Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Eucgr.C03063 Eucalyptus grandis HOM05D001920 ORTHO05D005408 0.0e+00 1249.2 664 100.0
PGR044G1731 Punica granatum HOM05D001920 ORTHO05D005408 1.7e-237 826.2 518 80.7
Duzib187G1306 Durio zibethinus HOM05D001920 ORTHO05D005408 3.9e-237 825.1 529 79.2
Ciclev10007867m.g Citrus clementina HOM05D001920 ORTHO05D005408 2.6e-233 812.4 527 77.6
CSS0047067 Camellia sinensis var. sinensis HOM05D001920 ORTHO05D005408 3.8e-232 808.5 519 78.6
QL02p000680 Quercus lobata HOM05D001920 ORTHO05D005408 4.9e-232 808.1 518 78.0
Thecc.09G057700 Theobroma cacao HOM05D001920 ORTHO05D005408 3.2e-231 805.4 529 77.5
CiPaw.15G036600 Carya illinoinensis HOM05D001920 ORTHO05D005408 2.7e-230 802.4 518 77.8
Haze_18151 Corylus avellana HOM05D001920 ORTHO05D005408 2.7e-230 802.4 546 74.9
Gohir.D08G268800 Gossypium hirsutum HOM05D001920 ORTHO05D005408 4.6e-230 801.6 528 77.5
Gorai.004G286500 Gossypium raimondii HOM05D001920 ORTHO05D005408 7.8e-230 800.8 528 77.3
Atru.chr7.1932 Acer truncatum HOM05D001920 ORTHO05D005408 3.0e-229 798.9 517 78.1
Gohir.A08G247700 Gossypium hirsutum HOM05D001920 ORTHO05D005408 8.7e-229 797.3 530 76.8
Lalb_Chr22g0356171 Lupinus albus HOM05D001920 ORTHO05D005408 3.3e-228 795.4 528 76.5
COL.COLO4_21094 Corchorus olitorius HOM05D001920 ORTHO05D005408 1.6e-227 793.1 525 76.8
Cfa017979 Carpinus fangiana HOM05D001920 ORTHO05D005408 2.1e-227 792.7 512 77.3
CANSAT11G1997 Cannabis sativa HOM05D001920 ORTHO05D005408 2.8e-227 792.3 519 78.0
Prupe.1G408800 Prunus persica HOM05D001920 ORTHO05D005408 2.8e-227 792.3 472 83.7
Sabra06G0174400 Salix brachista HOM05D001920 ORTHO05D005408 2.8e-227 792.3 505 78.6
Dinv12437 Davidia involucrata HOM05D001920 ORTHO05D005408 8.1e-227 790.8 496 80.8
vmacro07770 Vaccinium macrocarpon HOM05D001920 ORTHO05D005408 5.3e-226 788.1 520 76.3
Potri.006G225500 Populus trichocarpa HOM05D001920 ORTHO05D005408 9.0e-226 787.3 517 76.6
Actinidia29326 Actinidia chinensis HOM05D001920 ORTHO05D005408 9.9e-225 783.9 529 75.6
RhsimUnG0209800 Rhododendron simsii HOM05D001920 ORTHO05D005408 2.9e-224 782.3 520 76.3
EL10Ac8g19267 Beta vulgaris HOM05D001920 ORTHO05D005408 3.8e-224 781.9 527 74.8
VMungo0251G2102 Vigna mungo HOM05D001920 ORTHO05D005408 3.8e-224 781.9 494 79.4
Ca_03647_v3 Cicer arietinum L. HOM05D001920 ORTHO05D005408 4.9e-224 781.6 527 75.5
CsaV3_4G035800 Cucumis sativus L. HOM05D001920 ORTHO05D005408 1.9e-223 779.6 519 75.3
MD08G1065800 Malus domestica HOM05D001920 ORTHO05D005408 1.9e-223 779.6 523 76.1
Phvul.003G267800 Phaseolus vulgaris HOM05D001920 ORTHO05D005408 1.9e-223 779.6 494 79.1
TAR626G1364 Trochodendron aralioides HOM05D001920 ORTHO05D005408 1.9e-223 779.6 514 75.7
Manes.16G082600 Manihot esculenta HOM05D001920 ORTHO05D005408 9.3e-223 777.3 478 81.4
