Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HanXRQChr11g0323391 Helianthus annuus HOM05D000317 ORTHO05D227899 1.9e-40 168.7 84 100.0
Lsat_1_v5_gn_4_48940 Lactuca sativa HOM05D000317 ORTHO05D000032 4.3e-08 61.2 39 71.8
HanXRQChr01g0011641 Helianthus annuus HOM05D000317 ORTHO05D000032 5.6e-08 60.8 37 75.7
HanXRQChr11g0324551 Helianthus annuus HOM05D000317 ORTHO05D000032 9.6e-08 60.1 37 75.7
Eucgr.E02754 Eucalyptus grandis HOM05D000317 ORTHO05D000032 1.2e-07 59.7 96 37.5
HanXRQChr16g0518631 Helianthus annuus HOM05D000317 ORTHO05D000032 1.2e-07 59.7 39 69.2
Glyma.15G083600 Glycine max HOM05D000317 ORTHO05D000032 2.8e-07 58.5 62 51.6
Aqoxy3G04164 Aquilegia oxysepala HOM05D000317 ORTHO05D000032 3.6e-07 58.2 82 40.2
Actinidia07645 Actinidia chinensis HOM05D000317 ORTHO05D000032 4.7e-07 57.8 29 79.3
VMungo0540G0627 Vigna mungo HOM05D000317 ORTHO05D000032 4.7e-07 57.8 62 51.6
Actinidia11159 Actinidia chinensis HOM05D000317 ORTHO05D000032 6.2e-07 57.4 37 73.0
Haze_06816 Corylus avellana HOM05D000317 ORTHO05D000032 6.2e-07 57.4 37 67.6
Duzib168G1133 Durio zibethinus HOM05D000317 ORTHO05D000032 6.2e-07 57.4 37 70.3
Gohir.A08G202401 Gossypium hirsutum HOM05D000317 ORTHO05D000032 6.2e-07 57.4 37 73.0
Gohir.A10G036400 Gossypium hirsutum HOM05D000317 ORTHO05D000032 6.2e-07 57.4 62 50.0
Sc16g0000190 Simmondsia chinensis HOM05D001364 ORTHO05D001316 6.2e-07 57.4 43 74.4
Carub.0008s2613 Capsella rubella HOM05D001364 ORTHO05D001316 8.1e-07 57.0 36 86.1
COL.COLO4_11074 Corchorus olitorius HOM05D000317 ORTHO05D000032 8.1e-07 57.0 37 73.0
Pp3c19_20770 Physcomitrium patens HOM05D001364 ORTHO05D001316 8.1e-07 57.0 42 81.0
Atru.chr8.2296 Acer truncatum HOM05D000317 ORTHO05D000032 1.1e-06 56.6 37 67.6
CSS0011420 Camellia sinensis var. sinensis HOM05D000317 ORTHO05D000032 1.1e-06 56.6 37 67.6
Ca_17916_v3 Cicer arietinum L. HOM05D000317 ORTHO05D000032 1.1e-06 56.6 62 50.0
Prupe.4G018700 Prunus persica HOM05D000317 ORTHO05D000032 1.1e-06 56.6 64 46.9
CiPaw.10G072500 Carya illinoinensis HOM05D000317 ORTHO05D000032 1.4e-06 56.2 37 64.9
ECA234G1787 Erigeron canadensis HOM05D000317 ORTHO05D000032 1.4e-06 56.2 62 48.4
ECA248G0086 Erigeron canadensis HOM05D000317 ORTHO05D000032 1.4e-06 56.2 39 69.2
Glyma.13G228900 Glycine max HOM05D000317 ORTHO05D000032 1.4e-06 56.2 62 50.0
MD00G1037000 Malus domestica HOM05D001364 ORTHO05D001316 1.4e-06 56.2 37 89.2
Manes.16G005500 Manihot esculenta HOM05D000317 ORTHO05D000032 1.4e-06 56.2 37 67.6
Manes.17G026000 Manihot esculenta HOM05D000317 ORTHO05D000032 1.4e-06 56.2 37 64.9
Nn1g05423 Nelumbo nucifera HOM05D001364 ORTHO05D001316 1.4e-06 56.2 37 89.2
