Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HanXRQChr11g0333681 Helianthus annuus HOM05D004645 ORTHO05D005693 8.2e-170 600.5 352 100.0
HanXRQChr14g0434641 Helianthus annuus HOM05D004645 ORTHO05D005693 1.3e-122 443.7 300 83.0
ECA238G1292 Erigeron canadensis HOM05D004645 ORTHO05D005693 8.7e-111 404.4 237 90.3
Lsat_1_v5_gn_8_3080 Lactuca sativa HOM05D004645 ORTHO05D005693 3.9e-103 379.0 298 72.1
Potri.013G076800 Populus trichocarpa HOM05D004645 ORTHO05D005693 3.2e-97 359.4 309 68.0
Manes.09G130100 Manihot esculenta HOM05D004645 ORTHO05D005693 1.8e-95 353.6 326 65.6
Dinv01810 Davidia involucrata HOM05D004645 ORTHO05D005693 9.6e-94 347.8 338 62.7
Lj1g0014871 Lotus japonicus HOM05D004645 ORTHO05D005693 1.6e-93 347.1 323 64.7
CSS0046309 Camellia sinensis var. sinensis HOM05D004645 ORTHO05D005693 6.2e-93 345.1 326 63.5
CiPaw.06G036400 Carya illinoinensis HOM05D004645 ORTHO05D005693 1.1e-92 344.4 331 62.5
CiPaw.05G212200 Carya illinoinensis HOM05D004645 ORTHO05D005693 2.4e-92 343.2 324 63.6
Ciclev10031859m.g Citrus clementina HOM05D004645 ORTHO05D005693 4.0e-92 342.4 328 62.8
Gohir.A02G114700 Gossypium hirsutum HOM05D004645 ORTHO05D005693 4.0e-92 342.4 350 59.7
MD01G1239600 Malus domestica HOM05D004645 ORTHO05D005693 4.0e-92 342.4 320 65.0
Solyc03g097300.4 Solanum lycopersicum HOM05D004645 ORTHO05D005693 4.0e-92 342.4 328 61.3
Sopen03g028070 Solanum pennellii HOM05D004645 ORTHO05D005693 4.0e-92 342.4 328 61.3
Manes.08G160200 Manihot esculenta HOM05D004645 ORTHO05D005693 5.3e-92 342.0 323 64.4
Nitab4.5_0009278g0030 Nicotiana tabacum HOM05D004645 ORTHO05D005693 5.3e-92 342.0 331 60.7
Thecc.05G223300 Theobroma cacao HOM05D004645 ORTHO05D005693 5.3e-92 342.0 332 62.3
BcaB08g36765 Brassica carinata HOM05D004645 ORTHO05D005693 6.9e-92 341.7 324 62.0
Gohir.D03G055700 Gossypium hirsutum HOM05D004645 ORTHO05D005693 1.2e-91 340.9 351 59.3
TWI60G0474 Tripterygium wilfordii HOM05D004645 ORTHO05D005693 1.2e-91 340.9 333 61.0
GSVIVG01024286001 Vitis vinifera HOM05D004645 ORTHO05D005693 1.2e-91 340.9 251 74.9
Gorai.003G058500 Gossypium raimondii HOM05D004645 ORTHO05D005693 2.6e-91 339.7 354 58.8
A10p21880 Brassica napus HOM05D004645 ORTHO05D005693 3.4e-91 339.3 325 61.5
BolC9t58802H Brassica oleracea HOM05D004645 ORTHO05D005693 3.4e-91 339.3 321 62.9
BraA10t44247Z Brassica rapa HOM05D004645 ORTHO05D005693 3.4e-91 339.3 325 61.5
PGSC0003DMG400026490 Solanum tuberosum HOM05D004645 ORTHO05D005693 5.8e-91 338.6 331 60.1
BcaC04g18782 Brassica carinata HOM05D004645 ORTHO05D005693 1.3e-90 337.4 322 62.4