RhsimUnG0018300 Rhododendron simsii HOM05D001920 ORTHO05D005408 1.2e-222 776.9 519 76.1
HanXRQChr12g0359101 Helianthus annuus HOM05D001920 ORTHO05D005408 1.6e-222 776.5 517 76.2
MD15G1055600 Malus domestica HOM05D001920 ORTHO05D005408 1.6e-222 776.5 529 74.9
Ah.09g228460 Amaranthus hybridus HOM05D001920 ORTHO05D005408 2.1e-222 776.2 527 74.4
Glyma.16G120600 Glycine max HOM05D001920 ORTHO05D005408 2.1e-222 776.2 529 75.4
Hund19436 Selenicereus undatus HOM05D001920 ORTHO05D005408 2.1e-222 776.2 516 75.6
Migut.D00410 Erythranthe guttata HOM05D001920 ORTHO05D005408 2.7e-222 775.8 528 74.1
HanXRQChr10g0309741 Helianthus annuus HOM05D001920 ORTHO05D005408 4.6e-222 775.0 517 75.8
Medtr8g074590 Medicago truncatula HOM05D001920 ORTHO05D005408 6.0e-222 774.6 506 77.5
Actinidia03557 Actinidia chinensis HOM05D001920 ORTHO05D005408 7.9e-222 774.2 484 79.3
GSVIVG01035413001 Vitis vinifera HOM05D001920 ORTHO05D005408 1.0e-221 773.9 484 79.8
arahy.Tifrunner.gnm1.ann1.9L6JUF Arachis hypogaea HOM05D001920 ORTHO05D005408 1.7e-221 773.1 516 76.7
arahy.Tifrunner.gnm1.ann1.UJN8CA Arachis hypogaea HOM05D001920 ORTHO05D005408 1.7e-221 773.1 536 74.8
Lsat_1_v5_gn_4_73880 Lactuca sativa HOM05D001920 ORTHO05D005408 1.7e-221 773.1 514 76.3
RcHm_v2.0_Chr6g0311281 Rosa chinensis HOM05D001920 ORTHO05D005408 2.3e-221 772.7 542 73.2
TWI34G1596 Tripterygium wilfordii HOM05D001920 ORTHO05D005408 2.3e-221 772.7 477 80.9
Lj7A258G43 Lonicera japonica HOM05D001920 ORTHO05D005408 6.6e-221 771.2 517 76.6
SalBow4G2367 Salvia bowleyana HOM05D001920 ORTHO05D005408 6.6e-221 771.2 527 74.0
THA.LOC104799157 Tarenaya hassleriana HOM05D001920 ORTHO05D005408 8.7e-221 770.8 517 76.4
TWI63G1659 Tripterygium wilfordii HOM05D001920 ORTHO05D005408 1.1e-220 770.4 527 74.8
Glyma.02G043400 Glycine max HOM05D001920 ORTHO05D005408 1.5e-220 770.0 497 78.1
FAN24G1332 Fragaria x ananassa HOM05D001920 ORTHO05D005408 2.5e-220 769.2 535 73.6
FAN27G2437 Fragaria x ananassa HOM05D001920 ORTHO05D005408 4.3e-220 768.5 521 74.9
CARHR201150 Cardamine hirsuta HOM05D001920 ORTHO05D005408 5.6e-220 768.1 516 75.0
DCAR_003139 Daucus carota HOM05D001920 ORTHO05D005408 7.3e-220 767.7 516 75.2
ClCG05G018020 Citrullus lanatus HOM05D001920 ORTHO05D005408 9.6e-220 767.3 518 74.9
Carub.0006s1052 Capsella rubella HOM05D001920 ORTHO05D005408 1.3e-219 766.9 516 74.8
Cc08_g10930 Coffea canephora HOM05D001920 ORTHO05D005408 1.3e-219 766.9 523 73.8
FAN15G2558 Fragaria x ananassa HOM05D001920 ORTHO05D005408 1.3e-219 766.9 535 73.5
Psat4g103240 Pisum sativum HOM05D001920 ORTHO05D005408 1.3e-219 766.9 529 74.9
AL6G22770 Arabidopsis lyrata HOM05D001920 ORTHO05D005408 1.6e-219 766.5 516 74.8
A02p01310 Brassica napus HOM05D001920 ORTHO05D005408 1.6e-219 766.5 517 74.9
BraA02t05109Z Brassica rapa HOM05D001920 ORTHO05D005408 1.6e-219 766.5 517 74.9