Nitab4.5_0005282g0030 Nicotiana tabacum HOM05D001364 ORTHO05D001316 1.4e-06 56.2 49 69.4
Nitab4.5_0007452g0020 Nicotiana tabacum HOM05D001364 ORTHO05D001316 1.4e-06 56.2 49 69.4
Psat7g070880 Pisum sativum HOM05D000317 ORTHO05D000032 1.4e-06 56.2 62 48.4
SEGI_01473 Sequoiadendron giganteum HOM05D000317 ORTHO05D000032 1.4e-06 56.2 37 64.9
Sopen05g029970 Solanum pennellii HOM05D001364 ORTHO05D001316 1.4e-06 56.2 42 78.6
PGSC0003DMG400016798 Solanum tuberosum HOM05D001364 ORTHO05D001316 1.4e-06 56.2 42 78.6
THA.LOC104801673 Tarenaya hassleriana HOM05D001364 ORTHO05D001316 1.4e-06 56.2 37 89.2
THA.LOC104814766 Tarenaya hassleriana HOM05D001364 ORTHO05D001316 1.4e-06 56.2 37 89.2
CAN.G370.92 Capsicum annuum HOM05D000317 ORTHO05D000032 1.8e-06 55.8 72 47.2
Cfa000206 Carpinus fangiana HOM05D000317 ORTHO05D000032 1.8e-06 55.8 37 64.9
Ca_01711_v3 Cicer arietinum L. HOM05D000317 ORTHO05D000032 1.8e-06 55.8 39 69.2
Manes.09G109300 Manihot esculenta HOM05D000317 ORTHO05D000032 1.8e-06 55.8 37 70.3
PSO210G3552 Papaver somniferum HOM05D001364 ORTHO05D001316 1.8e-06 55.8 40 75.0
Pp3c21_17360 Physcomitrium patens HOM05D001364 ORTHO05D001316 1.8e-06 55.8 43 76.7
PGR042G1711 Punica granatum HOM05D000317 ORTHO05D000032 1.8e-06 55.8 62 51.6
Sabra07G0078900 Salix brachista HOM05D001364 ORTHO05D001316 1.8e-06 55.8 33 90.9
Thecc.09G353700 Theobroma cacao HOM05D000317 ORTHO05D000032 1.8e-06 55.8 37 70.3
GSVIVG01020718001 Vitis vinifera HOM05D000317 ORTHO05D000032 1.8e-06 55.8 39 69.2
Zm00001eb277820 Zea mays HOM05D000317 ORTHO05D000032 1.8e-06 55.8 39 66.7
Zm00001eb383720 Zea mays HOM05D000317 ORTHO05D000032 1.8e-06 55.8 39 66.7
Actinidia10952 Actinidia chinensis HOM05D000317 ORTHO05D000032 2.4e-06 55.5 37 70.3
Aa31LG1G16700 Aethionema arabicum HOM05D001364 ORTHO05D001316 2.4e-06 55.5 33 90.9
Gohir.A05G107900 Gossypium hirsutum HOM05D000317 ORTHO05D000032 2.4e-06 55.5 36 72.2
Gohir.D05G108100 Gossypium hirsutum HOM05D000317 ORTHO05D000032 2.4e-06 55.5 36 72.2
Gorai.009G112300 Gossypium raimondii HOM05D000317 ORTHO05D000032 2.4e-06 55.5 36 72.2
HanXRQChr04g0117461 Helianthus annuus HOM05D001364 ORTHO05D001316 2.4e-06 55.5 33 90.9
MBI02_g25403_MAGBIO Magnolia biondii HOM05D000317 ORTHO05D000032 2.4e-06 55.5 37 64.9
Os02g0241200 Oryza sativa ssp. japonica HOM05D000317 ORTHO05D000032 2.4e-06 55.5 39 66.7
Os06g0543200 Oryza sativa ssp. japonica HOM05D000317 ORTHO05D000032 2.4e-06 55.5 39 66.7
Phvul.006G175300 Phaseolus vulgaris HOM05D000317 ORTHO05D000032 2.4e-06 55.5 62 48.4
Pp3c22_11600 Physcomitrium patens HOM05D001364 ORTHO05D001316 2.4e-06 55.5 55 67.3
Zm00001eb238710 Zea mays HOM05D000317 ORTHO05D000032 2.4e-06 55.5 39 66.7