C09p59630 Brassica napus HOM05D004645 ORTHO05D005693 1.7e-90 337.0 321 62.6
MSTRG.26920 Avicennia marina HOM05D004645 ORTHO05D005693 2.9e-90 336.3 322 61.8
THA.LOC104820831 Tarenaya hassleriana HOM05D004645 ORTHO05D005693 2.9e-90 336.3 326 62.6
THA.LOC104802906 Tarenaya hassleriana HOM05D004645 ORTHO05D005693 3.8e-90 335.9 321 62.9
Hund09812 Selenicereus undatus HOM05D004645 ORTHO05D005693 4.9e-90 335.5 295 66.4
Hma1.2p1_0419F.1_g149550 Hydrangea macrophylla HOM05D004645 ORTHO05D005693 6.5e-90 335.1 248 74.6
Cc02_g00050 Coffea canephora HOM05D004645 ORTHO05D005693 8.4e-90 334.7 329 61.4
AT5G17510 Arabidopsis thaliana HOM05D004645 ORTHO05D005693 1.4e-89 334.0 322 60.6
VMungo1127G1262 Vigna mungo HOM05D004645 ORTHO05D005693 1.4e-89 334.0 334 61.1
Actinidia33801 Actinidia chinensis HOM05D004645 ORTHO05D005693 1.9e-89 333.6 335 60.6
CSS0029852 Camellia sinensis var. sinensis HOM05D004645 ORTHO05D005693 3.2e-89 332.8 334 61.1
CAN.G732.33 Capsicum annuum HOM05D004645 ORTHO05D005693 5.5e-89 332.0 330 59.7
CANSAT21G0324 Cannabis sativa HOM05D004645 ORTHO05D005693 9.3e-89 331.3 327 61.2
Glyma.09G223000 Glycine max HOM05D004645 ORTHO05D005693 9.3e-89 331.3 336 61.0
Duzib177G0889 Durio zibethinus HOM05D004645 ORTHO05D005693 1.2e-88 330.9 351 58.1
Sp6g26710 Schrenkiella parvula HOM05D004645 ORTHO05D005693 1.2e-88 330.9 332 60.5
Glyma.12G014000 Glycine max HOM05D004645 ORTHO05D005693 1.6e-88 330.5 336 60.4
Gohir.A13G158000 Gossypium hirsutum HOM05D004645 ORTHO05D005693 1.6e-88 330.5 323 62.2
RcHm_v2.0_Chr1g0384691 Rosa chinensis HOM05D004645 ORTHO05D005693 4.6e-88 328.9 327 61.2
Medtr0004s0240 Medicago truncatula HOM05D004645 ORTHO05D005693 7.9e-88 328.2 312 63.1
Atru.chr12.1851 Acer truncatum HOM05D004645 ORTHO05D005693 1.3e-87 327.4 323 60.7
FAN10G3994 Fragaria x ananassa HOM05D004645 ORTHO05D005693 1.3e-87 327.4 320 62.5
Phvul.011G016900 Phaseolus vulgaris HOM05D004645 ORTHO05D005693 1.3e-87 327.4 329 60.5
AL6G28600 Arabidopsis lyrata HOM05D004645 ORTHO05D005693 2.3e-87 326.6 320 60.3
Gohir.D13G162500 Gossypium hirsutum HOM05D004645 ORTHO05D005693 3.0e-87 326.2 317 61.8
Prupe.2G329500 Prunus persica HOM05D004645 ORTHO05D005693 3.0e-87 326.2 334 59.9
Carub.0006s1574 Capsella rubella HOM05D004645 ORTHO05D005693 1.1e-86 324.3 326 59.5
Migut.L00703 Erythranthe guttata HOM05D004645 ORTHO05D005693 1.5e-86 323.9 343 58.0
Peaxi162Scf00516g00425 Petunia axillaris HOM05D004645 ORTHO05D005693 2.5e-86 323.2 327 59.6
Potri.019G042800 Populus trichocarpa HOM05D004645 ORTHO05D005693 2.5e-86 323.2 368 55.7
