OrthologsController Object
(
[name] => Orthologs
[helpers] => Array
(
[Session] =>
[Html] =>
[Form] =>
[Cache] =>
)
[uses] => Array
(
[0] => Annotation
[1] => AnnotSource
[2] => Configuration
[3] => DnaMotifsCns
[4] => GfDatum
[5] => Msa
[6] => Orthologs
[7] => Similarities
[8] => Trees
[9] => AdExperiments
[10] => FunctionalClustersExperiments
)
[components] => Array
(
[Session] =>
[DataUtils] =>
[FunctionalAnnotationUtils] =>
[GeneFamilies] =>
[Organism] =>
[Blast] =>
[WorkbenchUtils] =>
[Orthology] =>
)
[request] => CakeRequest Object
(
[params] => Array
(
[plugin] =>
[controller] => orthologs
[action] => overview
[named] => Array
(
)
[pass] => Array
(
[0] => C05p53440
)
)
[data] => Array
(
)
[query] => Array
(
)
[url] => orthologs/overview/C05p53440
[base] => /plaza.dev/_dev_instances/feedback
[webroot] => /plaza.dev/_dev_instances/feedback/
[here] => /plaza.dev/_dev_instances/feedback/orthologs/overview/C05p53440
[_detectors:protected] => Array
(
[get] => Array
(
[env] => REQUEST_METHOD
[value] => GET
)
[patch] => Array
(
[env] => REQUEST_METHOD
[value] => PATCH
)
[post] => Array
(
[env] => REQUEST_METHOD
[value] => POST
)
[put] => Array
(
[env] => REQUEST_METHOD
[value] => PUT
)
[delete] => Array
(
[env] => REQUEST_METHOD
[value] => DELETE
)
[head] => Array
(
[env] => REQUEST_METHOD
[value] => HEAD
)
[options] => Array
(
[env] => REQUEST_METHOD
[value] => OPTIONS
)
[ssl] => Array
(
[env] => HTTPS
[value] => 1
)
[ajax] => Array
(
[env] => HTTP_X_REQUESTED_WITH
[value] => XMLHttpRequest
)
[flash] => Array
(
[env] => HTTP_USER_AGENT
[pattern] => /^(Shockwave|Adobe) Flash/
)
[mobile] => Array
(
[env] => HTTP_USER_AGENT
[options] => Array
(
[0] => Android
[1] => AvantGo
[2] => BB10
[3] => BlackBerry
[4] => DoCoMo
[5] => Fennec
[6] => iPod
[7] => iPhone
[8] => iPad
[9] => J2ME
[10] => MIDP
[11] => NetFront
[12] => Nokia
[13] => Opera Mini
[14] => Opera Mobi
[15] => PalmOS
[16] => PalmSource
[17] => portalmmm
[18] => Plucker
[19] => ReqwirelessWeb
[20] => SonyEricsson
[21] => Symbian
[22] => UP\.Browser
[23] => webOS
[24] => Windows CE
[25] => Windows Phone OS
[26] => Xiino
)
)
[requested] => Array
(
[param] => requested
[value] => 1
)
[json] => Array
(
[accept] => Array
(
[0] => application/json
)
[param] => ext
[value] => json
)
[xml] => Array
(
[accept] => Array
(
[0] => application/xml
[1] => text/xml
)
[param] => ext
[value] => xml
)
)
[_input:protected] =>
)
[response] => CakeResponse Object
(
[_statusCodes:protected] => Array
(
[100] => Continue
[101] => Switching Protocols
[200] => OK
[201] => Created
[202] => Accepted
[203] => Non-Authoritative Information
[204] => No Content
[205] => Reset Content
[206] => Partial Content
[300] => Multiple Choices
[301] => Moved Permanently
[302] => Found
[303] => See Other
[304] => Not Modified
[305] => Use Proxy
[307] => Temporary Redirect
[400] => Bad Request
[401] => Unauthorized
[402] => Payment Required
[403] => Forbidden
[404] => Not Found
[405] => Method Not Allowed
[406] => Not Acceptable
[407] => Proxy Authentication Required
[408] => Request Time-out
[409] => Conflict
[410] => Gone
[411] => Length Required
[412] => Precondition Failed
[413] => Request Entity Too Large
[414] => Request-URI Too Large
[415] => Unsupported Media Type
[416] => Requested range not satisfiable
[417] => Expectation Failed
[429] => Too Many Requests
[500] => Internal Server Error
[501] => Not Implemented
[502] => Bad Gateway
[503] => Service Unavailable
[504] => Gateway Time-out
[505] => Unsupported Version
)
[_mimeTypes:protected] => Array
(
[html] => Array
(
[0] => text/html
[1] => */*
)
[json] => application/json
[xml] => Array
(
[0] => application/xml
[1] => text/xml
)
[rss] => application/rss+xml
[ai] => application/postscript
[bcpio] => application/x-bcpio
[bin] => application/octet-stream
[ccad] => application/clariscad
[cdf] => application/x-netcdf
[class] => application/octet-stream
[cpio] => application/x-cpio
[cpt] => application/mac-compactpro
[csh] => application/x-csh
[csv] => Array
(
[0] => text/csv
[1] => application/vnd.ms-excel
)
[dcr] => application/x-director
[dir] => application/x-director
[dms] => application/octet-stream
[doc] => application/msword
[docx] => application/vnd.openxmlformats-officedocument.wordprocessingml.document
[drw] => application/drafting
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[dwg] => application/acad
[dxf] => application/dxf
[dxr] => application/x-director
[eot] => application/vnd.ms-fontobject
[eps] => application/postscript
[exe] => application/octet-stream
[ez] => application/andrew-inset
[flv] => video/x-flv
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[bz2] => application/x-bzip
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[hqx] => application/mac-binhex40
[ico] => image/x-icon
[ips] => application/x-ipscript
[ipx] => application/x-ipix
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[latex] => application/x-latex
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[man] => application/x-troff-man
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[oda] => application/oda
[otf] => font/otf
[pdf] => application/pdf
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[shar] => application/x-shar
[sit] => application/x-stuffit
[skd] => application/x-koan
[skm] => application/x-koan
[skp] => application/x-koan
[skt] => application/x-koan
[smi] => application/smil
[smil] => application/smil
[sol] => application/solids
[spl] => application/x-futuresplash
[src] => application/x-wais-source
[step] => application/STEP
[stl] => application/SLA
[stp] => application/STEP
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[sv4crc] => application/x-sv4crc
[svg] => image/svg+xml
[svgz] => image/svg+xml
[swf] => application/x-shockwave-flash
[t] => application/x-troff
[tar] => application/x-tar
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[tex] => application/x-tex
[texi] => application/x-texinfo
[texinfo] => application/x-texinfo
[tr] => application/x-troff
[tsp] => application/dsptype
[ttc] => font/ttf
[ttf] => font/ttf
[unv] => application/i-deas
[ustar] => application/x-ustar
[vcd] => application/x-cdlink
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[xll] => application/vnd.ms-excel
[xlm] => application/vnd.ms-excel
[xls] => application/vnd.ms-excel
[xlsx] => application/vnd.openxmlformats-officedocument.spreadsheetml.sheet
[xlw] => application/vnd.ms-excel
[zip] => application/zip
[aif] => audio/x-aiff
[aifc] => audio/x-aiff
[aiff] => audio/x-aiff
[au] => audio/basic
[kar] => audio/midi
[mid] => audio/midi
[midi] => audio/midi
[mp2] => audio/mpeg
[mp3] => audio/mpeg
[mpga] => audio/mpeg
[ogg] => audio/ogg
[oga] => audio/ogg
[spx] => audio/ogg
[ra] => audio/x-realaudio
[ram] => audio/x-pn-realaudio
[rm] => audio/x-pn-realaudio
[rpm] => audio/x-pn-realaudio-plugin
[snd] => audio/basic
[tsi] => audio/TSP-audio
[wav] => audio/x-wav
[aac] => audio/aac
[asc] => text/plain
[c] => text/plain
[cc] => text/plain
[css] => text/css
[etx] => text/x-setext
[f] => text/plain
[f90] => text/plain
[h] => text/plain
[hh] => text/plain
[htm] => Array
(
[0] => text/html
[1] => */*
)
[ics] => text/calendar
[m] => text/plain
[rtf] => text/rtf
[rtx] => text/richtext
[sgm] => text/sgml
[sgml] => text/sgml
[tsv] => text/tab-separated-values
[tpl] => text/template
[txt] => text/plain
[text] => text/plain
[avi] => video/x-msvideo
[fli] => video/x-fli
[mov] => video/quicktime
[movie] => video/x-sgi-movie
[mpe] => video/mpeg
[mpeg] => video/mpeg
[mpg] => video/mpeg
[qt] => video/quicktime
[viv] => video/vnd.vivo
[vivo] => video/vnd.vivo
[ogv] => video/ogg
[webm] => video/webm
[mp4] => video/mp4
[m4v] => video/mp4
[f4v] => video/mp4
[f4p] => video/mp4
[m4a] => audio/mp4
[f4a] => audio/mp4
[f4b] => audio/mp4
[gif] => image/gif
[ief] => image/ief
[jpg] => image/jpeg
[jpeg] => image/jpeg
[jpe] => image/jpeg
[pbm] => image/x-portable-bitmap
[pgm] => image/x-portable-graymap
[png] => image/png
[pnm] => image/x-portable-anymap
[ppm] => image/x-portable-pixmap
[ras] => image/cmu-raster
[rgb] => image/x-rgb
[tif] => image/tiff
[tiff] => image/tiff
[xbm] => image/x-xbitmap
[xpm] => image/x-xpixmap
[xwd] => image/x-xwindowdump
[psd] => Array
(
[0] => application/photoshop
[1] => application/psd
[2] => image/psd
[3] => image/x-photoshop
[4] => image/photoshop
[5] => zz-application/zz-winassoc-psd
)
[ice] => x-conference/x-cooltalk
[iges] => model/iges
[igs] => model/iges
[mesh] => model/mesh
[msh] => model/mesh
[silo] => model/mesh
[vrml] => model/vrml
[wrl] => model/vrml
[mime] => www/mime
[pdb] => chemical/x-pdb
[xyz] => chemical/x-pdb
[javascript] => application/javascript
[form] => application/x-www-form-urlencoded
[file] => multipart/form-data
[xhtml] => Array
(
[0] => application/xhtml+xml
[1] => application/xhtml
[2] => text/xhtml
)
[xhtml-mobile] => application/vnd.wap.xhtml+xml
[atom] => application/atom+xml
[amf] => application/x-amf
[wap] => Array
(
[0] => text/vnd.wap.wml
[1] => text/vnd.wap.wmlscript
[2] => image/vnd.wap.wbmp
)
[wml] => text/vnd.wap.wml
[wmlscript] => text/vnd.wap.wmlscript
[wbmp] => image/vnd.wap.wbmp
[woff] => application/x-font-woff
[webp] => image/webp
[appcache] => text/cache-manifest
[manifest] => text/cache-manifest
[htc] => text/x-component
[rdf] => application/xml
[crx] => application/x-chrome-extension
[oex] => application/x-opera-extension
[xpi] => application/x-xpinstall
[safariextz] => application/octet-stream
[webapp] => application/x-web-app-manifest+json
[vcf] => text/x-vcard
[vtt] => text/vtt
[mkv] => video/x-matroska
[pkpass] => application/vnd.apple.pkpass
[ajax] => text/html
)
[_protocol:protected] => HTTP/1.1
[_status:protected] => 200
[_contentType:protected] => text/html
[_headers:protected] => Array
(
)
[_body:protected] =>
[_file:protected] =>
[_fileRange:protected] =>
[_charset:protected] => UTF-8
[_cacheDirectives:protected] => Array
(
)
[_cookies:protected] => Array
(
)
)
[_responseClass:protected] => CakeResponse
[viewPath] => Orthologs
[layoutPath] =>
[viewVars] => Array
(
[sidebar] => gene_sidebar
[navigation_bar_info] => Array
(
[num_colinearity_runs] => 1
[num_colinearity_with_dating_runs] => 0
[num_functional_clusters_runs] => 6
[has_pan_genomes] =>
[has_blast_db] => 1
)
[sidebar_information] => Array
(
[type] => gene_id
[id] => C05p53440
)
[all_organisms] => Array
(
[acertr] => Array
(
[species] => acertr
[common_name] => Acer truncatum
[tax_id] => 47965
[version] => v2.0
)
[ach] => Array
(
[species] => ach
[common_name] => Actinidia chinensis
[tax_id] => 3625
[version] => V3.0
)
[aar] => Array
(
[species] => aar
[common_name] => Aethionema arabicum
[tax_id] => 228871
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)
[amhyb] => Array
(
[species] => amhyb
[common_name] => Amaranthus hybridus
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[version] => v1.0
)
[atr] => Array
(
[species] => atr
[common_name] => Amborella trichopoda
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[version] => JGI v1.0
)
[aag] => Array
(
[species] => aag
[common_name] => Anthoceros agrestis
[tax_id] => 41834
[version] => v1.1
)
[aox] => Array
(
[species] => aox
[common_name] => Aquilegia oxysepala
[tax_id] => 432649
[version] => v1.0
)
[aly] => Array
(
[species] => aly
[common_name] => Arabidopsis lyrata
[tax_id] => 59689
[version] => JGI v2.1
)
[ath] => Array
(
[species] => ath
[common_name] => Arabidopsis thaliana
[tax_id] => 3702
[version] => Araport11
)
[arhy] => Array
(
[species] => arhy
[common_name] => Arachis hypogaea
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[version] => v1.0
)
[ama] => Array
(
[species] => ama
[common_name] => Avicennia marina
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[version] => v1.1 20200527
)
[bvu] => Array
(
[species] => bvu
[common_name] => Beta vulgaris
[tax_id] => 161934
[version] => EL10_1.0
)
[bca] => Array
(
[species] => bca
[common_name] => Brassica carinata
[tax_id] => 52824
[version] => V1.0
)
[bna] => Array
(
[species] => bna
[common_name] => Brassica napus
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[version] => v2.0
)
[bol] => Array
(
[species] => bol
[common_name] => Brassica oleracea
[tax_id] => 109376
[version] => v1.0
)
[bra] => Array
(
[species] => bra
[common_name] => Brassica rapa
[tax_id] => 3711
[version] => v1.0
)
[camsi] => Array
(
[species] => camsi
[common_name] => Camellia sinensis var. sinensis
[tax_id] => 542762
[version] => CSS_ChrLev_20200506
)
[cansat] => Array
(
[species] => cansat
[common_name] => Cannabis sativa
[tax_id] => 3483
[version] => cs10
)
[cru] => Array
(
[species] => cru
[common_name] => Capsella rubella
[tax_id] => 81985
[version] => JGI v1.1
)
[can] => Array
(
[species] => can
[common_name] => Capsicum annuum
[tax_id] => 4072
[version] => Pepper Genome v2.0
)
[chi] => Array
(
[species] => chi
[common_name] => Cardamine hirsuta
[tax_id] => 50463
[version] => v1.0
)
[cpa] => Array
(
[species] => cpa
[common_name] => Carica papaya
[tax_id] => 3649
[version] => JGI ASGPB0.4
)
[cfa] => Array
(
[species] => cfa
[common_name] => Carpinus fangiana
[tax_id] => 176857
[version] => v1.0
)
[cil] => Array
(
[species] => cil
[common_name] => Carya illinoinensis
[tax_id] => 32201
[version] => v1.1
)
[cde] => Array
(
[species] => cde
[common_name] => Ceratophyllum demersum
[tax_id] => 4428
[version] => v1.0
)
[cbr] => Array
(
[species] => cbr
[common_name] => Chara braunii
[tax_id] => 69332
[version] => Cbr1.0
)
[cqu] => Array
(
[species] => cqu
[common_name] => Chenopodium quinoa
[tax_id] => 63459
[version] => KAUST v1.0
)
[cre] => Array
(
[species] => cre
[common_name] => Chlamydomonas reinhardtii
[tax_id] => 3055
[version] => JGI v5.5
)
[car] => Array
(
[species] => car
[common_name] => Cicer arietinum L.
