (1 genes)
Arachis hypogaea (6 genes)
Avicennia marina (1 genes)
Beta vulgaris (1 genes)
Brassica carinata (4 genes)
Brassica napus (4 genes)
Brassica oleracea (2 genes)
Brassica rapa (2 genes)
Camellia sinensis var. sinensis (6 genes)
Cannabis sativa (1 genes)
Capsella rubella (1 genes)
Capsicum annuum (1 genes)
Cardamine hirsuta (1 genes)
Carica papaya (1 genes)
Carpinus fangiana (2 genes)
Carya illinoinensis (1 genes)
Ceratophyllum demersum (1 genes)
Chara braunii (1 genes)
Chenopodium quinoa (3 genes)
Chlamydomonas reinhardtii (0 genes)
Cicer arietinum L. (1 genes)
Citrullus lanatus (1 genes)
Citrus clementina (1 genes)
Coffea canephora (1 genes)
Corchorus olitorius (1 genes)
Corylus avellana (6 genes)
Cucumis melo (1 genes)
Cucumis sativus L. (1 genes)
Daucus carota (1 genes)
Davidia involucrata (1 genes)
Durio zibethinus (2 genes)
Erigeron canadensis (1 genes)
Erythranthe guttata (2 genes)
Eucalyptus grandis (1 genes)
Eutrema salsugineum (1 genes)
Fragaria vesca (2 genes)
Fragaria x ananassa (6 genes)
Glycine max (3 genes)
Gossypium hirsutum (2 genes)
Gossypium raimondii (1 genes)
Helianthus annuus (2 genes)
Hydrangea macrophylla (0 genes)
Lactuca sativa (1 genes)
Lonicera japonica (1 genes)
Lotus japonicus (1 genes)
Lupinus albus (1 genes)
Magnolia biondii (1 genes)
Malus domestica (7 genes)
Manihot esculenta (1 genes)
Marchantia polymorpha (1 genes)
Medicago truncatula (4 genes)
Micromonas commoda (0 genes)
Nelumbo nucifera (1 genes)
Nicotiana tabacum (2 genes)
Olea europaea (1 genes)
Oryza sativa ssp. japonica (1 genes)
Papaver somniferum (2 genes)
Petunia axillaris (3 genes)
Phaseolus vulgaris (1 genes)
Physcomitrium patens (1 genes)
Pisum sativum (1 genes)
Populus trichocarpa (2 genes)
Prasinoderma coloniale (0 genes)
Prunus persica (1 genes)
Punica granatum (1 genes)
Quercus lobata (1 genes)
Rhododendron simsii (2 genes)
Rosa chinensis (4 genes)
Salix brachista (1 genes)
Salvia bowleyana (1 genes)
Sapria himalayana (2 genes)
Schrenkiella parvula (1 genes)
Sechium edule (1 genes)
Selaginella moellendorffii (1 genes)
Selenicereus undatus (1 genes)
Sequoiadendron giganteum (1 genes)
Simmondsia chinensis (1 genes)
Solanum lycopersicum (1 genes)
Solanum pennellii (1 genes)
Solanum tuberosum (1 genes)
Striga asiatica (1 genes)
Tarenaya hassleriana (2 genes)
Theobroma cacao (1 genes)
Trifolium pratense (3 genes)
Tripterygium wilfordii (3 genes)
Trochodendron aralioides (3 genes)
Utricularia gibba (1 genes)
Vaccinium macrocarpon (1 genes)
Vanilla planifolia (1 genes)
Vigna mungo (1 genes)
Vitis vinifera (1 genes)
Zea mays (1 genes)

Program Settings