FvH4_7g34300 Fragaria vesca HOM05D004645 ORTHO05D005693 7.4e-86 321.6 332 59.9
Aa31LG11G12160 Aethionema arabicum HOM05D004645 ORTHO05D005693 9.6e-86 321.2 326 59.5
Oeu028988.1 Olea europaea HOM05D004645 ORTHO05D005693 9.6e-86 321.2 327 59.9
TAR629G2315 Trochodendron aralioides HOM05D004645 ORTHO05D005693 1.6e-85 320.5 329 60.2
HanXRQChr05g0156891 Helianthus annuus HOM05D004645 ORTHO05D005693 3.7e-85 319.3 231 77.1
Nitab4.5_0000021g0850 Nicotiana tabacum HOM05D004645 ORTHO05D005693 4.8e-85 318.9 255 68.6
Lj3C883G6 Lonicera japonica HOM05D000507 ORTHO05D000416 8.2e-85 318.2 260 70.8
PGR119G0624 Punica granatum HOM05D004645 ORTHO05D005693 8.2e-85 318.2 327 59.6
Duzib128G1942 Durio zibethinus HOM05D004645 ORTHO05D005693 2.6e-83 313.2 338 57.4
Lj5g0009502 Lotus japonicus HOM05D004645 ORTHO05D005693 1.7e-82 310.5 318 60.4
Thhalv10013879m.g Eutrema salsugineum HOM05D004645 ORTHO05D005693 2.9e-82 309.7 320 59.4
arahy.Tifrunner.gnm1.ann1.3IB4NC Arachis hypogaea HOM05D004645 ORTHO05D005693 3.8e-82 309.3 349 56.7
arahy.Tifrunner.gnm1.ann1.7F5N7U Arachis hypogaea HOM05D004645 ORTHO05D005693 3.8e-82 309.3 349 56.7
Gorai.013G184600 Gossypium raimondii HOM05D004645 ORTHO05D005693 1.4e-81 307.4 319 59.6
TAR633G2534 Trochodendron aralioides HOM05D004645 ORTHO05D005693 3.2e-81 306.2 245 70.6
TWI32G1082 Tripterygium wilfordii HOM05D004645 ORTHO05D005693 1.6e-80 303.9 340 55.9
Lalb_Chr03g0037841 Lupinus albus HOM05D004645 ORTHO05D005693 2.1e-80 303.5 312 58.3
FAN03G2055 Fragaria x ananassa HOM05D004645 ORTHO05D005693 4.6e-80 302.4 348 55.7
CARHR195680 Cardamine hirsuta HOM05D004645 ORTHO05D005693 2.3e-79 300.1 321 57.6
Oeu027899.1 Olea europaea HOM05D004645 ORTHO05D005693 3.0e-79 299.7 320 57.2
Lalb_Chr19g0140101 Lupinus albus HOM05D004645 ORTHO05D005693 3.9e-79 299.3 313 57.8
PSO063G6220 Papaver somniferum HOM05D004645 ORTHO05D005693 3.9e-79 299.3 330 57.3
Sed0013778 Sechium edule HOM05D004645 ORTHO05D005693 5.1e-79 298.9 323 59.4
PSO782G2658 Papaver somniferum HOM05D004645 ORTHO05D005693 8.7e-79 298.1 328 57.3
ECA233G1188 Erigeron canadensis HOM05D004645 ORTHO05D005693 9.7e-78 294.7 229 72.1
Sabra19G0053400 Salix brachista HOM05D004645 ORTHO05D005693 9.7e-78 294.7 287 60.3
unitig_92.g28227 Utricularia gibba HOM05D004645 ORTHO05D005693 4.8e-77 292.4 235 68.1
MELO3C014340.2 Cucumis melo HOM05D004645 ORTHO05D005693 2.4e-76 290.0 323 57.0
ClCG09G013170 Citrullus lanatus HOM05D004645 ORTHO05D005693 6.9e-76 288.5 327 56.9
Thhalv10020936m.g Eutrema salsugineum HOM05D004645 ORTHO05D005693 6.9e-76 288.5 342 53.5