[tax_id] => 3827
[version] => v3.0
)
[cla] => Array
(
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[version] => WCG v2.0
)
[ccl] => Array
(
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[common_name] => Citrus clementina
[tax_id] => 85681
[version] => JGI v1.0
)
[ccan] => Array
(
[species] => ccan
[common_name] => Coffea canephora
[tax_id] => 49390
[version] => Coffee Genome Hub v1
)
[col] => Array
(
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[common_name] => Corchorus olitorius
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)
[cav] => Array
(
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[tax_id] => 13451
[version] => v1.0
)
[cme] => Array
(
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[common_name] => Cucumis melo
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[version] => Melonomics v3.6.1
)
[csa] => Array
(
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)
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(
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)
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(
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)
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(
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)
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(
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)
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(
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)
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(
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)
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(
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)
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(
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)
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(
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)
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(
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)
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(
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)
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(
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)
[han] => Array
(
[species] => han
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[version] => r1.2
)
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(
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)
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(
[species] => lsa
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)
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(
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)
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(
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(
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)
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(
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(
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(
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)
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(
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)
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(
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[version] => JGI Mt4.0v1
)
[mco] => Array
(
[species] => mco
[common_name] => Micromonas commoda
[tax_id] => 296587
[version] => JGI v3.0
)
[nnu] => Array
(
[species] => nnu
[common_name] => Nelumbo nucifera
[tax_id] => 4432
[version] => v2.0
)
[nta] => Array
(
[species] => nta
[common_name] => Nicotiana tabacum
[tax_id] => 4097
[version] => Edwards2017
)
[oeu] => Array
(
[species] => oeu
[common_name] => Olea europaea
[tax_id] => 4146
[version] => v1.0
)
[osa] => Array
(
[species] => osa
[common_name] => Oryza sativa ssp. japonica
[tax_id] => 39947
[version] => IRGSP-1.0-2021-05-10
)
[pso] => Array
(
[species] => pso
[common_name] => Papaver somniferum
[tax_id] => 3469
[version] => ASM357369v1
)
[pax] => Array
(
[species] => pax
[common_name] => Petunia axillaris
[tax_id] => 33119
[version] => Sol Genomics v1.6.2
)
[pvu] => Array
(
[species] => pvu
[common_name] => Phaseolus vulgaris
[tax_id] => 3885
[version] => v2.1
)
[ppa] => Array
(
[species] => ppa
[common_name] => Physcomitrium patens
[tax_id] => 3218
[version] => JGI v3.3
)
[psa] => Array
(
[species] => psa
[common_name] => Pisum sativum
[tax_id] => 3888
[version] => V1.0a
)
[ptr] => Array
(
[species] => ptr
[common_name] => Populus trichocarpa
[tax_id] => 3694
[version] => JGI v4.1
)
[pco] => Array
(
[species] => pco
[common_name] => Prasinoderma coloniale
[tax_id] => 156133
[version] => v1.0
)
[ppe] => Array
(
[species] => ppe
[common_name] => Prunus persica
[tax_id] => 3760
[version] => v2.1
)
[pgr] => Array
(
[species] => pgr
[common_name] => Punica granatum
[tax_id] => 22663
[version] => ASM765513v2
)
[qlo] => Array
(
[species] => qlo
[common_name] => Quercus lobata
[tax_id] => 97700
[version] => v3.0
)
[rsi] => Array
(
[species] => rsi
[common_name] => Rhododendron simsii
[tax_id] => 118357
[version] => v1.0
)
[rch] => Array
(
[species] => rch
[common_name] => Rosa chinensis
[tax_id] => 74649
[version] => v2.0
)
[sbr] => Array
(
[species] => sbr
[common_name] => Salix brachista
[tax_id] => 2182728
[version] => v1.0
)
[sbo] => Array
(
[species] => sbo
[common_name] => Salvia bowleyana
[tax_id] => 424416
[version] => v1.0
)
[shi] => Array
(
[species] => shi
[common_name] => Sapria himalayana
[tax_id] => 289637
[version] => v1.0
)
[spa] => Array
(
[species] => spa
[common_name] => Schrenkiella parvula
[tax_id] => 98039
[version] => v2.2
)
[sed] => Array
(
[species] => sed
[common_name] => Sechium edule
[tax_id] => 184140
[version] => v1.0
)
[smo] => Array
(
[species] => smo
[common_name] => Selaginella moellendorffii
[tax_id] => 88036
[version] => v1.0
)
[sun] => Array
(
[species] => sun
[common_name] => Selenicereus undatus
[tax_id] => 176265
[version] => v1.0
)
[sgi] => Array
(
[species] => sgi
[common_name] => Sequoiadendron giganteum
[tax_id] => 99814
[version] => V2.0
)
[sci] => Array
(
[species] => sci
[common_name] => Simmondsia chinensis
[tax_id] => 3999
[version] => sc1
)
[sly] => Array
(
[species] => sly
[common_name] => Solanum lycopersicum
[tax_id] => 4081
[version] => ITAG4.0
)
[spe] => Array
(
[species] => spe
[common_name] => Solanum pennellii
[tax_id] => 28526
[version] => V2.0
)
[stu] => Array
(
[species] => stu
[common_name] => Solanum tuberosum
[tax_id] => 4113
[version] => JGI v4.03
)
[sas] => Array
(
[species] => sas
[common_name] => Striga asiatica
[tax_id] => 4170
[version] => v2.02
)
[tha] => Array
(
[species] => tha
[common_name] => Tarenaya hassleriana
[tax_id] => 28532
[version] => RefSeq v1
)
[tca] => Array
(
[species] => tca
[common_name] => Theobroma cacao
[tax_id] => 3641
[version] => V2.1
)
[tpr] => Array
(
[species] => tpr
[common_name] => Trifolium pratense
[tax_id] => 57577
[version] => V2.0
)
[twi] => Array
(
[species] => twi
[common_name] => Tripterygium wilfordii
[tax_id] => 458696
[version] => ASM1340144v1
)
[tar] => Array
(
[species] => tar
[common_name] => Trochodendron aralioides
[tax_id] => 4407
[version] => v1.0
)
[ugi] => Array
(
[species] => ugi
[common_name] => Utricularia gibba
[tax_id] => 13748
[version] => v1.1F
)
[vma] => Array
(
[species] => vma
[common_name] => Vaccinium macrocarpon
[tax_id] => 13750
[version] => V1.0
)
[vpl] => Array
(
[species] => vpl
[common_name] => Vanilla planifolia
[tax_id] => 51239
[version] => Elo Vpla-A Principal v1.0
)
[vmu] => Array
(
[species] => vmu
[common_name] => Vigna mungo
[tax_id] => 3915
[version] => ASM1342719v1
)
[vvi] => Array
(
[species] => vvi
[common_name] => Vitis vinifera
[tax_id] => 29760
[version] => Genoscope.12x
)
[zma] => Array
(
[species] => zma
[common_name] => Zea mays
[tax_id] => 4577
[version] => NAM v5.0
)
)
[query_species] => bna
[query_gene] => C05p53440
[orthologs_data] => Array
(
[aar] => Array
(
[ORTHO] => Array
(
[0] => Aa31LG6G10820
[1] => Aa31LG6G10620
[2] => Aa31LG6G12100
[3] => Aa31LG4G6600
[4] => Aa31LG6G10490
[5] => Aa31LG6G10580
[6] => Aa31LG7G11450
[7] => Aa31LG6G10730
[8] => Aa31LG4G12370
[9] => Aa31sc55G90
[10] => Aa31LG6G12130
[11] => Aa31LG6G12190
[12] => Aa31LG11G13900
[13] => Aa31LG10G1480
[14] => Aa31LG3G13420
[15] => Aa31LG4G12360
[16] => Aa31LG11G6190
[17] => Aa31LG6G10790
[18] => Aa31LG6G10850
[19] => Aa31LG8G12550
[20] => Aa31sc276G50
[21] => Aa31LG11G6240
[22] => Aa31LG10G4070
[23] => Aa31LG6G10430
[24] => Aa31LG1G6280
[25] => Aa31LG7G12760
[26] => Aa31LG11G14020
[27] => Aa31LG4G12460
[28] => Aa31LG6G12180
[29] => Aa31LG1G19670
[30] => Aa31LG8G1900
[31] => Aa31LG10G10840
[32] => Aa31LG6G10870
[33] => Aa31LG11G6130
[34] => Aa31LG11G6250
[35] => Aa31LG1G6300
[36] => Aa31LG11G6350
[37] => Aa31LG6G12200
[38] => Aa31LG11G13920
[39] => Aa31LG4G10940
[40] => Aa31LG6G10830
[41] => Aa31LG7G12750
[42] => Aa31LG11G9310
[43] => Aa31LG6G12210
[44] => Aa31sc276G10
[45] => Aa31LG6G10520
[46] => Aa31LG6G10700
[47] => Aa31LG6G10650
[48] => Aa31LG2G16680
[49] => Aa31LG6G10890
[50] => Aa31LG6G7100
[51] => Aa31LG6G10660
[52] => Aa31LG6G10670
[53] => Aa31LG4G12470
[54] => Aa31sc194G10
[55] => Aa31LG6G11620
[56] => Aa31sc2656G10
[57] => Aa31LG11G6230
[58] => Aa31LG6G10550
[59] => Aa31LG5G23830
[60] => Aa31LG11G13930
[61] => Aa31LG10G13290
[62] => Aa31LG8G12260
[63] => Aa31LG6G12160
[64] => Aa31LG11G9030
[65] => Aa31LG11G6200
[66] => Aa31LG6G12090
[67] => Aa31LG4G12400
[68] => Aa31LG8G1880
[69] => Aa31sc276G30
[70] => Aa31LG1G6310
[71] => Aa31LG6G10610
[72] => Aa31LG6G10810
[73] => Aa31LG6G10640
[74] => Aa31LG7G10800
[75] => Aa31LG4G9200
[76] => Aa31LG11G13910
[77] => Aa31LG6G10840
[78] => Aa31sc958G20
[79] => Aa31LG7G12730
[80] => Aa31LG4G2970
[81] => Aa31LG6G10680
[82] => Aa31LG6G10760
[83] => Aa31LG6G10690
[84] => Aa31LG11G6320
[85] => Aa31LG6G13320
[86] => Aa31LG6G11610
[87] => Aa31LG5G23860
[88] => Aa31LG7G11320
[89] => Aa31LG4G12440
