Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Eucgr.C01103 Eucalyptus grandis HOM05D008081 ORTHO05D010223 6.4e-193 677.2 323 100.0
Eucgr.L02382 Eucalyptus grandis HOM05D008081 ORTHO05D010223 1.9e-189 665.6 323 99.1
PGR142G1327 Punica granatum HOM05D008081 ORTHO05D010223 1.2e-98 364.0 323 55.7
CSS0001106 Camellia sinensis var. sinensis HOM05D008081 ORTHO05D010223 1.7e-97 360.1 323 55.1
Nn2g11886 Nelumbo nucifera HOM05D008081 ORTHO05D010223 1.1e-96 357.5 322 55.3
CSS0008637 Camellia sinensis var. sinensis HOM05D008081 ORTHO05D010223 2.1e-95 353.2 323 53.9
COL.COLO4_34977 Corchorus olitorius HOM05D008081 ORTHO05D010223 6.1e-95 351.7 326 54.0
Manes.14G127800 Manihot esculenta HOM05D008081 ORTHO05D010223 8.0e-95 351.3 325 54.2
HanXRQChr10g0316871 Helianthus annuus HOM05D008081 ORTHO05D010223 3.0e-94 349.4 328 53.7
Thecc.09G118700 Theobroma cacao HOM05D008081 ORTHO05D010223 8.8e-94 347.8 322 54.0
Hma1.2p1_0018F.1_g012950 Hydrangea macrophylla HOM05D008081 ORTHO05D010223 2.0e-93 346.7 326 54.0
Ca_02616_v3 Cicer arietinum L. HOM05D008081 ORTHO05D010223 4.4e-93 345.5 322 55.3
Duzib168G0460 Durio zibethinus HOM05D008081 ORTHO05D010223 1.7e-92 343.6 320 53.8
QL02p086958 Quercus lobata HOM05D008081 ORTHO05D010223 2.8e-92 342.8 323 53.3
CSS0031360 Camellia sinensis var. sinensis HOM05D008081 ORTHO05D010223 5.4e-91 338.6 323 53.3
Lsat_1_v5_gn_5_98420 Lactuca sativa HOM05D008081 ORTHO05D010223 9.1e-91 337.8 322 51.9
Glyma.04G150400 Glycine max HOM05D008081 ORTHO05D010223 2.7e-90 336.3 328 52.7
Aqoxy7G01970 Aquilegia oxysepala HOM05D008081 ORTHO05D010223 3.5e-90 335.9 327 52.0
Glyma.06G213000 Glycine max HOM05D008081 ORTHO05D010223 3.5e-90 335.9 328 52.7
Psat1g025520 Pisum sativum HOM05D008081 ORTHO05D010223 4.5e-90 335.5 324 53.4
DCAR_009223 Daucus carota HOM05D008081 ORTHO05D010223 7.7e-90 334.7 328 52.7
Nitab4.5_0000282g0020 Nicotiana tabacum HOM05D008081 ORTHO05D010223 7.7e-90 334.7 324 51.9
Lalb_Chr01g0020971 Lupinus albus HOM05D008081 ORTHO05D010223 1.3e-89 334.0 325 52.0
ECA234G2703 Erigeron canadensis HOM05D008081 ORTHO05D010223 5.0e-89 332.0 316 51.3
Medtr2g055250 Medicago truncatula HOM05D008081 ORTHO05D010223 5.0e-89 332.0 324 52.8
Phvul.009G199400 Phaseolus vulgaris HOM05D008081 ORTHO05D010223 1.5e-88 330.5 323 52.9
TAR383G0366 Trochodendron aralioides HOM05D008081 ORTHO05D010223 5.5e-88 328.6 311 53.7
CANSAT56G1336 Cannabis sativa HOM05D008081 ORTHO05D010223 1.2e-87 327.4 322 50.0
Cpa.g.sc75.87 Carica papaya HOM05D008081 ORTHO05D010223 1.6e-87 327.0 331 52.3
Cc06_g09100 Coffea canephora HOM05D008081 ORTHO05D010223 2.8e-87 326.2 331 51.1
MBI04_g33811_MAGBIO Magnolia biondii HOM05D008081 ORTHO05D010223 3.0e-86 322.8 321 50.8
Lj1g0011101 Lotus japonicus HOM05D008081 ORTHO05D010223 8.9e-86 321.2 334 51.2
VMungo1309G1591 Vigna mungo HOM05D008081 ORTHO05D010223 1.2e-85 320.9 328 51.8
Gorai.010G066900 Gossypium raimondii HOM05D008081 ORTHO05D010223 5.7e-85 318.5 323 51.1
Gohir.D06G057200 Gossypium hirsutum HOM05D008081 ORTHO05D010223 3.7e-84 315.8 323 51.1
PSO765G0202 Papaver somniferum HOM05D008081 ORTHO05D010223 4.9e-84 315.5 325 49.8