SGA_v2.0_scaffold18G08211 Striga asiatica HOM05D004645 ORTHO05D005693 2.0e-75 287.0 316 56.3
SHI15009 Sapria himalayana HOM05D004645 ORTHO05D005693 2.6e-75 286.6 312 58.0
Os12g0465700 Oryza sativa ssp. japonica HOM05D004645 ORTHO05D005693 4.5e-75 285.8 308 56.5
Aqoxy5G00549 Aquilegia oxysepala HOM05D004645 ORTHO05D005693 1.0e-74 284.6 335 54.0
CsaV3_6G036830 Cucumis sativus L. HOM05D004645 ORTHO05D005693 1.3e-74 284.3 247 65.6
AL3G13140 Arabidopsis lyrata HOM05D004645 ORTHO05D005693 5.5e-73 278.9 311 55.6
TPR.G9835 Trifolium pratense HOM05D004645 ORTHO05D005693 9.4e-73 278.1 318 56.3
DCAR_014580 Daucus carota HOM05D004645 ORTHO05D005693 3.9e-71 272.7 317 55.5
CDE04G1041 Ceratophyllum demersum HOM05D004645 ORTHO05D005693 5.1e-71 272.3 319 55.8
Haze_00365 Corylus avellana HOM05D004645 ORTHO05D005693 1.5e-70 270.8 212 73.1
QL09p020526 Quercus lobata HOM05D004645 ORTHO05D005693 2.5e-70 270.0 210 72.9
COL.COLO4_15124 Corchorus olitorius HOM05D004645 ORTHO05D005693 9.7e-70 268.1 219 70.8
EL10Ac3g05041 Beta vulgaris HOM05D004645 ORTHO05D005693 1.7e-69 267.3 399 46.6
AUR62028214 Chenopodium quinoa HOM05D004645 ORTHO05D005693 1.8e-68 263.8 288 55.2
Sp3g02460 Schrenkiella parvula HOM05D004645 ORTHO05D005693 2.4e-68 263.5 325 51.4
ATR0582G008 Amborella trichopoda HOM05D004645 ORTHO05D005693 7.7e-67 258.5 304 53.3
Carub.0003s0260 Capsella rubella HOM05D004645 ORTHO05D005693 1.3e-66 257.7 331 50.2
DCAR_010525 Daucus carota HOM05D004645 ORTHO05D005693 2.9e-66 256.5 230 67.0
vmacro06368 Vaccinium macrocarpon HOM05D004645 ORTHO05D005693 6.5e-66 255.4 227 66.1
AT3G03460 Arabidopsis thaliana HOM05D004645 ORTHO05D005693 1.6e-64 250.8 320 51.9
AUR62002096 Chenopodium quinoa HOM05D004645 ORTHO05D005693 3.6e-64 249.6 263 55.9
BNapus_Darmor_BZH_scaffold_162p00170 Brassica napus HOM05D004645 ORTHO05D005693 6.1e-64 248.8 315 52.7
BolC1t05829H Brassica oleracea HOM05D004645 ORTHO05D005693 6.1e-64 248.8 315 52.7
Aa31LG5G13980 Aethionema arabicum HOM05D000507 ORTHO05D000416 1.5e-62 244.2 249 56.6
Ca_19601_v3 Cicer arietinum L. HOM05D004645 ORTHO05D005693 2.2e-61 240.4 221 65.6
Sc08g0005180 Simmondsia chinensis HOM05D004645 ORTHO05D005693 3.7e-61 239.6 212 67.5
Ah.04g156130 Amaranthus hybridus HOM05D004645 ORTHO05D005693 2.4e-60 236.9 334 48.2
A06p26400 Brassica napus HOM05D004645 ORTHO05D005693 2.0e-59 233.8 243 58.8
BNapus_Darmor_BZH_scaffold_78p00150 Brassica napus HOM05D004645 ORTHO05D005693 2.0e-59 233.8 243 58.8
Rhsim03G0224700 Rhododendron simsii HOM05D004645 ORTHO05D005693 3.5e-59 233.0 335 49.9