FvH4_2g31510 Fragaria vesca HOM05D001920 ORTHO05D005408 1.6e-219 766.5 523 74.6
FAN20G0594 Fragaria x ananassa HOM05D001920 ORTHO05D005408 1.6e-219 766.5 520 74.8
BcaC03g13404 Brassica carinata HOM05D001920 ORTHO05D005408 2.8e-219 765.8 517 74.9
C02p05530 Brassica napus HOM05D001920 ORTHO05D005408 2.8e-219 765.8 517 74.9
BolC2t06498H Brassica oleracea HOM05D001920 ORTHO05D005408 2.8e-219 765.8 517 74.9
arahy.Tifrunner.gnm1.ann1.14SSX1 Arachis hypogaea HOM05D001920 ORTHO05D005408 3.6e-219 765.4 501 78.0
AUR62031243 Chenopodium quinoa HOM05D001920 ORTHO05D005408 3.6e-219 765.4 518 75.1
Lj4g0027878 Lotus japonicus HOM05D001920 ORTHO05D005408 3.6e-219 765.4 497 78.1
Sp6g31610 Schrenkiella parvula HOM05D001920 ORTHO05D005408 3.6e-219 765.4 509 75.2
Peaxi162Scf00694g00218 Petunia axillaris HOM05D001920 ORTHO05D005408 1.4e-218 763.5 525 74.1
BcaB01g05437 Brassica carinata HOM05D001920 ORTHO05D005408 6.9e-218 761.1 516 74.8
Hma1.2p1_0077F.1_g039730 Hydrangea macrophylla HOM05D001920 ORTHO05D005408 9.0e-218 760.8 484 78.9
Nitab4.5_0004053g0020 Nicotiana tabacum HOM05D001920 ORTHO05D005408 2.6e-217 759.2 524 74.0
PGSC0003DMG400006851 Solanum tuberosum HOM05D001920 ORTHO05D005408 3.4e-217 758.8 519 73.8
Sc23g0005750 Simmondsia chinensis HOM05D001920 ORTHO05D005408 4.5e-217 758.4 518 73.9
arahy.Tifrunner.gnm1.ann1.RZJX0Q Arachis hypogaea HOM05D001920 ORTHO05D005408 5.8e-217 758.1 516 75.8
A03p05350 Brassica napus HOM05D001920 ORTHO05D005408 5.8e-217 758.1 517 74.1
Thhalv10013117m.g Eutrema salsugineum HOM05D001920 ORTHO05D005408 1.7e-216 756.5 517 74.1
C03p06150 Brassica napus HOM05D001920 ORTHO05D005408 2.2e-216 756.1 517 74.5
CAN.G219.68 Capsicum annuum HOM05D001920 ORTHO05D005408 2.2e-216 756.1 493 76.5
BolC3t13123H Brassica oleracea HOM05D001920 ORTHO05D005408 6.4e-216 754.6 517 74.1
Aa31LG3G15240 Aethionema arabicum HOM05D001920 ORTHO05D005408 2.1e-214 749.6 444 82.0
Solyc01g087650.4 Solanum lycopersicum HOM05D001920 ORTHO05D005408 4.6e-214 748.4 496 76.0
MSTRG.14078 Avicennia marina HOM05D001920 ORTHO05D005408 3.0e-213 745.7 502 75.7
AUR62027456 Chenopodium quinoa HOM05D001920 ORTHO05D005408 1.5e-212 743.4 517 73.7
BraA03t09873Z Brassica rapa HOM05D001920 ORTHO05D005408 3.3e-212 742.3 546 70.1
Sopen01g034610 Solanum pennellii HOM05D001920 ORTHO05D005408 4.3e-212 741.9 521 72.6
PSO210G2773 Papaver somniferum HOM05D001920 ORTHO05D005408 1.3e-211 740.3 539 70.1
Aqoxy6G00323 Aquilegia oxysepala HOM05D001920 ORTHO05D005408 1.6e-211 740.0 514 72.8
CDE05G1481 Ceratophyllum demersum HOM05D001920 ORTHO05D005408 1.8e-210 736.5 499 73.3
PSO210G7360 Papaver somniferum HOM05D001920 ORTHO05D005408 5.8e-209 731.5 524 70.8
ECA234G0290 Erigeron canadensis HOM05D001920 ORTHO05D005408 1.7e-208 729.9 525 70.9