[90] => Aa31LG7G10810
[91] => Aa31LG6G10630
[92] => Aa31LG5G14770
[93] => Aa31LG6G12260
[94] => Aa31LG4G12430
[95] => Aa31sc276G40
[96] => Aa31LG11G6260
[97] => Aa31LG6G10450
[98] => Aa31LG6G12170
[99] => Aa31LG6G10600
[100] => Aa31LG6G11650
[101] => Aa31LG1G6340
[102] => Aa31LG10G8150
[103] => Aa31LG4G2980
[104] => Aa31LG4G4140
[105] => Aa31LG7G12740
[106] => Aa31LG6G12110
[107] => Aa31LG9G6310
[108] => Aa31LG6G12150
[109] => Aa31LG5G14760
[110] => Aa31LG6G10770
[111] => Aa31LG11G10110
[112] => Aa31LG4G12410
[113] => Aa31LG3G8000
[114] => Aa31LG6G10570
[115] => Aa31sc52G30
[116] => Aa31LG6G12080
[117] => Aa31LG6G10800
[118] => Aa31LG11G10090
[119] => Aa31LG6G7120
[120] => Aa31LG6G10880
[121] => Aa31LG6G6520
[122] => Aa31LG6G10920
[123] => Aa31LG7G12900
[124] => Aa31LG11G7810
[125] => Aa31LG5G14750
[126] => Aa31LG1G8150
[127] => Aa31LG1G23370
[128] => Aa31LG5G23850
[129] => Aa31sc503G10
[130] => Aa31LG1G23380
[131] => Aa31LG6G12120
[132] => Aa31LG1G6290
[133] => Aa31LG6G10470
[134] => Aa31LG11G6290
[135] => Aa31LG11G10080
[136] => Aa31LG6G10440
[137] => Aa31LG8G12630
)
[BHIF] => Array
(
[0] => Aa31LG1G23370
)
)
[acertr] => Array
(
[ORTHO] => Array
(
[0] => Atru.chr4.2539
)
[BHIF] => Array
(
[0] => Atru.chr1.2429
)
)
[aly] => Array
(
[ORTHO] => Array
(
[0] => AL5G26410
[1] => AL1G45560
[2] => AL7G33990
[3] => AL5G39170
[4] => AL1G62110
[5] => AL5G29210
[6] => AL1G46280
[7] => AL5G12470
[8] => AL8G26030
[9] => AL5G23680
[10] => AL2G26320
[11] => AL1G45230
[12] => AL4G11240
[13] => AL6G29160
[14] => AL3G47440
[15] => AL6G22480
[16] => AL1G46260
[17] => AL4G14910
[18] => AL4G38870
[19] => AL5G19300
[20] => AL4G38880
[21] => AL6G29150
[22] => AL5G29234
[23] => AL8G39540
[24] => AL7G22270
[25] => AL2G30960
[26] => AL1G44920
[27] => AL1G46630
[28] => AL1G54580
[29] => AL1G53500
[30] => AL1G59130
[31] => AL5G26260
[32] => AL1G61850
[33] => AL2G17240
[34] => AL4G38850
[35] => AL4G44390
[36] => AL3G14700
[37] => AL1G45210
[38] => AL5G32970
[39] => AL1G29270
[40] => AL8G13970
[41] => AL1G45590
[42] => AL1G63830
[43] => AL1G45610
[44] => AL5G12460
[45] => AL6G22600
[46] => AL1G45280
[47] => AL2G30510
[48] => AL678U10020
[49] => AL1G54130
[50] => AL5G16820
[51] => AL6G42950
[52] => AL3G25040
[53] => AL8G25650
[54] => AL1G48130
[55] => AL3G22554
[56] => AL1G45240
[57] => AL2G29700
[58] => AL6G33850
[59] => AL5G32950
[60] => AL2G16580
[61] => AL1G49450
[62] => AL1G45480
[63] => AL3G22290
[64] => AL1G62130
[65] => AL5G26240
[66] => AL1G62500
[67] => AL2G30490
[68] => AL8G39400
[69] => AL2G14020
[70] => AL8G39640
[71] => AL6G26510
[72] => AL3G39250
[73] => AL4G14930
[74] => AL9U11000
[75] => AL1G44860
[76] => AL1G45540
[77] => AL1G51510
[78] => AL1G47320
[79] => AL1G45620
[80] => AL6G33870
[81] => AL5G38280
[82] => AL4G10320
[83] => AL4G27390
[84] => AL1G58610
[85] => AL5G25940
[86] => AL7G10750
[87] => AL3G52280
[88] => AL2G11100
[89] => AL6G33830
[90] => AL1G39220
[91] => AL3G37620
[92] => AL4G35160
[93] => AL8G27960
[94] => AL4G11220
[95] => AL6G25720
[96] => AL3G14710
[97] => AL6G22490
[98] => AL1G45520
[99] => AL1G54860
[100] => AL1G62120
[101] => AL756U10010
[102] => AL4G22300
[103] => AL1G54620
[104] => AL4G11250
[105] => AL5G37880
[106] => AL6G29360
[107] => AL5G29220
[108] => AL3G39220
[109] => AL1G62520
[110] => AL3G47620
[111] => AL1G44400
[112] => AL1G44890
[113] => AL5G29232
[114] => AL3G17170
[115] => AL1G62140
[116] => AL1G46270
[117] => AL1G45550
[118] => AL1G45580
[119] => AL8G27080
[120] => AL3G53950
[121] => AL3G52270
[122] => AL1G33630
[123] => AL2G30980
[124] => AL5G33030
[125] => AL1G51900
[126] => AL1G31740
[127] => AL8G39570
[128] => AL5G29300
[129] => AL1G44930
[130] => AL5G26390
[131] => AL164U10010
[132] => AL1G53100
[133] => AL8G38830
[134] => AL5G33250
[135] => AL5G38040
[136] => AL1G45490
[137] => AL8G27090
[138] => AL5G12480
[139] => AL5G25950
[140] => AL5G33260
[141] => AL1G66270
[142] => AL5G33270
[143] => AL5G12490
[144] => AL1G45470
[145] => AL2G15380
[146] => AL4G16810
[147] => AL1G45570
[148] => AL3G49550
[149] => AL1G45510
[150] => AL247U10040
[151] => AL7G44280
[152] => AL8G43560
[153] => AL5G33220
[154] => AL3G45420
[155] => AL1G53540
[156] => AL8G15550
[157] => AL1G60730
[158] => AL2G30940
[159] => AL1G61860
[160] => AL6G29130
[161] => AL1G54210
[162] => AL1G53520
[163] => AL1G45350
[164] => AL1G45600
[165] => AL5G26270
[166] => AL1G44470
[167] => AL1G45530
[168] => AL1G45290
[169] => AL7G32860
[170] => AL7G45230
[171] => AL4G38860
[172] => AL5G32890
[173] => AL8G39600
[174] => AL5G39160
[175] => AL1G62530
[176] => AL4G31270
[177] => AL1G45300
[178] => AL8G39590
[179] => AL3G14720
[180] => AL6G43880
[181] => AL2G14000
[182] => AL1G39230
[183] => AL9U10990
[184] => AL4G33150
[185] => AL1G45270
[186] => AL2G25510
[187] => AL5G43600
[188] => AL4G27770
[189] => AL6G29140
[190] => AL3G14200
[191] => AL9U11210
)
[BHIF] => Array
(
[0] => AL4G27390
)
)
[aox] => Array
(
[ORTHO] => Array
(
[0] => Aqoxy5G00679
[1] => Aqoxy5G01000
)
[BHIF] => Array
(
[0] => Aqoxy5G01000
)
)
[ath] => Array
(
[ORTHO] => Array
(
[0] => AT1G30790
[1] => AT1G50880
[2] => AT1G48060
[3] => AT1G59675
[4] => AT1G46912
[5] => AT1G30920
[6] => AT2G32470
[7] => AT1G47810
[8] => AT4G13060
[9] => AT1G70970
[10] => AT1G47790
[11] => AT2G31470
[12] => AT1G53815
[13] => AT1G70390
[14] => AT1G70960
[15] => AT2G02660
[16] => AT4G19930
[17] => AT3G10790
[18] => AT1G53370
[19] => AT5G62510
[20] => AT1G47340
[21] => AT5G22791
[22] => AT4G21240
[23] => AT3G52330
[24] => AT1G55947
[25] => AT3G47150
[26] => AT2G40920
[27] => AT3G52320
[28] => AT1G46984
[29] => AT3G47130
[30] => AT4G11590
[31] => AT2G16450
[32] => AT3G47020
[33] => AT3G04660
[34] => AT1G47350
[35] => AT1G53550
[36] => AT3G56670
[37] => AT2G13630
[38] => AT1G67130
[39] => AT5G50220
[40] => AT1G53790
[41] => AT2G16220
[42] => AT5G42430
[43] => AT4G29970
[44] => AT2G19630
[45] => AT1G76830
[46] => AT5G15670
[47] => AT1G43005
[48] => AT4G19940
[49] => AT1G71290
[50] => AT5G15660
[51] => AT5G18160
[52] => AT5G62060
[53] => AT3G47140
[54] => AT1G26510
[55] => AT3G57590
[56] => AT1G30930
[57] => AT5G62660
[58] => AT3G49440
[59] => AT1G31090
[60] => AT1G61060
[61] => AT1G47730
[62] => AT1G50870
[63] => AT3G23960
[64] => AT5G52610
[65] => AT1G31080
[66] => AT2G23160
[67] => AT2G02890
[68] => AT1G52490
[69] => AT3G47030
[70] => AT1G19160
[71] => AT1G33010
[72] => AT1G60370
[73] => AT1G47300
[74] => AT1G47765
[75] => AT5G52620
[76] => AT5G38810
[77] => AT2G40925
[78] => AT3G10990
[79] => AT5G43550
[80] => AT3G57580
[81] => AT1G31000
[82] => AT5G65850
[83] => AT1G52495
[84] => AT1G46840
[85] => AT1G31163
[86] => AT5G44220
[87] => AT4G38870
[88] => AT2G33705
[89] => AT4G09190
[90] => AT1G47800
[91] => AT3G49450
[92] => AT2G15640
[93] => AT1G32660
[94] => AT3G52510
[95] => AT1G53360
[96] => AT3G61340
[97] => AT2G40910
[98] => AT1G26515
[99] => AT2G16810
[100] => AT5G44345
[101] => AT1G33020
[102] => AT1G32420
[103] => AT2G21930
[104] => AT1G70380
[105] => AT3G56890
[106] => AT1G55070
[107] => AT3G10240
[108] => AT1G30925
[109] => AT3G06280
)
[BHIF] => Array
(
[0] => AT3G23960
)
)
[bca] => Array
(
[ORTHO] => Array
(
[0] => BcaC03g14814
[1] => BcaC03g14813
[2] => BcaB05g21705
[3] => BcaB06g27364
[4] => BcaC04g22437
[5] => BcaNung02553
[6] => BcaNung05190
[7] => BcaB06g28578
[8] => BcaC05g30178
[9] => BcaB06g26495
[10] => BcaB04g21056
[11] => BcaC05g28010
[12] => BcaB05g25188
[13] => BcaC02g08267
[14] => BcaNung06398
[15] => BcaB04g21422
[16] => BcaB08g34490
[17] => BcaB06g26388
[18] => BcaC04g18942
[19] => BcaB08g36894
[20] => BcaC08g43262
[21] => BcaB02g09153
[22] => BcaB02g08397
[23] => BcaC06g36671
[24] => BcaB04g21350
[25] => BcaNung03037
[26] => BcaB01g00375
[27] => BcaB05g24243
[28] => BcaC02g07989
[29] => BcaC05g26608
[30] => BcaB01g03998
[31] => BcaB01g03310
[32] => BcaC05g30252
[33] => BcaC02g07990
[34] => BcaB06g26402
[35] => BcaC05g26537
[36] => BcaC01g06476
[37] => BcaC02g08701
[38] => BcaB06g28423
[39] => BcaC03g13526
[40] => BcaB01g00207
[41] => BcaB07g33525
[42] => BcaB01g03057
[43] => BcaNung03087
[44] => BcaC05g30241
[45] => BcaC04g22270
[46] => BcaB02g09154
[47] => BcaB01g05254
[48] => BcaNung02196
[49] => BcaB06g28593
[50] => BcaC03g18156
[51] => BcaB04g21067
[52] => BcaB06g28667
[53] => BcaB03g13759
[54] => BcaB07g32774
[55] => BcaB04g16928
[56] => BcaB01g03958
[57] => BcaC02g07931
[58] => BcaC06g33384
[59] => BcaC09g47784
[60] => BcaC04g20172
[61] => BcaB08g36406
[62] => BcaB07g33529
[63] => BcaB02g11190
[64] => BcaC02g07628
[65] => BcaB01g00705
[66] => BcaB02g10631
[67] => BcaC07g39412
[68] => BcaB08g37182
[69] => BcaC07g38925
[70] => BcaC05g28418
[71] => BcaC01g00261
[72] => BcaC02g07111
[73] => BcaB06g26046
[74] => BcaB01g04693
[75] => BcaB04g21337
[76] => BcaB02g10924
[77] => BcaC08g43260
[78] => BcaB08g36954
[79] => BcaB07g30684
[80] => BcaB07g32775
[81] => BcaB05g21645
[82] => BcaB08g36892
[83] => BcaB02g07033
[84] => BcaC02g07930
[85] => BcaC09g48467
[86] => BcaB02g09590
[87] => BcaB01g00377
[88] => BcaC03g15047
[89] => BcaB03g11651
[90] => BcaC02g07940
[91] => BcaB06g28548
[92] => BcaB08g34488
[93] => BcaB05g21571
[94] => BcaC03g13916
[95] => BcaB05g21647
[96] => BcaNung06828
[97] => BcaB03g11646
[98] => BcaC07g37220
[99] => BcaB03g15795
[100] => BcaB01g00942
[101] => BcaB06g28125
[102] => BcaC02g10524
[103] => BcaB06g28592
[104] => BcaC04g22839
[105] => BcaB06g27796
[106] => BcaC08g44127
[107] => BcaB01g04750
[108] => BcaB02g10412
[109] => BcaB06g28126
[110] => BcaNung00927
[111] => BcaC06g32280
[112] => BcaC08g46210
[113] => BcaC09g47782
[114] => BcaC02g07929
[115] => BcaC08g43654
[116] => BcaB03g12738
[117] => BcaC03g13912
[118] => BcaC07g40197
[119] => BcaC04g19600
[120] => BcaC07g40198
[121] => BcaB02g09798
[122] => BcaB07g32889
[123] => BcaC03g14815
[124] => BcaC02g07817
[125] => BcaB03g13266
[126] => BcaB06g28591
[127] => BcaB04g21352
[128] => BcaB01g03313
[129] => BcaC01g04927
[130] => BcaB01g03312
[131] => BcaNung02552
[132] => BcaB08g35087
[133] => BcaC04g22840
[134] => BcaB01g02296