BraA01t04578Z Brassica rapa HOM05D004645 ORTHO05D005693 4.5e-59 232.6 243 58.8
HPP92_006448 Vanilla planifolia HOM05D004645 ORTHO05D005693 3.8e-58 229.6 323 50.5
BcaC09g47748 Brassica carinata HOM05D004645 ORTHO05D005693 2.5e-57 226.9 307 50.8
Lj3g0007707 Lotus japonicus HOM05D004645 ORTHO05D005693 2.3e-55 220.3 206 65.5
Cfa016080 Carpinus fangiana HOM05D004645 ORTHO05D005693 4.0e-55 219.5 184 70.1
SEGI_39287 Sequoiadendron giganteum HOM05D004645 ORTHO05D005693 5.2e-47 192.6 267 46.4
HPP92_027983 Vanilla planifolia HOM05D004645 ORTHO05D005693 1.2e-46 191.4 215 54.0
Psat7g154680 Pisum sativum HOM05D004645 ORTHO05D005693 6.1e-40 169.1 135 68.1
CARHR077490 Cardamine hirsuta HOM05D004645 ORTHO05D005693 5.4e-36 156.0 218 48.6
FAN01G0394 Fragaria x ananassa HOM05D004645 ORTHO05D005693 1.6e-35 154.5 102 78.4
TAR636G0353 Trochodendron aralioides HOM05D004645 ORTHO05D005693 4.5e-35 152.9 136 67.6
Pp3c11_2710 Physcomitrium patens HOM05D004645 ORTHO05D005693 1.7e-26 124.4 173 42.2
Mapoly0012s0180 Marchantia polymorpha HOM05D004645 ORTHO05D005693 3.0e-26 123.6 151 43.0
HPP92_028759 Vanilla planifolia HOM05D004645 ORTHO05D005693 1.9e-25 120.9 204 45.1
AagrBONN_evm.TU.Sc2ySwM_228.1766 Anthoceros agrestis HOM05D004645 ORTHO05D005693 4.3e-25 119.8 153 43.8
Zm00001eb421230 Zea mays HOM05D004645 ORTHO05D005693 1.9e-20 104.4 155 39.4
Os04g0393100 Oryza sativa ssp. japonica HOM05D004645 ORTHO05D005693 2.4e-20 104.0 121 44.6
CBR_g4003 Chara braunii HOM05D004645 ORTHO05D005693 5.4e-20 102.8 155 38.7
Os04g0393200 Oryza sativa ssp. japonica HOM05D004645 ORTHO05D005693 4.6e-19 99.8 126 43.7
Psat0s904g0040 Pisum sativum HOM05D004645 ORTHO05D005693 1.3e-18 98.2 96 59.4
Dinv17242 Davidia involucrata HOM05D004645 ORTHO05D005693 8.6e-18 95.5 116 49.1
Sabra13G0065800 Salix brachista HOM05D004645 ORTHO05D005693 1.2e-16 91.7 96 59.4
Actinidia04560 Actinidia chinensis HOM05D004645 ORTHO05D005693 6.8e-15 85.9 114 55.3
FAN01G2860 Fragaria x ananassa HOM05D004645 ORTHO05D005693 1.5e-14 84.7 118 47.5
Haze_00364 Corylus avellana HOM05D004645 ORTHO05D005693 7.5e-14 82.4 122 45.1
Cpa.g.c34419 Carica papaya HOM05D004645 ORTHO05D005693 4.9e-13 79.7 123 42.3
QL09p020516 Quercus lobata HOM05D004645 ORTHO05D005693 4.1e-12 76.6 142 38.0
AL3G45560 Arabidopsis lyrata HOM05D004645 ORTHO05D005693 4.6e-11 73.2 48 66.7
ECA075G0001 Erigeron canadensis HOM05D004645 ORTHO05D005693 9.5e-09 65.5 36 83.3
Oeu057736.1 Olea europaea HOM05D004645 ORTHO05D005693 1.6e-08 64.7 107 40.2


User provided reference genes

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