Migut.E01586 Erythranthe guttata HOM05D001920 ORTHO05D005408 3.8e-208 728.8 534 70.6
Sed0005880 Sechium edule HOM05D001920 ORTHO05D005408 6.7e-205 718.0 446 78.5
MELO3C016885.2 Cucumis melo HOM05D001920 ORTHO05D005408 1.5e-204 716.8 510 71.6
Sed0005137 Sechium edule HOM05D001920 ORTHO05D005408 9.6e-204 714.1 451 77.4
Hma1.2p1_0196F.1_g084800 Hydrangea macrophylla HOM05D001920 ORTHO05D005408 5.3e-202 708.4 535 69.3
BcaNung02634 Brassica carinata HOM05D001920 ORTHO05D005408 2.6e-201 706.1 520 70.6
Nn8g38775 Nelumbo nucifera HOM05D001920 ORTHO05D005408 1.3e-200 703.7 433 80.6
ATR0686G037 Amborella trichopoda HOM05D001920 ORTHO05D005408 2.9e-200 702.6 523 69.6
AT5G11980 Arabidopsis thaliana HOM05D001920 ORTHO05D005408 1.3e-197 693.7 435 79.3
HPP92_005529 Vanilla planifolia HOM05D001920 ORTHO05D005408 1.5e-196 690.3 524 67.0
unitig_8.g5056 Utricularia gibba HOM05D001920 ORTHO05D005408 1.8e-194 683.3 514 67.5
Os12g0538300 Oryza sativa ssp. japonica HOM05D001920 ORTHO05D005408 4.5e-193 678.7 469 71.6
Zm00001eb006920 Zea mays HOM05D001920 ORTHO05D005408 1.3e-192 677.2 469 71.0
Zm00001eb401360 Zea mays HOM05D001920 ORTHO05D005408 2.9e-192 676.0 488 69.3
Cpa.g.sc222.19 Carica papaya HOM05D001920 ORTHO05D005408 1.2e-190 670.6 528 68.4
SGA_v2.0_scaffold169G38703 Striga asiatica HOM05D001920 ORTHO05D005408 3.0e-181 639.4 511 66.1
TPR.G14979 Trifolium pratense HOM05D001920 ORTHO05D005408 1.9e-175 620.2 381 82.2
MBI18_g38862_MAGBIO Magnolia biondii HOM05D001920 ORTHO05D005408 2.1e-174 616.7 514 63.8
Mapoly0087s0038 Marchantia polymorpha HOM05D001920 ORTHO05D005408 3.5e-169 599.4 493 62.5
Lj7C259T3 Lonicera japonica HOM05D001920 ORTHO05D005408 5.5e-167 592.0 319 90.9
Pp3c10_11790 Physcomitrium patens HOM05D001920 ORTHO05D005408 9.4e-167 591.3 469 63.3
CBR_g34170 Chara braunii HOM05D001920 ORTHO05D005408 2.2e-163 580.1 472 60.4
Lj7C264G4 Lonicera japonica HOM05D001920 ORTHO05D005408 8.5e-160 568.2 491 61.5
SMO356G0672 Selaginella moellendorffii HOM05D001920 ORTHO05D005408 2.5e-159 566.6 499 59.1
SHI18715 Sapria himalayana HOM05D001920 ORTHO05D005408 7.2e-159 565.1 432 66.0
Nitab4.5_0000707g0110 Nicotiana tabacum HOM05D001920 ORTHO05D005408 4.9e-155 552.4 525 58.3
Pp3c2_14420 Physcomitrium patens HOM05D001920 ORTHO05D005408 7.0e-154 548.5 387 68.0
RcHm_v2.0_Chr4g0442191 Rosa chinensis HOM05D001920 ORTHO05D005408 1.1e-143 514.6 490 56.5
Oeu003998.1 Olea europaea HOM05D001920 ORTHO05D005408 6.2e-142 508.8 510 55.9
FAN12G3829 Fragaria x ananassa HOM05D001920 ORTHO05D005408 2.2e-139 500.4 482 56.6
FvH4_4g33140 Fragaria vesca HOM05D001920 ORTHO05D005408 4.9e-139 499.2 482 56.4
FAN07G1923 Fragaria x ananassa HOM05D001920 ORTHO05D005408 4.1e-138 496.1 484 56.6
AagrBONN_evm.TU.Sc2ySwM_228.4615 Anthoceros agrestis HOM05D001920 ORTHO05D005408 3.3e-135 486.5 331 71.3