[135] => BcaB01g03499
[136] => BcaNung05348
[137] => BcaC09g49194
[138] => BcaC01g05919
[139] => BcaC02g07948
[140] => BcaC05g24639
[141] => BcaC06g36593
[142] => BcaB05g21704
[143] => BcaC08g47087
[144] => BcaC01g00017
[145] => BcaB07g33527
[146] => BcaB02g07174
[147] => BcaB01g05923
[148] => BcaC09g47783
[149] => BcaC01g06612
[150] => BcaC01g00644
[151] => BcaC03g18443
[152] => BcaC02g12025
[153] => BcaB01g04749
[154] => BcaB01g05205
[155] => BcaB03g11650
[156] => BcaC03g18442
[157] => BcaC05g26729
[158] => BcaB06g28668
[159] => BcaC03g15049
[160] => BcaC04g18943
[161] => BcaC02g08658
[162] => BcaB03g16785
[163] => BcaC07g40030
[164] => BcaC09g49492
[165] => BcaC01g04723
[166] => BcaC08g43653
[167] => BcaB01g05100
[168] => BcaC04g23280
[169] => BcaC06g30637
[170] => BcaB02g10701
[171] => BcaB05g22694
[172] => BcaB01g00708
[173] => BcaC09g50158
[174] => BcaC05g30223
[175] => BcaB06g28545
[176] => BcaB02g09678
[177] => BcaC02g07932
[178] => BcaB08g34489
[179] => BcaNung03484
[180] => BcaC01g06613
[181] => BcaC09g47781
[182] => BcaC08g43649
[183] => BcaB03g11726
[184] => BcaC01g00058
[185] => BcaB07g29855
[186] => BcaC05g29942
[187] => BcaC07g40211
[188] => BcaB06g28549
[189] => BcaC04g22265
[190] => BcaC04g23284
[191] => BcaC05g26731
[192] => BcaC07g41051
[193] => BcaC08g43809
[194] => BcaC06g31875
[195] => BcaC07g39408
[196] => BcaC08g42944
[197] => BcaB01g02781
[198] => BcaC01g01171
[199] => BcaB07g32881
[200] => BcaB03g13267
[201] => BcaC09g50159
[202] => BcaB01g00383
[203] => BcaC04g19601
[204] => BcaB01g02793
[205] => BcaB07g32880
[206] => BcaC07g37260
[207] => BcaB02g10439
[208] => BcaB01g03501
[209] => BcaB08g36896
[210] => BcaC03g13528
[211] => BcaB05g22702
[212] => BcaC01g00762
[213] => BcaB03g13832
[214] => BcaB05g21572
[215] => BcaC07g40029
[216] => BcaC05g26732
[217] => BcaB07g32138
[218] => BcaB07g33521
[219] => BcaC02g07927
[220] => BcaC04g23384
[221] => BcaB02g10391
[222] => BcaNung05078
[223] => BcaB03g15153
[224] => BcaC03g15472
[225] => BcaB01g04692
[226] => BcaC04g19915
[227] => BcaC09g48535
[228] => BcaC06g35480
[229] => BcaC04g22264
[230] => BcaB05g24245
[231] => BcaB06g28916
[232] => BcaC05g27390
[233] => BcaNung02315
[234] => BcaC01g00761
[235] => BcaB03g12104
[236] => BcaB07g32429
[237] => BcaB06g28544
[238] => BcaC01g01326
[239] => BcaC01g05920
[240] => BcaB07g30685
[241] => BcaC03g15048
[242] => BcaC07g40028
[243] => BcaB06g26357
[244] => BcaC05g27918
[245] => BcaC06g35792
[246] => BcaB07g33524
[247] => BcaB04g19960
[248] => BcaB01g03500
[249] => BcaC01g01391
[250] => BcaC05g28009
[251] => BcaC02g07953
[252] => BcaC04g23380
[253] => BcaB04g21336
[254] => BcaC09g51162
[255] => BcaC06g30636
[256] => BcaC09g50888
[257] => BcaC02g08657
[258] => BcaC07g38624
[259] => BcaB06g28421
[260] => BcaB06g28579
[261] => BcaB05g24068
[262] => BcaC01g05368
[263] => BcaB01g00382
[264] => BcaC03g15046
[265] => BcaC02g07924
[266] => BcaC09g50641
[267] => BcaNung06152
[268] => BcaB04g19959
[269] => BcaB02g10437
[270] => BcaC07g38647
[271] => BcaC05g26477
[272] => BcaNung02197
[273] => BcaC07g36959
[274] => BcaNung02780
[275] => BcaNung05889
[276] => BcaB04g19992
[277] => BcaB04g21351
[278] => BcaC05g29941
[279] => BcaC05g26056
[280] => BcaB01g02794
[281] => BcaC09g51689
[282] => BcaB01g03496
[283] => BcaC01g05366
[284] => BcaNung05623
[285] => BcaB03g15211
[286] => BcaC03g18161
[287] => BcaB01g03959
[288] => BcaC01g01564
[289] => BcaC02g11318
[290] => BcaB07g33843
[291] => BcaC01g00059
[292] => BcaC01g04937
)
[BHIF] => Array
(
[0] => BcaB06g28592
[1] => BcaC02g07932
)
)
[bna] => Array
(
[ORTHO] => Array
(
[0] => A04p24820
[1] => C05p61040
[2] => C01p23570
[3] => A04p24680
[4] => C04p60610
[5] => C04p18520
[6] => A08p05700
[7] => C09p61460
[8] => C07p05620
[9] => C03p32010
[10] => C06p06060
[11] => A03p06730
[12] => A05p13530
[13] => C09p18760
[14] => C04p61570
[15] => C08p18760
[16] => A10p01120
[17] => C08p14200
[18] => C02p09190
[19] => C04p61040
[20] => C03p84150
[21] => A04p24860
[22] => A04p16510
[23] => A07p00660
[24] => A05p18880
[25] => A02p18970
[26] => A08p33570
[27] => C01p35970
[28] => C05p01800
[29] => C03p34440
[30] => C07p05640
[31] => C05p20360
[32] => C05p53440
[33] => C03p02300
[34] => C03p23010
[35] => C09p10210
[36] => C09p61400
[37] => C02p15560
[38] => C03p21070
[39] => A05p24920
[40] => C02p11270
[41] => C04p17610
[42] => C01p37110
[43] => A10p01760
[44] => C04p61870
[45] => A07p32590
[46] => A04p25790
[47] => A03p26650
[48] => C04p51580
[49] => C09p61410
[50] => C05p02780
[51] => C03p75150
[52] => C02p62260
[53] => A08p00330
[54] => A03p18040
[55] => C04p61620
[56] => C04p17930
[57] => C04p08820
[58] => A05p14170
[59] => A05p14140
[60] => A03p10900
[61] => C09p08970
[62] => A09p38230
[63] => A04p20710
[64] => C04p61910
[65] => C05p40240
[66] => C03p58590
[67] => C04p56550
[68] => A09p45340
[69] => C06p15340
[70] => C04p61790
[71] => C07p01480
[72] => C03p12110
[73] => C04p18060
[74] => A10p30650
[75] => C03p75240
[76] => A10p23320
[77] => C03p84030
[78] => C04p18530
[79] => C04p61650
[80] => A04p24830
[81] => C03p89290
[82] => A04p34150
[83] => C06p14150
[84] => C06p43070
[85] => C05p33250
[86] => A08p25780
[87] => A08p01570
[88] => A07p07350
[89] => A05p13490
[90] => C05p01150
[91] => C03p07750
[92] => C04p38500
[93] => C08p40540
[94] => C03p65570
[95] => C04p61080
[96] => C04p17900
[97] => A04p24850
[98] => C08p06400
[99] => C07p46920
[100] => C03p84020
[101] => A10p18200
[102] => A09p32380
[103] => A01p13760
[104] => C06p10670
[105] => C03p65580
[106] => C04p71950
[107] => A09p38690
[108] => A09p45420
[109] => A02p04340
[110] => C04p61720
[111] => C05p38740
[112] => A10p03020
[113] => C03p84140
[114] => A07p01260
[115] => A09p37850
[116] => C04p18500
[117] => A04p20720
[118] => A03p18030
[119] => C03p91520
[120] => C01p16670
[121] => C02p11230
[122] => C04p60620
[123] => A01p12880
[124] => C09p19320
[125] => C01p41610
[126] => A10p00830
[127] => C09p67730
[128] => C05p20350
[129] => C06p43060
[130] => A05p29800
[131] => A04p24920
[132] => C04p61810
[133] => C09p71120
[134] => C08p24480
[135] => C01p28330
[136] => A03p08390
[137] => A04p24910
[138] => A03p18930
[139] => C09p47030
[140] => C09p21460
[141] => A10p24780
[142] => C04p14920
[143] => A08p15640
[144] => C06p10710
[145] => A05p43010
[146] => C07p02550
[147] => C02p22650
[148] => A08p02150
[149] => C04p18490
[150] => C09p61420
[151] => A04p24900
[152] => BNapus_Darmor_BZH_scaffold_38p00410
[153] => C04p17620
[154] => A08p19670
[155] => A02p03160
[156] => C03p34470
[157] => C05p01810
[158] => C04p08810
[159] => A09p57450
[160] => A02p19000
[161] => C04p61580
[162] => C06p15250
[163] => A05p43020
[164] => C04p62150
[165] => C02p09150
[166] => BNapus_Darmor_BZH_scaffold_78p00960
[167] => C06p02070
[168] => A08p15650
[169] => A04p12430
[170] => A04p24670
[171] => A05p13480
[172] => C03p90650
[173] => C02p31520
[174] => C03p27370
[175] => C08p24500
[176] => C06p42080
[177] => A05p07390
[178] => A03p08400
[179] => A10p01810
[180] => A03p48830
[181] => C05p62780
[182] => C07p15590
[183] => C03p84090
[184] => C03p74840
[185] => C09p30990
[186] => C02p62250
[187] => A02p02780
[188] => A03p28520
[189] => A05p13700
[190] => A01p28380
[191] => A09p24100
[192] => C08p00630
[193] => A04p24710
[194] => C09p10160
[195] => C04p46160
[196] => C03p11510
[197] => A05p29820
[198] => C09p08930
[199] => C05p30270
[200] => A05p13520
[201] => A04p24260
[202] => C04p60550
[203] => A06p02840
[204] => A03p06770
[205] => C07p11130
[206] => A10p30640
[207] => A04p16520
[208] => A02p14060
[209] => C02p07900
[210] => A01p22790
[211] => A08p30330
[212] => A07p03680
[213] => A09p12470
[214] => C05p25940
[215] => C06p01870
[216] => BNapus_Darmor_BZH_scaffold_78p00970
[217] => C07p52590
[218] => C06p21850
[219] => C07p10800
[220] => A06p18280
[221] => A03p18390
[222] => A05p17940
[223] => A03p09940
[224] => A04p05750
[225] => C06p14080
[226] => A07p03320
[227] => C04p61780
[228] => C04p61820
[229] => A03p23050
[230] => C04p38520
[231] => A01p32450
[232] => C03p84110
[233] => C03p93170
[234] => C07p15180
[235] => C03p27380
[236] => A04p24840
[237] => C01p15520
[238] => A09p16070
[239] => C05p44910
[240] => A06p18300
[241] => A02p04320
[242] => C09p14760
[243] => A04p23920
[244] => C02p22670
[245] => A06p28230
[246] => BNapus_Darmor_BZH_scaffold_78p00980
[247] => A04p24790
[248] => C05p26570
[249] => A09p37860
[250] => C08p24470
[251] => C01p28340
[252] => C07p50610
[253] => A05p25840
[254] => C09p71110
[255] => C03p42690
[256] => C01p49450
[257] => BNapus_Darmor_BZH_scaffold_118p00140
[258] => C04p17600
[259] => A02p14050
[260] => A08p23970
[261] => C03p21080
[262] => A01p22770
[263] => C09p53810
[264] => C03p55070
[265] => C03p84010
[266] => A02p18980
[267] => C08p33960
[268] => A07p34430
[269] => C03p21480
[270] => C04p43300
[271] => A04p23910
[272] => A10p06460
[273] => C04p61900
[274] => C04p61590
[275] => C04p46150
[276] => C04p27920
[277] => A02p04330
[278] => C03p27440
[279] => A06p18290
[280] => A05p07370
[281] => C03p09770
[282] => A09p51160
[283] => A05p13510
[284] => C04p17190
[285] => A03p10530
[286] => C02p25910
[287] => A07p09960
[288] => A04p22560
[289] => A03p10910
[290] => A06p31800
[291] => A08p16640
[292] => C03p31920
[293] => A08p25800
[294] => A08p25530
[295] => A05p25180
[296] => A02p04310
[297] => C09p61450
[298] => A07p22900
[299] => C01p28350
[300] => C09p10250
[301] => A09p34040
[302] => C04p61700
[303] => C03p74900
[304] => C04p61010
[305] => C04p61880
[306] => BNapus_Darmor_BZH_scaffold_38p00400
[307] => C07p10820
[308] => A09p35110
[309] => C06p11930
[310] => A03p01930
[311] => C04p61800
[312] => A10p27670
[313] => C03p85530
[314] => C04p17920
[315] => A04p16950
[316] => C04p71220
[317] => C02p07910
[318] => A05p11430
[319] => A09p17250
[320] => A04p33460
[321] => C05p39240
[322] => A03p54230
[323] => C04p61610
[324] => C04p18540
[325] => C03p85560
[326] => C02p07390
[327] => A04p34160
[328] => A05p35260
[329] => A01p38860
[330] => A04p16910
[331] => C04p67690