Cpa.g.sc19.148 Carica papaya HOM05D000317 ORTHO05D000032 3.1e-06 55.1 37 70.3
Glyma.12G211600 Glycine max HOM05D000317 ORTHO05D000032 3.1e-06 55.1 69 49.3
Gohir.D10G037100 Gossypium hirsutum HOM05D000317 ORTHO05D000032 3.1e-06 55.1 62 48.4
Gorai.004G233300 Gossypium raimondii HOM05D000317 ORTHO05D000032 3.1e-06 55.1 65 47.7
Gorai.011G039000 Gossypium raimondii HOM05D000317 ORTHO05D000032 3.1e-06 55.1 62 48.4
Hma1.2p1_0068F.1_g037200 Hydrangea macrophylla HOM05D000317 ORTHO05D000032 3.1e-06 55.1 88 38.6
Medtr8g086410 Medicago truncatula HOM05D000317 ORTHO05D000032 3.1e-06 55.1 58 50.0
Nn2g10949 Nelumbo nucifera HOM05D000317 ORTHO05D000032 3.1e-06 55.1 37 67.6
Nitab4.5_0003711g0030 Nicotiana tabacum HOM05D000317 ORTHO05D000032 3.1e-06 55.1 68 48.5
Oeu039910.1 Olea europaea HOM05D000317 ORTHO05D000032 3.1e-06 55.1 39 66.7
QL08p063552 Quercus lobata HOM05D000317 ORTHO05D000032 3.1e-06 55.1 37 70.3
SMO358G0008 Selaginella moellendorffii HOM05D000317 ORTHO05D000032 3.1e-06 55.1 37 64.9
SEGI_26811 Sequoiadendron giganteum HOM05D000317 ORTHO05D000032 3.1e-06 55.1 37 64.9
Aqoxy1G02037 Aquilegia oxysepala HOM05D000317 ORTHO05D000032 4.0e-06 54.7 39 66.7
arahy.Tifrunner.gnm1.ann1.1J8Q1W Arachis hypogaea HOM05D000317 ORTHO05D000032 4.0e-06 54.7 39 66.7
arahy.Tifrunner.gnm1.ann1.GAW0T6 Arachis hypogaea HOM05D000317 ORTHO05D000032 4.0e-06 54.7 39 66.7
Manes.08G095200 Manihot esculenta HOM05D000317 ORTHO05D000032 4.0e-06 54.7 37 67.6
Nitab4.5_0006324g0050 Nicotiana tabacum HOM05D000317 ORTHO05D000032 4.0e-06 54.7 62 50.0
Sabra16G0117500 Salix brachista HOM05D000317 ORTHO05D000032 4.0e-06 54.7 37 67.6
TAR627G1144 Trochodendron aralioides HOM05D000317 ORTHO05D000032 4.0e-06 54.7 39 66.7
Atru.chr3.4144 Acer truncatum HOM05D000317 ORTHO05D000032 5.2e-06 54.3 84 38.1
A02p43440 Brassica napus HOM05D001364 ORTHO05D017670 5.2e-06 54.3 35 82.9
A02p43810 Brassica napus HOM05D001364 ORTHO05D001316 5.2e-06 54.3 35 82.9
BraA02t09269Z Brassica rapa HOM05D001364 ORTHO05D017670 5.2e-06 54.3 35 82.9
CiPaw.13G073300 Carya illinoinensis HOM05D000317 ORTHO05D000032 5.2e-06 54.3 37 64.9
ClCG01G021870 Citrullus lanatus HOM05D000317 ORTHO05D000032 5.2e-06 54.3 37 64.9
Cc01_g14590 Coffea canephora HOM05D000317 ORTHO05D000032 5.2e-06 54.3 37 64.9
COL.COLO4_31794 Corchorus olitorius HOM05D000317 ORTHO05D000032 5.2e-06 54.3 37 62.2
MELO3C007400.2 Cucumis melo HOM05D000317 ORTHO05D000032 5.2e-06 54.3 37 64.9
CsaV3_6G048930 Cucumis sativus L. HOM05D000317 ORTHO05D000032 5.2e-06 54.3 37 64.9
Eucgr.A01921 Eucalyptus grandis HOM05D000317 ORTHO05D000032 5.2e-06 54.3 62 51.6
Thhalv10014635m.g Eutrema salsugineum HOM05D001364 ORTHO05D001316 5.2e-06 54.3 44 70.5