Gohir.A06G059000 Gossypium hirsutum HOM05D008081 ORTHO05D010223 1.4e-83 313.9 323 50.5
PSO349G0241 Papaver somniferum HOM05D008081 ORTHO05D010223 2.0e-82 310.1 327 49.8
Peaxi162Scf00292g00051 Petunia axillaris HOM05D008081 ORTHO05D010223 2.7e-82 309.7 302 50.3
Atru.chr7.1264 Acer truncatum HOM05D008081 ORTHO05D010223 3.5e-82 309.3 333 47.1
GSVIVG01015465001 Vitis vinifera HOM05D008081 ORTHO05D010223 3.5e-82 309.3 323 49.8
Sabra18G0062600 Salix brachista HOM05D008081 ORTHO05D010223 2.3e-81 306.6 330 47.9
Potri.018G071900 Populus trichocarpa HOM05D008081 ORTHO05D010223 5.0e-81 305.4 332 47.3
Sopen08g011800 Solanum pennellii HOM05D008081 ORTHO05D010223 1.5e-80 303.9 337 46.9
TWI34G1060 Tripterygium wilfordii HOM05D008081 ORTHO05D010223 1.9e-80 303.5 323 46.1
Ciclev10008639m.g Citrus clementina HOM05D008081 ORTHO05D010223 4.3e-80 302.4 324 47.5
Solyc08g041700.1 Solanum lycopersicum HOM05D008081 ORTHO05D010223 5.6e-80 302.0 337 46.6
PGSC0003DMG400015624 Solanum tuberosum HOM05D008081 ORTHO05D010223 4.7e-79 298.9 335 47.5
Nitab4.5_0003085g0020 Nicotiana tabacum HOM05D008081 ORTHO05D010223 1.4e-75 287.3 289 50.5
Oeu032197.1 Olea europaea HOM05D008081 ORTHO05D010223 3.9e-73 279.3 323 45.5
Os01g0647000 Oryza sativa ssp. japonica HOM05D008081 ORTHO05D010223 9.5e-72 274.6 320 45.9
Actinidia09389 Actinidia chinensis HOM05D008081 ORTHO05D010223 3.6e-71 272.7 258 51.6
AL6G31500 Arabidopsis lyrata HOM05D008081 ORTHO05D010223 4.0e-70 269.2 326 43.6
Zm00001eb158500 Zea mays HOM05D008081 ORTHO05D010223 1.2e-69 267.7 319 44.8
Carub.0006s1834 Capsella rubella HOM05D008081 ORTHO05D010223 2.0e-69 266.9 326 43.6
Thhalv10013658m.g Eutrema salsugineum HOM05D008081 ORTHO05D010223 2.0e-69 266.9 327 42.5
AT5G19970 Arabidopsis thaliana HOM05D008081 ORTHO05D010223 4.4e-69 265.8 325 43.4
Thhalv10013905m.g Eutrema salsugineum HOM05D008081 ORTHO05D010223 7.5e-69 265.0 327 42.2
CARHR192880 Cardamine hirsuta HOM05D008081 ORTHO05D010223 2.4e-67 260.0 326 42.3
BNapus_Darmor_BZH_scaffold_38p01920 Brassica napus HOM05D008081 ORTHO05D010223 3.2e-67 259.6 325 42.8
BolC2t06998H Brassica oleracea HOM05D008081 ORTHO05D010223 3.2e-67 259.6 325 42.8
Sp6g24410 Schrenkiella parvula HOM05D008081 ORTHO05D010223 7.0e-67 258.5 329 41.9
A02p05940 Brassica napus HOM05D008081 ORTHO05D010223 6.0e-66 255.4 325 41.8
BraA02t05546Z Brassica rapa HOM05D008081 ORTHO05D010223 6.0e-66 255.4 325 41.8
Aa31LG4G11630 Aethionema arabicum HOM05D008081 ORTHO05D010223 4.0e-62 242.7 328 41.2
ATR0083G076 Amborella trichopoda HOM05D008081 ORTHO05D010223 8.9e-54 214.9 310 38.4
THA.LOC104815107 Tarenaya hassleriana HOM05D008081 ORTHO05D010223 5.8e-53 212.2 328 39.3
CSS0020794 Camellia sinensis var. sinensis HOM05D008081 ORTHO05D010223 7.1e-51 205.3 310 41.3
Dinv36582 Davidia involucrata HOM05D008081 ORTHO05D010223 9.2e-51 204.9 230 50.0
TPR.G30892 Trifolium pratense HOM05D008081 ORTHO05D010223 8.7e-49 198.4 208 50.0
BcaB05g22890 Brassica carinata HOM05D008081 ORTHO05D010223 6.6e-41 172.2 242 38.0
BcaC03g13723 Brassica carinata HOM05D008081 ORTHO05D010223 8.7e-25 118.6 131 39.7


User provided reference genes

Program Settings