)
[BHIF] => Array
(
[0] => C05p53440
)
[anchor_point] => Array
(
[0] => A05p35260
)
)
[bol] => Array
(
[ORTHO] => Array
(
[0] => BolC4t23399H
[1] => BolC3t13683H
[2] => BolC3t13466H
[3] => BolC3t19993H
[4] => BolC4t25426H
[5] => BolC3t19776H
[6] => BolC1t03556H
[7] => BolC4t26697H
[8] => BolC2t08668H
[9] => BolC8t50065H
[10] => BolC9t59874H
[11] => BolC9t59875H
[12] => BolC8t49058H
[13] => BolC4t23372H
[14] => BolC7t41548H
[15] => BolC4t27670H
[16] => BolC9t57938H
[17] => BolC8t51624H
[18] => BolC3t21387H
[19] => BolC6t39130H
[20] => BolC3t20689H
[21] => BolC2t07192H
[22] => BolC4t22474H
[23] => BolC2t08418H
[24] => BolC7t45551H
[25] => BolC6t36700H
[26] => BolC9t55051H
[27] => BolC3t21616H
[28] => BolC6t36586H
[29] => BolC9t57553H
[30] => BolC3t19739H
[31] => BolC3t14490H
[32] => BolC3t15534H
[33] => BolC4t23338H
[34] => BolC9t53923H
[35] => BolC4t23403H
[36] => BolC6t39217H
[37] => BolC1t05731H
[38] => BolC9t53783H
[39] => BolC7t45757H
[40] => BolC5t31767H
[41] => BolC9t53806H
[42] => BolC4t23066H
[43] => BolC2t07193H
[44] => BolC3t14534H
[45] => BolC2t08669H
[46] => BolC4t27662H
[47] => BolC5t32766H
[48] => BolC7t45568H
[49] => BolC8t49012H
[50] => BolC4t27998H
[51] => BolC3t15760H
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[150] => Carub.0001s3323
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[168] => Carub.0007s1444
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[176] => Carub.0001s3585
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[180] => Carub.0002s1400
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[182] => Carub.0006s1027
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[187] => Carub.0003s2519
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[191] => Carub.0002s0292
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[193] => Carub.0008s2334
[194] => Carub.0002s0364
[195] => Carub.0001s2013
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[199] => Carub.0004s0787
[200] => Carub.0003s2509
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[206] => Carub.0003s3393
[207] => Carub.0005s1576
[208] => Carub.0004s0535
[209] => Carub.0001s2929
)
[BHIF] => Array
(
[0] => Carub.0004s1365
)
)
[din] => Array
(
[ORTHO] => Array
(
[0] => Dinv38239
[1] => Dinv16551
[2] => Dinv38240
[3] => Dinv16550
[4] => Dinv16552
[5] => Dinv27418
)
[BHIF] => Array
(
[0] => Dinv16551
[1] => Dinv16552
)
)
[dzi] => Array
(
[ORTHO] => Array
(
[0] => Duzib205G1409
)
[BHIF] => Array
(
[0] => Duzib205G1409
)
)
[eca] => Array
(
[ORTHO] => Array
(
[0] => ECA232G4183
)
)
[egr] => Array
(
[ORTHO] => Array
(
[0] => Eucgr.G00214
[1] => Eucgr.G02383
[2] => Eucgr.B03076
[3] => Eucgr.G01515
[4] => Eucgr.B03075
[5] => Eucgr.G00229
[6] => Eucgr.G02384
)
[BHIF] => Array
(
[0] => Eucgr.B03076
[1] => Eucgr.B03075
[2] => Eucgr.G00229
)
)
[esa] => Array
(
[ORTHO] => Array
(
[0] => Thhalv10011008m.g
[1] => Thhalv10002767m.g
[2] => Thhalv10011525m.g
[3] => Thhalv10012093m.g
[4] => Thhalv10027566m.g
[5] => Thhalv10015410m.g
[6] => Thhalv10019719m.g
[7] => Thhalv10005289m.g
[8] => Thhalv10019684m.g
[9] => Thhalv10023891m.g
[10] => Thhalv10016561m.g
[11] => Thhalv10007859m.g
[12] => Thhalv10026790m.g
[13] => Thhalv10003422m.g
[14] => Thhalv10009733m.g
[15] => Thhalv10009643m.g
[16] => Thhalv10007869m.g
[17] => Thhalv10012370m.g
[18] => Thhalv10015249m.g
[19] => Thhalv10015621m.g
[20] => Thhalv10012264m.g
[21] => Thhalv10027600m.g
[22] => Thhalv10011107m.g
[23] => Thhalv10000190m.g
[24] => Thhalv10011009m.g
[25] => Thhalv10023119m.g
[26] => Thhalv10002533m.g
[27] => Thhalv10012324m.g
[28] => Thhalv10009932m.g
[29] => Thhalv10009377m.g
[30] => Thhalv10012114m.g
[31] => Thhalv10019615m.g
[32] => Thhalv10029264m.g
[33] => Thhalv10019461m.g
[34] => Thhalv10002240m.g
[35] => Thhalv10015435m.g
[36] => Thhalv10002880m.g
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[38] => Thhalv10029429m.g
[39] => Thhalv10009326m.g
[40] => Thhalv10009610m.g
[41] => Thhalv10015881m.g
[42] => Thhalv10025406m.g
[43] => Thhalv10011084m.g
[44] => Thhalv10005275m.g
[45] => Thhalv10029478m.g
[46] => Thhalv10010928m.g
[47] => Thhalv10012242m.g
[48] => Thhalv10012279m.g
[49] => Thhalv10009303m.g
[50] => Thhalv10002973m.g
[51] => Thhalv10011962m.g
[52] => Thhalv10011080m.g
[53] => Thhalv10012258m.g
[54] => Thhalv10009628m.g
[55] => Thhalv10027150m.g
[56] => Thhalv10010905m.g
[57] => Thhalv10003391m.g
[58] => Thhalv10024019m.g
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[60] => Thhalv10010895m.g
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[62] => Thhalv10000468m.g
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[74] => Thhalv10015925m.g
[75] => Thhalv10019539m.g
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[77] => Thhalv10012205m.g
[78] => Thhalv10015343m.g
[79] => Thhalv10012176m.g
[80] => Thhalv10008003m.g
[81] => Thhalv10015870m.g
[82] => Thhalv10027194m.g
[83] => Thhalv10000202m.g
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[90] => Thhalv10029487m.g
[91] => Thhalv10009630m.g
[92] => Thhalv10006464m.g
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[95] => Thhalv10003077m.g
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[100] => Thhalv10012025m.g
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[103] => Thhalv10023943m.g
[104] => Thhalv10009344m.g
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[106] => Thhalv10004411m.g
[107] => Thhalv10011954m.g
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[109] => Thhalv10009617m.g
[110] => Thhalv10009752m.g
[111] => Thhalv10012065m.g
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[114] => Thhalv10005381m.g
[115] => Thhalv10009437m.g
[116] => Thhalv10009451m.g
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[118] => Thhalv10025237m.g
[119] => Thhalv10017547m.g
[120] => Thhalv10019504m.g
[121] => Thhalv10009318m.g
[122] => Thhalv10012245m.g
[123] => Thhalv10009934m.g
[124] => Thhalv10028106m.g
[125] => Thhalv10009883m.g
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[127] => Thhalv10009370m.g
[128] => Thhalv10009427m.g
[129] => Thhalv10012281m.g
[130] => Thhalv10011121m.g
[131] => Thhalv10009507m.g
[132] => Thhalv10020859m.g
[133] => Thhalv10005397m.g
[134] => Thhalv10019476m.g
[135] => Thhalv10012180m.g
[136] => Thhalv10022199m.g
[137] => Thhalv10012378m.g
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[139] => Thhalv10028042m.g
[140] => Thhalv10028181m.g
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[145] => Thhalv10023110m.g
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[150] => Thhalv10026850m.g
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[153] => Thhalv10012345m.g
[154] => Thhalv10012059m.g
[155] => Thhalv10012047m.g
[156] => Thhalv10011993m.g
[157] => Thhalv10009454m.g
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[159] => Thhalv10019453m.g
[160] => Thhalv10022001m.g
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[167] => Thhalv10021999m.g
[168] => Thhalv10001134m.g
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[170] => Thhalv10009665m.g
[171] => Thhalv10009603m.g
[172] => Thhalv10012002m.g
[173] => Thhalv10022123m.g
[174] => Thhalv10012082m.g
[175] => Thhalv10003356m.g
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[177] => Thhalv10012341m.g
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[180] => Thhalv10009543m.g
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[182] => Thhalv10012302m.g
[183] => Thhalv10012287m.g
[184] => Thhalv10012379m.g
[185] => Thhalv10009588m.g
)
[BHIF] => Array
(
[0] => Thhalv10019545m.g
)
[anchor_point] => Array
(
[0] => Thhalv10012359m.g
)
)
[han] => Array
(
[ORTHO] => Array
(
[0] => HanXRQChr05g0146471
[1] => HanXRQChr02g0049281
)
[BHIF] => Array
(
[0] => HanXRQChr05g0146471
[1] => HanXRQChr04g0095931
[2] => HanXRQChr05g0146481
[3] => HanXRQChr05g0146491
[4] => HanXRQChr04g0095821
)
)
[lsa] => Array
(
[ORTHO] => Array
(
[0] => Lsat_1_v5_gn_9_65340
)
)
[mes] => Array
(
[ORTHO] => Array
(
[0] => Manes.02G006040
[1] => Manes.11G003000
)
[BHIF] => Array
(
[0] => Manes.11G003000
)
)
[nta] => Array
(
[ORTHO] => Array
(
[0] => Nitab4.5_0000471g0110
[1] => Nitab4.5_0008081g0030
[2] => Nitab4.5_0000471g0120
[3] => Nitab4.5_0005154g0100
[4] => Nitab4.5_0005154g0120
[5] => Nitab4.5_0008081g0010
[6] => Nitab4.5_0005154g0110
[7] => Nitab4.5_0001041g0030
[8] => Nitab4.5_0004010g0110
[9] => Nitab4.5_0000471g0070
)
[BHIF] => Array
(
[0] => Nitab4.5_0005464g0050
[1] => Nitab4.5_0000059g0520
)
)
[pax] => Array
(
[ORTHO] => Array
(
[0] => Peaxi162Scf01567g00009
[1] => Peaxi162Scf00918g00057
[2] => Peaxi162Scf00180g00130
[3] => Peaxi162Scf00811g00221
)
)
[pgr] => Array
(
[ORTHO] => Array
(
[0] => PGR102G1489
[1] => PGR119G0249
[2] => PGR031G1673
[3] => PGR119G1533
[4] => PGR142G3495
[5] => PGR119G0108
[6] => PGR119G2221
[7] => PGR119G1883
)
[BHIF] => Array
(
[0] => PGR119G0249
[1] => PGR119G2221
[2] => PGR119G1883
)
)
[ppe] => Array
(
[ORTHO] => Array
(
[0] => Prupe.6G204200
)
)
[ptr] => Array
(
[ORTHO] => Array
(
[0] => Potri.001G458400
)
[BHIF] => Array
(
[0] => Potri.001G458400
)
)
[rsi] => Array
(
[ORTHO] => Array
(
[0] => Rhsim08G0210600
[1] => Rhsim08G0197100
[2] => RhsimUnG0048800
[3] => Rhsim04G0086800
)
[BHIF] => Array
(
[0] => Rhsim08G0210600
[1] => Rhsim08G0197100
[2] => RhsimUnG0048800
[3] => Rhsim04G0086800
[4] => Rhsim03G0071300
[5] => Rhsim03G0071900
)
)
[sbr] => Array
(
[ORTHO] => Array
(
[0] => Sabra16G0310700
[1] => Sabra15G0099300
[2] => Sabra08G0109000
)
[BHIF] => Array
(
[0] => Sabra16G0310700
)
)
[spa] => Array
(
[ORTHO] => Array
(
[0] => Sp3g00660
[1] => Sp1g05850
[2] => Sp7g24400
[3] => Sp1g34250
[4] => Sp1g09440
[5] => Sp1g37770
[6] => Sp1g34800
[7] => Sp1g27840
[8] => Sp4g23370
[9] => Sp5g12630
[10] => SpUn0074_0030
[11] => Sp1g24400
[12] => Sp5g04230
[13] => Sp1g02140
[14] => Sp7g04870
[15] => Sp6g06960
[16] => Sp1g37610
[17] => Sp6g11610
[18] => Sp1g40720
[19] => Sp6g28450
[20] => Sp3g03510
[21] => Sp7g03190
[22] => Sp3g03500