MBI05_g36626_MAGBIO Magnolia biondii HOM05D001920 ORTHO05D005408 7.5e-132 475.3 500 53.8
SGA_v2.0_scaffold163G38013 Striga asiatica HOM05D001920 ORTHO05D005408 1.3e-123 448.0 313 75.4
FAN22G0219 Fragaria x ananassa HOM05D001920 ORTHO05D005408 1.3e-115 421.4 479 50.1
PRCOL_00001520 Prasinoderma coloniale HOM05D001920 ORTHO05D005408 1.7e-104 384.4 490 43.9
Cre10.g439650 Chlamydomonas reinhardtii HOM05D001920 ORTHO05D005408 1.8e-88 331.3 442 41.9
Oeu004630.1 Olea europaea HOM05D001920 ORTHO05D005408 3.0e-88 330.5 561 40.6
FAN12G2252 Fragaria x ananassa HOM05D001920 ORTHO05D005408 1.1e-87 328.6 346 53.5
MCO04G241 Micromonas commoda HOM05D001920 ORTHO05D005408 4.3e-87 326.6 435 40.7
FAN17G1736 Fragaria x ananassa HOM05D001920 ORTHO05D005408 1.6e-78 298.1 414 44.9
Eucgr.L03492 Eucalyptus grandis HOM05D001920 ORTHO05D005408 2.3e-72 277.7 148 97.3
CDE05G0360 Ceratophyllum demersum HOM05D001920 ORTHO05D005408 3.0e-64 250.8 185 65.4
CDE05G1717 Ceratophyllum demersum HOM05D001920 ORTHO05D005408 8.8e-48 196.1 218 49.5
arahy.Tifrunner.gnm1.ann1.NPWH83 Arachis hypogaea HOM05D001920 ORTHO05D005408 3.2e-42 177.6 105 81.0
MSTRG.25967 Avicennia marina HOM05D001920 ORTHO05D005408 2.0e-39 168.3 106 83.0
Migut.A00111 Erythranthe guttata HOM05D001920 ORTHO05D005408 1.6e-36 158.7 128 67.2
Gohir.D05G042133 Gossypium hirsutum HOM05D001920 ORTHO05D005408 7.8e-36 156.4 216 45.4
Gorai.009G043000 Gossypium raimondii HOM05D001920 ORTHO05D005408 2.9e-35 154.5 218 44.5
BcaNung02635 Brassica carinata HOM05D001920 ORTHO05D005408 4.1e-29 134.0 80 77.5
MBI13_g05979_MAGBIO Magnolia biondii HOM05D001920 ORTHO05D005408 1.6e-28 132.1 365 29.9
TPR.G748 Trifolium pratense HOM05D001920 ORTHO05D005408 1.0e-19 102.8 65 75.4
BcaC05g26027 Brassica carinata HOM05D001920 ORTHO05D024365 5.0e-19 100.5 81 65.4
SEGI_36171 Sequoiadendron giganteum HOM05D001920 ORTHO05D000001 1.5e-18 99.0 104 53.8
SGA_v2.0_scaffold26G11215 Striga asiatica HOM05D001920 ORTHO05D024365 4.7e-17 94.0 79 64.6
TPR.G14973 Trifolium pratense HOM05D001920 ORTHO05D005408 1.2e-15 89.4 90 44.4
C05p19930 Brassica napus HOM05D001920 ORTHO05D024365 3.5e-12 77.8 91 49.5
C06p01410 Brassica napus HOM05D001920 ORTHO05D024365 1.0e-11 76.3 98 46.9
BolC5t30691H Brassica oleracea HOM05D001920 ORTHO05D024365 6.6e-11 73.6 43 79.1
Lj7A259T19 Lonicera japonica HOM05D001920 ORTHO05D235283 1.4e-08 65.9 141 34.0
ATR0009G024 Amborella trichopoda HOM05D001920 ORTHO05D005408 1.2e-07 62.8 75 46.7
Lsat_1_v5_gn_6_51140 Lactuca sativa HOM05D001920 ORTHO05D233273 3.4e-07 61.2 52 57.7
Lj7A264G15 Lonicera japonica HOM05D001920 ORTHO05D005408 1.7e-06 58.9 76 50.0
Lsat_1_v5_gn_1_94900 Lactuca sativa HOM05D001920 ORTHO05D231497 3.8e-06 57.8 50 56.0


User provided reference genes

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