FAN09G1575 Fragaria x ananassa HOM05D000317 ORTHO05D000032 5.2e-06 54.3 66 47.0
Gohir.D08G219200 Gossypium hirsutum HOM05D000317 ORTHO05D000032 5.2e-06 54.3 65 47.7
Lj3g0016294 Lotus japonicus HOM05D000317 ORTHO05D000032 5.2e-06 54.3 62 50.0
Medtr2g016220 Medicago truncatula HOM05D000317 ORTHO05D000032 5.2e-06 54.3 39 64.1
Potri.011G006350 Populus trichocarpa HOM05D000317 ORTHO05D000032 5.2e-06 54.3 37 62.2
Potri.016G121800 Populus trichocarpa HOM05D000317 ORTHO05D000032 5.2e-06 54.3 37 64.9
Sabra10G0143000 Salix brachista HOM05D000317 ORTHO05D000032 5.2e-06 54.3 37 67.6
SEGI_05936 Sequoiadendron giganteum HOM05D000317 ORTHO05D000032 5.2e-06 54.3 37 64.9
Solyc02g076670.3 Solanum lycopersicum HOM05D000317 ORTHO05D000032 5.2e-06 54.3 70 45.7
TWI77G0568 Tripterygium wilfordii HOM05D001364 ORTHO05D001316 5.2e-06 54.3 43 74.4
HPP92_006773 Vanilla planifolia HOM05D000317 ORTHO05D000032 5.2e-06 54.3 38 63.2
Cfa001292 Carpinus fangiana HOM05D000317 ORTHO05D000032 6.9e-06 53.9 37 67.6
CiPaw.14G056500 Carya illinoinensis HOM05D000317 ORTHO05D000032 6.9e-06 53.9 39 61.5
AUR62012280 Chenopodium quinoa HOM05D000317 ORTHO05D000032 6.9e-06 53.9 37 67.6
AUR62022922 Chenopodium quinoa HOM05D000317 ORTHO05D000032 6.9e-06 53.9 37 67.6
Cc06_g00990 Coffea canephora HOM05D000317 ORTHO05D000032 6.9e-06 53.9 80 43.8
Haze_17257 Corylus avellana HOM05D000317 ORTHO05D000032 6.9e-06 53.9 37 67.6
Dinv16783 Davidia involucrata HOM05D000317 ORTHO05D000032 6.9e-06 53.9 38 65.8
Dinv40690 Davidia involucrata HOM05D000317 ORTHO05D000032 6.9e-06 53.9 37 64.9
Duzib150G0390 Durio zibethinus HOM05D000317 ORTHO05D000032 6.9e-06 53.9 75 46.7
PSO229G0034 Papaver somniferum HOM05D000317 ORTHO05D000032 6.9e-06 53.9 37 62.2
PSO447G0151 Papaver somniferum HOM05D001364 ORTHO05D001316 6.9e-06 53.9 33 87.9
Potri.010G099600 Populus trichocarpa HOM05D000317 ORTHO05D000032 6.9e-06 53.9 37 62.2
Potri.017G051600 Populus trichocarpa HOM05D001364 ORTHO05D001316 6.9e-06 53.9 42 76.2
TWI23G0655 Tripterygium wilfordii HOM05D000317 ORTHO05D000032 6.9e-06 53.9 68 47.1
TAR622G0919 Trochodendron aralioides HOM05D000317 ORTHO05D000032 6.9e-06 53.9 84 38.1
TAR633G1292 Trochodendron aralioides HOM05D000317 ORTHO05D000032 6.9e-06 53.9 37 67.6
HPP92_009072 Vanilla planifolia HOM05D000317 ORTHO05D000032 6.9e-06 53.9 37 62.2
AL8G42820 Arabidopsis lyrata HOM05D001364 ORTHO05D001316 9.0e-06 53.5 36 80.6
AT5G65260 Arabidopsis thaliana HOM05D001364 ORTHO05D001316 9.0e-06 53.5 36 80.6
arahy.Tifrunner.gnm1.ann1.86MRWY Arachis hypogaea HOM05D000317 ORTHO05D000032 9.0e-06 53.5 64 48.4
arahy.Tifrunner.gnm1.ann1.I5CHDY Arachis hypogaea HOM05D000317 ORTHO05D000032 9.0e-06 53.5 62 50.0