[23] => Sp3g17210
[24] => Sp1g27310
[25] => Sp5g04240
[26] => Sp3g03160
[27] => Sp7g03180
[28] => Sp1g33140
[29] => Sp4g14420
)
[BHIF] => Array
(
[0] => Sp4g14420
)
)
[stu] => Array
(
[ORTHO] => Array
(
[0] => PGSC0003DMG400043442
[1] => PGSC0003DMG400041815
[2] => PGSC0003DMG400038445
[3] => PGSC0003DMG400043630
[4] => PGSC0003DMG400047266
[5] => PGSC0003DMG400001445
[6] => PGSC0003DMG400041680
[7] => PGSC0003DMG400041967
[8] => PGSC0003DMG400047325
[9] => PGSC0003DMG400023178
[10] => PGSC0003DMG400026777
[11] => PGSC0003DMG400038214
[12] => PGSC0003DMG400025676
[13] => PGSC0003DMG400025675
[14] => PGSC0003DMG400045426
[15] => PGSC0003DMG400036653
[16] => PGSC0003DMG400046934
[17] => PGSC0003DMG400017451
)
[BHIF] => Array
(
[0] => PGSC0003DMG400045426
)
)
[tca] => Array
(
[ORTHO] => Array
(
[0] => Thecc.03G007700
)
[BHIF] => Array
(
[0] => Thecc.03G007700
)
)
[tha] => Array
(
[ORTHO] => Array
(
[0] => THA.LOC104799463
[1] => THA.LOC104799108
[2] => THA.LOC104800494
[3] => THA.LOC104821034
[4] => THA.LOC104805854
[5] => THA.LOC104814678
[6] => THA.LOC104801504
[7] => THA.LOC104821025
)
[BHIF] => Array
(
[0] => THA.LOC104799108
[1] => THA.LOC104821034
[2] => THA.LOC104814678
)
)
[bvu] => Array
(
[BHIF] => Array
(
[0] => EL10As6g23670
)
)
[ccan] => Array
(
[BHIF] => Array
(
[0] => Cc04_g11950
)
)
[cqu] => Array
(
[BHIF] => Array
(
[0] => AUR62005813
)
)
[egut] => Array
(
[BHIF] => Array
(
[0] => Migut.J01047
)
)
[ghi] => Array
(
[BHIF] => Array
(
[0] => Gohir.A10G143700
)
)
[lonja] => Array
(
[BHIF] => Array
(
[0] => Lj2P928T12
[1] => Lj2P943T5
[2] => Lj2P693T12
)
)
[mbi] => Array
(
[BHIF] => Array
(
[0] => MBI15_g33468_MAGBIO
)
)
[pso] => Array
(
[BHIF] => Array
(
[0] => PSO339G4520
[1] => PSO017G4276
)
)
[sed] => Array
(
[BHIF] => Array
(
[0] => Sed0022366
)
)
[tar] => Array
(
[BHIF] => Array
(
[0] => TAR369G0473
)
)
)
[ortholog_types] => Array
(
[TROG] => Array
(
[color] => 1F96D8
[order] => 1
[full_name] => Tree-based ortholog
[linkout] => /genes/gene_redirect/%GENE_ID_X%/hom_tree/
)
[ORTHO] => Array
(
[color] => 1FC610
[order] => 2
[full_name] => Orthologous gene family
[linkout] => /genes/gene_redirect/%GENE_ID_X%/ortho/
)
[anchor_point] => Array
(
[color] => D76414
[order] => 3
[full_name] => Colinearity
[linkout] => /genes/gene_redirect/%GENE_ID_X%/multiplicon/%GENE_ID_Y%/
)
[BHIF] => Array
(
[color] => 960AA0
[order] => 4
[full_name] => Best-Hits-and-Inparalogs(BHI)family
[linkout] => /genes/gene_redirect/%GENE_ID_X%/blast_results
)
)
[title_for_layout] => Dicots PLAZA 5.0 : Integrative Orthology
)
[view] => overview
[layout] => toolbox_layout
[autoRender] => 1
[autoLayout] => 1
[Components] => ComponentCollection Object
(
[_Controller:protected] => OrthologsController Object
*RECURSION*
[_enabled:protected] => Array
(
[Session] => Array
(
[0] => 10
[1] => 1
)
[DataUtils] => Array
(
[0] => 10
[1] => 2
)
[FunctionalAnnotationUtils] => Array
(
[0] => 10
[1] => 3
)
[GeneFamilies] => Array
(
[0] => 10
[1] => 4
)
[Organism] => Array
(
[0] => 10
[1] => 5
)
[Blast] => Array
(
[0] => 10
[1] => 6
)
[WorkbenchUtils] => Array
(
[0] => 10
[1] => 7
)
[Orthology] => Array
(
[0] => 10
[1] => 8
)
)
[_loaded:protected] => Array
(
[Session] => SessionComponent Object
(
[_Collection:protected] => ComponentCollection Object
*RECURSION*
[settings] => Array
(
)
[components] => Array
(
)
[_componentMap:protected] => Array
(
)
)
[DataUtils] => DataUtilsComponent Object
(
[name] => DataUtils
[controller] => OrthologsController Object
*RECURSION*
[components] => Array
(
[0] => ExternalPrograms
[1] => FunctionalUtils
[2] => GeneFamilies
[3] => GenomeBrowser
)
[_Collection:protected] => ComponentCollection Object
*RECURSION*
[settings] => Array
(
)
[_componentMap:protected] => Array
(
[ExternalPrograms] => Array
(
[class] => ExternalPrograms
[settings] => Array
(
)
)
[FunctionalUtils] => Array
(
[class] => FunctionalUtils
[settings] => Array
(
)
)
[GeneFamilies] => Array
(
[class] => GeneFamilies
[settings] => Array
(
)
)
[GenomeBrowser] => Array
(
[class] => GenomeBrowser
[settings] => Array
(
)
)
)
[GeneFamilies] => GeneFamiliesComponent Object
(
[name] => GeneFamilies
[controller:GeneFamiliesComponent:private] => OrthologsController Object
*RECURSION*
[_Collection:protected] => ComponentCollection Object
*RECURSION*
[settings] => Array
(
)
[components] => Array
(
)
[_componentMap:protected] => Array
(
)
)
)
[FunctionalAnnotationUtils] => FunctionalAnnotationUtilsComponent Object
(
[name] => FunctionalAnnotationUtils
[controller] => OrthologsController Object
*RECURSION*
[components] => Array
(
[0] => FunctionalUtils
)
[_Collection:protected] => ComponentCollection Object
*RECURSION*
[settings] => Array
(
)
[_componentMap:protected] => Array
(
[FunctionalUtils] => Array
(
[class] => FunctionalUtils
[settings] => Array
(
)
)
)
)
[GeneFamilies] => GeneFamiliesComponent Object
(
[name] => GeneFamilies
[controller:GeneFamiliesComponent:private] => OrthologsController Object
*RECURSION*
[_Collection:protected] => ComponentCollection Object
*RECURSION*
[settings] => Array
(
)
[components] => Array
(
)
[_componentMap:protected] => Array
(
)
)
[Organism] => OrganismComponent Object
(
[name] => Organism
[controller:OrganismComponent:private] => OrthologsController Object
*RECURSION*
[components] => Array
(
[0] => GenomeBrowser
)
[_Collection:protected] => ComponentCollection Object
*RECURSION*
[settings] => Array
(
)
[_componentMap:protected] => Array
(
[GenomeBrowser] => Array
(
[class] => GenomeBrowser
[settings] => Array
(
)
)
)
)
[Blast] => BlastComponent Object
(
[name] => Blast
[controller] => OrthologsController Object
*RECURSION*
[_Collection:protected] => ComponentCollection Object
*RECURSION*
[settings] => Array
(
)
[components] => Array
(
)
[_componentMap:protected] => Array
(
)
)
[WorkbenchUtils] => WorkbenchUtilsComponent Object
(
[name] => WorkbenchUtils
[controller:WorkbenchUtilsComponent:private] => OrthologsController Object
*RECURSION*
[components] => Array
(
[0] => ExternalPrograms
[1] => FormUtils
[2] => FunctionalUtils
[3] => GeneFamilies
[4] => WorkbenchSharedAccessRights
)
[_Collection:protected] => ComponentCollection Object
*RECURSION*
[settings] => Array
(
)
[_componentMap:protected] => Array
(
[ExternalPrograms] => Array
(
[class] => ExternalPrograms
[settings] => Array
(
)
)
[FormUtils] => Array
(
[class] => FormUtils
[settings] => Array
(
)
)
[FunctionalUtils] => Array
(
[class] => FunctionalUtils
[settings] => Array
(
)
)
[GeneFamilies] => Array
(
[class] => GeneFamilies
[settings] => Array
(
)
)
[WorkbenchSharedAccessRights] => Array
(
[class] => WorkbenchSharedAccessRights
[settings] => Array
(
)
)
)
)
[Orthology] => OrthologyComponent Object
(
[name] => Orthology
[controller:OrthologyComponent:private] => OrthologsController Object
*RECURSION*
[_Collection:protected] => ComponentCollection Object
*RECURSION*
[settings] => Array
(
)
[components] => Array
(
)
[_componentMap:protected] => Array
(
)
)
)
[defaultPriority] => 10
)
[viewClass] => View
[View] =>
[ext] => .ctp
[plugin] =>
[cacheAction] =>
[passedArgs] => Array
(
[0] => C05p53440
)
[scaffold] =>
[methods] => Array
(
[1] => overview
[2] => explore
[3] => get_orthologs_type_data
[4] => get_supporting_data
[5] => get_supporting_type_data
[6] => get_orthologs_data
)
[modelClass] => Annotation
[modelKey] => ortholog
[validationErrors] =>
[_mergeParent:protected] => AppController
[_eventManager:protected] => CakeEventManager Object
(
[_listeners:protected] => Array
(
[Controller.initialize] => Array
(
[10] => Array
(
[0] => Array
(
[callable] => Array
(
[0] => ComponentCollection Object
(
[_Controller:protected] => OrthologsController Object
*RECURSION*
[_enabled:protected] => Array
(
[Session] => Array
(
[0] => 10
[1] => 1
)
[DataUtils] => Array
(
[0] => 10
[1] => 2
)
[FunctionalAnnotationUtils] => Array
(
[0] => 10
[1] => 3
)
[GeneFamilies] => Array
(
[0] => 10
[1] => 4
)
[Organism] => Array
(
[0] => 10
[1] => 5
)
[Blast] => Array
(
[0] => 10
[1] => 6
)
[WorkbenchUtils] => Array
(
[0] => 10
[1] => 7
)
[Orthology] => Array
(
[0] => 10
[1] => 8
)
)
[_loaded:protected] => Array
(
[Session] => SessionComponent Object
(
[_Collection:protected] => ComponentCollection Object
*RECURSION*
[settings] => Array
(
)
[components] => Array
(
)
[_componentMap:protected] => Array
(
)
)
[DataUtils] => DataUtilsComponent Object
(
[name] => DataUtils
[controller] => OrthologsController Object
*RECURSION*
[components] => Array
(
[0] => ExternalPrograms
[1] => FunctionalUtils
[2] => GeneFamilies
[3] => GenomeBrowser
)
[_Collection:protected] => ComponentCollection Object
*RECURSION*
[settings] => Array
(
)
[_componentMap:protected] => Array
(
[ExternalPrograms] => Array
(
[class] => ExternalPrograms
[settings] => Array
(
)
)
[FunctionalUtils] => Array
(
[class] => FunctionalUtils
[settings] => Array
(
)
)
[GeneFamilies] => Array
(
[class] => GeneFamilies
[settings] => Array
(
)
)
[GenomeBrowser] => Array
(
[class] => GenomeBrowser
[settings] => Array
(
)
)
)
[GeneFamilies] => GeneFamiliesComponent Object
(
[name] => GeneFamilies
[controller:GeneFamiliesComponent:private] => OrthologsController Object
*RECURSION*
[_Collection:protected] => ComponentCollection Object
*RECURSION*
[settings] => Array
(
)
[components] => Array
(
)
[_componentMap:protected] => Array
(
)
)
)
[FunctionalAnnotationUtils] => FunctionalAnnotationUtilsComponent Object
(
[name] => FunctionalAnnotationUtils
[controller] => OrthologsController Object
*RECURSION*
[components] => Array
(
[0] => FunctionalUtils
)
[_Collection:protected] => ComponentCollection Object
*RECURSION*
[settings] => Array
(
)
[_componentMap:protected] => Array
(
[FunctionalUtils] => Array
(
[class] => FunctionalUtils
[settings] => Array
(
)
)
)
)
[GeneFamilies] => GeneFamiliesComponent Object
(
[name] => GeneFamilies
[controller:GeneFamiliesComponent:private] => OrthologsController Object
*RECURSION*
[_Collection:protected] => ComponentCollection Object
*RECURSION*
[settings] => Array
(
)
[components] => Array
(
)
[_componentMap:protected] => Array
(
)
)
[Organism] => OrganismComponent Object
(
[name] => Organism
[controller:OrganismComponent:private] => OrthologsController Object
*RECURSION*
[components] => Array
(
[0] => GenomeBrowser
)
[_Collection:protected] => ComponentCollection Object
*RECURSION*
[settings] => Array
(
)
[_componentMap:protected] => Array
(
[GenomeBrowser] => Array
(
[class] => GenomeBrowser
[settings] => Array
(
)
)
)
)
[Blast] => BlastComponent Object
(
[name] => Blast
[controller] => OrthologsController Object
*RECURSION*
[_Collection:protected] => ComponentCollection Object
*RECURSION*
[settings] => Array
(
)
[components] => Array
(
)
[_componentMap:protected] => Array
(
)
)
[WorkbenchUtils] => WorkbenchUtilsComponent Object
(
[name] => WorkbenchUtils
[controller:WorkbenchUtilsComponent:private] => OrthologsController Object
*RECURSION*
[components] => Array
(
[0] => ExternalPrograms
[1] => FormUtils
[2] => FunctionalUtils
[3] => GeneFamilies
[4] => WorkbenchSharedAccessRights
)
[_Collection:protected] => ComponentCollection Object
*RECURSION*
[settings] => Array
(
)
[_componentMap:protected] => Array
(
[ExternalPrograms] => Array
(
[class] => ExternalPrograms
[settings] => Array
(
)
)
[FormUtils] => Array
(
[class] => FormUtils
[settings] => Array
(
)
)
[FunctionalUtils] => Array
(
[class] => FunctionalUtils
[settings] => Array
(
)
)
[GeneFamilies] => Array
(
[class] => GeneFamilies
[settings] => Array
(
)
)
[WorkbenchSharedAccessRights] => Array
(
[class] => WorkbenchSharedAccessRights
[settings] => Array
(
)
)
)
)
[Orthology] => OrthologyComponent Object
(
[name] => Orthology
[controller:OrthologyComponent:private] => OrthologsController Object
*RECURSION*
[_Collection:protected] => ComponentCollection Object
*RECURSION*
[settings] => Array
(
)
[components] => Array
(
)
[_componentMap:protected] => Array
(
)
)
)
[defaultPriority] => 10
)
[1] => trigger
)
[passParams] =>
)
[1] => Array
(
[callable] => Array
(
[0] => OrthologsController Object
*RECURSION*
[1] => beforeFilter
)
[passParams] =>
)
)
)
[Controller.startup] => Array
(
[10] => Array
(
[0] => Array
(
[callable] => Array
(
[0] => ComponentCollection Object
(
[_Controller:protected] => OrthologsController Object
*RECURSION*
[_enabled:protected] => Array
(
[Session] => Array
(
[0] => 10
[1] => 1
)
[DataUtils] => Array
(
[0] => 10
[1] => 2
)
[FunctionalAnnotationUtils] => Array
(
[0] => 10
[1] => 3
)
[GeneFamilies] => Array
(
[0] => 10
[1] => 4
)
[Organism] => Array
(
[0] => 10
[1] => 5
)
[Blast] => Array
(
[0] => 10
[1] => 6
)
[WorkbenchUtils] => Array
(
[0] => 10
[1] => 7
)
[Orthology] => Array
(
[0] => 10
[1] => 8
)
)
[_loaded:protected] => Array
(
[Session] => SessionComponent Object
(
[_Collection:protected] => ComponentCollection Object
*RECURSION*
[settings] => Array
(
)
[components] => Array
(
)
[_componentMap:protected] => Array
(
)
)
[DataUtils] => DataUtilsComponent Object
(
[name] => DataUtils
[controller] => OrthologsController Object
*RECURSION*
[components] => Array
(
[0] => ExternalPrograms
[1] => FunctionalUtils
[2] => GeneFamilies
[3] => GenomeBrowser
)
[_Collection:protected] => ComponentCollection Object
*RECURSION*
[settings] => Array
(
)
[_componentMap:protected] => Array
(
[ExternalPrograms] => Array
(
[class] => ExternalPrograms
[settings] => Array
(
)
)
[FunctionalUtils] => Array
(
[class] => FunctionalUtils
[settings] => Array
(
)
)
[GeneFamilies] => Array
(
[class] => GeneFamilies
[settings] => Array
(
)
)
[GenomeBrowser] => Array
(
[class] => GenomeBrowser
[settings] => Array
(
)
)
)
[GeneFamilies] => GeneFamiliesComponent Object
(
[name] => GeneFamilies
[controller:GeneFamiliesComponent:private] => OrthologsController Object
*RECURSION*
[_Collection:protected] => ComponentCollection Object
*RECURSION*
[settings] => Array
(
)
[components] => Array
(
)
[_componentMap:protected] => Array
(
)
)
)
[FunctionalAnnotationUtils] => FunctionalAnnotationUtilsComponent Object
(
[name] => FunctionalAnnotationUtils
[controller] => OrthologsController Object
*RECURSION*
[components] => Array
(
[0] => FunctionalUtils
)
[_Collection:protected] => ComponentCollection Object
*RECURSION*
[settings] => Array
(
)
[_componentMap:protected] => Array
(
[FunctionalUtils] => Array
(
[class] => FunctionalUtils
[settings] => Array
(
)
)
)
)
[GeneFamilies] => GeneFamiliesComponent Object
(
[name] => GeneFamilies
[controller:GeneFamiliesComponent:private] => OrthologsController Object
*RECURSION*
[_Collection:protected] => ComponentCollection Object
*RECURSION*
[settings] => Array
(
)
[components] => Array
(
)
[_componentMap:protected] => Array
(
)
)
[Organism] => OrganismComponent Object
(
[name] => Organism
[controller:OrganismComponent:private] => OrthologsController Object
*RECURSION*
[components] => Array
(
[0] => GenomeBrowser
)
[_Collection:protected] => ComponentCollection Object
*RECURSION*
[settings] => Array
(
)
[_componentMap:protected] => Array
(
[GenomeBrowser] => Array
(
[class] => GenomeBrowser
[settings] => Array
(
)
)
)
)
[Blast] => BlastComponent Object
(
[name] => Blast
[controller] => OrthologsController Object
*RECURSION*
[_Collection:protected] => ComponentCollection Object
*RECURSION*
[settings] => Array
(
)
[components] => Array
(
)
[_componentMap:protected] => Array
(
)
)
[WorkbenchUtils] => WorkbenchUtilsComponent Object
(
[name] => WorkbenchUtils
[controller:WorkbenchUtilsComponent:private] => OrthologsController Object
*RECURSION*
[components] => Array
(
[0] => ExternalPrograms
[1] => FormUtils
[2] => FunctionalUtils
[3] => GeneFamilies
[4] => WorkbenchSharedAccessRights
)
[_Collection:protected] => ComponentCollection Object
*RECURSION*
[settings] => Array
(
)
[_componentMap:protected] => Array
(
[ExternalPrograms] => Array
(
[class] => ExternalPrograms
[settings] => Array
(
)
)
[FormUtils] => Array
(
[class] => FormUtils
[settings] => Array
(
)
)
[FunctionalUtils] => Array
(
[class] => FunctionalUtils
[settings] => Array
(
)
)
[GeneFamilies] => Array
(
[class] => GeneFamilies
[settings] => Array
(
)
)
[WorkbenchSharedAccessRights] => Array
(
[class] => WorkbenchSharedAccessRights
[settings] => Array
(
)
)
)
)
[Orthology] => OrthologyComponent Object
(
[name] => Orthology
[controller:OrthologyComponent:private] => OrthologsController Object
*RECURSION*
[_Collection:protected] => ComponentCollection Object
*RECURSION*
[settings] => Array
(
)
[components] => Array
(
)
[_componentMap:protected] => Array
(
)
)
)
[defaultPriority] => 10
)
[1] => trigger
)
[passParams] =>
)
)
)
[Controller.beforeRender] => Array
(
[10] => Array
(
[0] => Array
(
[callable] => Array
(
[0] => ComponentCollection Object
(
[_Controller:protected] => OrthologsController Object
*RECURSION*
[_enabled:protected] => Array
(
[Session] => Array
(
[0] => 10
[1] => 1
)
[DataUtils] => Array
(
[0] => 10
[1] => 2
)
[FunctionalAnnotationUtils] => Array
(
[0] => 10
[1] => 3
)
[GeneFamilies] => Array
(
[0] => 10
[1] => 4
)
[Organism] => Array
(
[0] => 10
[1] => 5
)
[Blast] => Array
(
[0] => 10
[1] => 6
)
[WorkbenchUtils] => Array
(
[0] => 10
[1] => 7
)
[Orthology] => Array
(
[0] => 10
[1] => 8
)
)
[_loaded:protected] => Array
(
[Session] => SessionComponent Object
(
[_Collection:protected] => ComponentCollection Object
*RECURSION*
[settings] => Array
(
)
[components] => Array
(
)
[_componentMap:protected] => Array
(
)
)
[DataUtils] => DataUtilsComponent Object
(
[name] => DataUtils
[controller] => OrthologsController Object
*RECURSION*
[components] => Array
(
[0] => ExternalPrograms
[1] => FunctionalUtils
[2] => GeneFamilies
[3] => GenomeBrowser
)
[_Collection:protected] => ComponentCollection Object
*RECURSION*
[settings] => Array
(
)
[_componentMap:protected] => Array
(
[ExternalPrograms] => Array
(
[class] => ExternalPrograms
[settings] => Array
(
)
)
[FunctionalUtils] => Array
(
[class] => FunctionalUtils
[settings] => Array
(
)
)
[GeneFamilies] => Array
(
[class] => GeneFamilies
[settings] => Array
(
)
)
[GenomeBrowser] => Array
(
[class] => GenomeBrowser
[settings] => Array
(
)
)
)
[GeneFamilies] => GeneFamiliesComponent Object
(
[name] => GeneFamilies
[controller:GeneFamiliesComponent:private] => OrthologsController Object
*RECURSION*
[_Collection:protected] => ComponentCollection Object
*RECURSION*
[settings] => Array
(
)
[components] => Array
(
)
[_componentMap:protected] => Array
(
)
)
)
[FunctionalAnnotationUtils] => FunctionalAnnotationUtilsComponent Object
(
[name] => FunctionalAnnotationUtils
[controller] => OrthologsController Object
*RECURSION*
[components] => Array
(
[0] => FunctionalUtils
)
[_Collection:protected] => ComponentCollection Object
*RECURSION*
[settings] => Array
(
)
[_componentMap:protected] => Array
(
[FunctionalUtils] => Array
(
[class] => FunctionalUtils
[settings] => Array
(
)
)
)
)
[GeneFamilies] => GeneFamiliesComponent Object
(
[name] => GeneFamilies
[controller:GeneFamiliesComponent:private] => OrthologsController Object
*RECURSION*
[_Collection:protected] => ComponentCollection Object
*RECURSION*
[settings] => Array
(
)
[components] => Array
(
)
[_componentMap:protected] => Array
(
)
)
[Organism] => OrganismComponent Object
(
[name] => Organism
[controller:OrganismComponent:private] => OrthologsController Object
*RECURSION*
[components] => Array
(
[0] => GenomeBrowser
)
[_Collection:protected] => ComponentCollection Object
*RECURSION*
[settings] => Array
(
)
[_componentMap:protected] => Array
(
[GenomeBrowser] => Array
(
[class] => GenomeBrowser
[settings] => Array
(
)
)
)
)
[Blast] => BlastComponent Object
(
[name] => Blast
[controller] => OrthologsController Object
*RECURSION*
[_Collection:protected] => ComponentCollection Object
*RECURSION*
[settings] => Array
(
)
[components] => Array
(
)
[_componentMap:protected] => Array
(
)
)
[WorkbenchUtils] => WorkbenchUtilsComponent Object
(
[name] => WorkbenchUtils
[controller:WorkbenchUtilsComponent:private] => OrthologsController Object
*RECURSION*
[components] => Array