arahy.Tifrunner.gnm1.ann1.NISN2Q Arachis hypogaea HOM05D000317 ORTHO05D000032 9.0e-06 53.5 62 50.0
arahy.Tifrunner.gnm1.ann1.PVPS7T Arachis hypogaea HOM05D000317 ORTHO05D000032 9.0e-06 53.5 64 48.4
CSS0003450 Camellia sinensis var. sinensis HOM05D000317 ORTHO05D000032 9.0e-06 53.5 39 64.1
CSS0018275 Camellia sinensis var. sinensis HOM05D000317 ORTHO05D000032 9.0e-06 53.5 39 64.1
CiPaw.09G070500 Carya illinoinensis HOM05D000317 ORTHO05D000032 9.0e-06 53.5 62 50.0
ClCG02G017870 Citrullus lanatus HOM05D000317 ORTHO05D000032 9.0e-06 53.5 62 50.0
COL.COLO4_14488 Corchorus olitorius HOM05D000317 ORTHO05D000032 9.0e-06 53.5 37 67.6
COL.COLO4_27278 Corchorus olitorius HOM05D001364 ORTHO05D001316 9.0e-06 53.5 37 83.8
COL.COLO4_27544 Corchorus olitorius HOM05D000317 ORTHO05D000032 9.0e-06 53.5 85 38.8
COL.COLO4_31281 Corchorus olitorius HOM05D000317 ORTHO05D000032 9.0e-06 53.5 69 44.9
MELO3C013578.2 Cucumis melo HOM05D000317 ORTHO05D000032 9.0e-06 53.5 62 50.0
CsaV3_6G015330 Cucumis sativus L. HOM05D000317 ORTHO05D000032 9.0e-06 53.5 62 50.0
Dinv06057 Davidia involucrata HOM05D000317 ORTHO05D000032 9.0e-06 53.5 87 37.9
Glyma.01G123600 Glycine max HOM05D000317 ORTHO05D000032 9.0e-06 53.5 37 67.6
Glyma.05G158900 Glycine max HOM05D000317 ORTHO05D000032 9.0e-06 53.5 62 50.0
Glyma.08G116700 Glycine max HOM05D000317 ORTHO05D000032 9.0e-06 53.5 62 50.0
Glyma.18G204900 Glycine max HOM05D000317 ORTHO05D000032 9.0e-06 53.5 37 67.6
Lj5g0011415 Lotus japonicus HOM05D001364 ORTHO05D001316 9.0e-06 53.5 40 75.0
MD10G1278800 Malus domestica HOM05D000317 ORTHO05D000032 9.0e-06 53.5 39 64.1
Oeu051586.1 Olea europaea HOM05D000317 ORTHO05D000032 9.0e-06 53.5 36 69.4
PSO063G2944 Papaver somniferum HOM05D000317 ORTHO05D000032 9.0e-06 53.5 39 59.0
Phvul.002G239100 Phaseolus vulgaris HOM05D000317 ORTHO05D000032 9.0e-06 53.5 62 50.0
Phvul.005G094600 Phaseolus vulgaris HOM05D000317 ORTHO05D000032 9.0e-06 53.5 62 50.0
Pp3c18_12110 Physcomitrium patens HOM05D001364 ORTHO05D001316 9.0e-06 53.5 32 90.6
Pp3c18_12120 Physcomitrium patens HOM05D001364 ORTHO05D001316 9.0e-06 53.5 32 90.6
Sed0004554 Sechium edule HOM05D000317 ORTHO05D000032 9.0e-06 53.5 62 48.4
SMO271G0150 Selaginella moellendorffii HOM05D000317 ORTHO05D000032 9.0e-06 53.5 29 75.9
THA.LOC104810118 Tarenaya hassleriana HOM05D000317 ORTHO05D000032 9.0e-06 53.5 36 63.9
unitig_578.g16455 Utricularia gibba HOM05D000317 ORTHO05D000032 9.0e-06 53.5 71 47.9
VMungo0251G3551 Vigna mungo HOM05D000317 ORTHO05D000032 9.0e-06 53.5 62 50.0
GSVIVG01030315001 Vitis vinifera HOM05D000317 ORTHO05D000032 9.0e-06 53.5 37 67.6


User provided reference genes

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