(
[0] => ExternalPrograms
[1] => FormUtils
[2] => FunctionalUtils
[3] => GeneFamilies
[4] => WorkbenchSharedAccessRights
)
[_Collection:protected] => ComponentCollection Object
*RECURSION*
[settings] => Array
(
)
[_componentMap:protected] => Array
(
[ExternalPrograms] => Array
(
[class] => ExternalPrograms
[settings] => Array
(
)
)
[FormUtils] => Array
(
[class] => FormUtils
[settings] => Array
(
)
)
[FunctionalUtils] => Array
(
[class] => FunctionalUtils
[settings] => Array
(
)
)
[GeneFamilies] => Array
(
[class] => GeneFamilies
[settings] => Array
(
)
)
[WorkbenchSharedAccessRights] => Array
(
[class] => WorkbenchSharedAccessRights
[settings] => Array
(
)
)
)
)
[Orthology] => OrthologyComponent Object
(
[name] => Orthology
[controller:OrthologyComponent:private] => OrthologsController Object
*RECURSION*
[_Collection:protected] => ComponentCollection Object
*RECURSION*
[settings] => Array
(
)
[components] => Array
(
)
[_componentMap:protected] => Array
(
)
)
)
[defaultPriority] => 10
)
[1] => trigger
)
[passParams] =>
)
[1] => Array
(
[callable] => Array
(
[0] => OrthologsController Object
*RECURSION*
[1] => beforeRender
)
[passParams] =>
)
)
)
[Controller.beforeRedirect] => Array
(
[10] => Array
(
[0] => Array
(
[callable] => Array
(
[0] => ComponentCollection Object
(
[_Controller:protected] => OrthologsController Object
*RECURSION*
[_enabled:protected] => Array
(
[Session] => Array
(
[0] => 10
[1] => 1
)
[DataUtils] => Array
(
[0] => 10
[1] => 2
)
[FunctionalAnnotationUtils] => Array
(
[0] => 10
[1] => 3
)
[GeneFamilies] => Array
(
[0] => 10
[1] => 4
)
[Organism] => Array
(
[0] => 10
[1] => 5
)
[Blast] => Array
(
[0] => 10
[1] => 6
)
[WorkbenchUtils] => Array
(
[0] => 10
[1] => 7
)
[Orthology] => Array
(
[0] => 10
[1] => 8
)
)
[_loaded:protected] => Array
(
[Session] => SessionComponent Object
(
[_Collection:protected] => ComponentCollection Object
*RECURSION*
[settings] => Array
(
)
[components] => Array
(
)
[_componentMap:protected] => Array
(
)
)
[DataUtils] => DataUtilsComponent Object
(
[name] => DataUtils
[controller] => OrthologsController Object
*RECURSION*
[components] => Array
(
[0] => ExternalPrograms
[1] => FunctionalUtils
[2] => GeneFamilies
[3] => GenomeBrowser
)
[_Collection:protected] => ComponentCollection Object
*RECURSION*
[settings] => Array
(
)
[_componentMap:protected] => Array
(
[ExternalPrograms] => Array
(
[class] => ExternalPrograms
[settings] => Array
(
)
)
[FunctionalUtils] => Array
(
[class] => FunctionalUtils
[settings] => Array
(
)
)
[GeneFamilies] => Array
(
[class] => GeneFamilies
[settings] => Array
(
)
)
[GenomeBrowser] => Array
(
[class] => GenomeBrowser
[settings] => Array
(
)
)
)
[GeneFamilies] => GeneFamiliesComponent Object
(
[name] => GeneFamilies
[controller:GeneFamiliesComponent:private] => OrthologsController Object
*RECURSION*
[_Collection:protected] => ComponentCollection Object
*RECURSION*
[settings] => Array
(
)
[components] => Array
(
)
[_componentMap:protected] => Array
(
)
)
)
[FunctionalAnnotationUtils] => FunctionalAnnotationUtilsComponent Object
(
[name] => FunctionalAnnotationUtils
[controller] => OrthologsController Object
*RECURSION*
[components] => Array
(
[0] => FunctionalUtils
)
[_Collection:protected] => ComponentCollection Object
*RECURSION*
[settings] => Array
(
)
[_componentMap:protected] => Array
(
[FunctionalUtils] => Array
(
[class] => FunctionalUtils
[settings] => Array
(
)
)
)
)
[GeneFamilies] => GeneFamiliesComponent Object
(
[name] => GeneFamilies
[controller:GeneFamiliesComponent:private] => OrthologsController Object
*RECURSION*
[_Collection:protected] => ComponentCollection Object
*RECURSION*
[settings] => Array
(
)
[components] => Array
(
)
[_componentMap:protected] => Array
(
)
)
[Organism] => OrganismComponent Object
(
[name] => Organism
[controller:OrganismComponent:private] => OrthologsController Object
*RECURSION*
[components] => Array
(
[0] => GenomeBrowser
)
[_Collection:protected] => ComponentCollection Object
*RECURSION*
[settings] => Array
(
)
[_componentMap:protected] => Array
(
[GenomeBrowser] => Array
(
[class] => GenomeBrowser
[settings] => Array
(
)
)
)
)
[Blast] => BlastComponent Object
(
[name] => Blast
[controller] => OrthologsController Object
*RECURSION*
[_Collection:protected] => ComponentCollection Object
*RECURSION*
[settings] => Array
(
)
[components] => Array
(
)
[_componentMap:protected] => Array
(
)
)
[WorkbenchUtils] => WorkbenchUtilsComponent Object
(
[name] => WorkbenchUtils
[controller:WorkbenchUtilsComponent:private] => OrthologsController Object
*RECURSION*
[components] => Array
(
[0] => ExternalPrograms
[1] => FormUtils
[2] => FunctionalUtils
[3] => GeneFamilies
[4] => WorkbenchSharedAccessRights
)
[_Collection:protected] => ComponentCollection Object
*RECURSION*
[settings] => Array
(
)
[_componentMap:protected] => Array
(
[ExternalPrograms] => Array
(
[class] => ExternalPrograms
[settings] => Array
(
)
)
[FormUtils] => Array
(
[class] => FormUtils
[settings] => Array
(
)
)
[FunctionalUtils] => Array
(
[class] => FunctionalUtils
[settings] => Array
(
)
)
[GeneFamilies] => Array
(
[class] => GeneFamilies
[settings] => Array
(
)
)
[WorkbenchSharedAccessRights] => Array
(
[class] => WorkbenchSharedAccessRights
[settings] => Array
(
)
)
)
)
[Orthology] => OrthologyComponent Object
(
[name] => Orthology
[controller:OrthologyComponent:private] => OrthologsController Object
*RECURSION*
[_Collection:protected] => ComponentCollection Object
*RECURSION*
[settings] => Array
(
)
[components] => Array
(
)
[_componentMap:protected] => Array
(
)
)
)
[defaultPriority] => 10
)
[1] => trigger
)
[passParams] =>
)
[1] => Array
(
[callable] => Array
(
[0] => OrthologsController Object
*RECURSION*
[1] => beforeRedirect
)
[passParams] => 1
)
)
)
[Controller.shutdown] => Array
(
[10] => Array
(
[0] => Array
(
[callable] => Array
(
[0] => ComponentCollection Object
(
[_Controller:protected] => OrthologsController Object
*RECURSION*
[_enabled:protected] => Array
(
[Session] => Array
(
[0] => 10
[1] => 1
)
[DataUtils] => Array
(
[0] => 10
[1] => 2
)
[FunctionalAnnotationUtils] => Array
(
[0] => 10
[1] => 3
)
[GeneFamilies] => Array
(
[0] => 10
[1] => 4
)
[Organism] => Array
(
[0] => 10
[1] => 5
)
[Blast] => Array
(
[0] => 10
[1] => 6
)
[WorkbenchUtils] => Array
(
[0] => 10
[1] => 7
)
[Orthology] => Array
(
[0] => 10
[1] => 8
)
)
[_loaded:protected] => Array
(
[Session] => SessionComponent Object
(
[_Collection:protected] => ComponentCollection Object
*RECURSION*
[settings] => Array
(
)
[components] => Array
(
)
[_componentMap:protected] => Array
(
)
)
[DataUtils] => DataUtilsComponent Object
(
[name] => DataUtils
[controller] => OrthologsController Object
*RECURSION*
[components] => Array
(
[0] => ExternalPrograms
[1] => FunctionalUtils
[2] => GeneFamilies
[3] => GenomeBrowser
)
[_Collection:protected] => ComponentCollection Object
*RECURSION*
[settings] => Array
(
)
[_componentMap:protected] => Array
(
[ExternalPrograms] => Array
(
[class] => ExternalPrograms
[settings] => Array
(
)
)
[FunctionalUtils] => Array
(
[class] => FunctionalUtils
[settings] => Array
(
)
)
[GeneFamilies] => Array
(
[class] => GeneFamilies
[settings] => Array
(
)
)
[GenomeBrowser] => Array
(
[class] => GenomeBrowser
[settings] => Array
(
)
)
)
[GeneFamilies] => GeneFamiliesComponent Object
(
[name] => GeneFamilies
[controller:GeneFamiliesComponent:private] => OrthologsController Object
*RECURSION*
[_Collection:protected] => ComponentCollection Object
*RECURSION*
[settings] => Array
(
)
[components] => Array
(
)
[_componentMap:protected] => Array
(
)
)
)
[FunctionalAnnotationUtils] => FunctionalAnnotationUtilsComponent Object
(
[name] => FunctionalAnnotationUtils
[controller] => OrthologsController Object
*RECURSION*
[components] => Array
(
[0] => FunctionalUtils
)
[_Collection:protected] => ComponentCollection Object
*RECURSION*
[settings] => Array
(
)
[_componentMap:protected] => Array
(
[FunctionalUtils] => Array
(
[class] => FunctionalUtils
[settings] => Array
(
)
)
)
)
[GeneFamilies] => GeneFamiliesComponent Object
(
[name] => GeneFamilies
[controller:GeneFamiliesComponent:private] => OrthologsController Object
*RECURSION*
[_Collection:protected] => ComponentCollection Object
*RECURSION*
[settings] => Array
(
)
[components] => Array
(
)
[_componentMap:protected] => Array
(
)
)
[Organism] => OrganismComponent Object
(
[name] => Organism
[controller:OrganismComponent:private] => OrthologsController Object
*RECURSION*
[components] => Array
(
[0] => GenomeBrowser
)
[_Collection:protected] => ComponentCollection Object
*RECURSION*
[settings] => Array
(
)
[_componentMap:protected] => Array
(
[GenomeBrowser] => Array
(
[class] => GenomeBrowser
[settings] => Array
(
)
)
)
)
[Blast] => BlastComponent Object
(
[name] => Blast
[controller] => OrthologsController Object
*RECURSION*
[_Collection:protected] => ComponentCollection Object
*RECURSION*
[settings] => Array
(
)
[components] => Array
(
)
[_componentMap:protected] => Array
(
)
)
[WorkbenchUtils] => WorkbenchUtilsComponent Object
(
[name] => WorkbenchUtils
[controller:WorkbenchUtilsComponent:private] => OrthologsController Object
*RECURSION*
[components] => Array
(
[0] => ExternalPrograms
[1] => FormUtils
[2] => FunctionalUtils
[3] => GeneFamilies
[4] => WorkbenchSharedAccessRights
)
[_Collection:protected] => ComponentCollection Object
*RECURSION*
[settings] => Array
(
)
[_componentMap:protected] => Array
(
[ExternalPrograms] => Array
(
[class] => ExternalPrograms
[settings] => Array
(
)
)
[FormUtils] => Array
(
[class] => FormUtils
[settings] => Array
(
)
)
[FunctionalUtils] => Array
(
[class] => FunctionalUtils
[settings] => Array
(
)
)
[GeneFamilies] => Array
(
[class] => GeneFamilies
[settings] => Array
(
)
)
[WorkbenchSharedAccessRights] => Array
(
[class] => WorkbenchSharedAccessRights
[settings] => Array
(
)
)
)
)
[Orthology] => OrthologyComponent Object
(
[name] => Orthology
[controller:OrthologyComponent:private] => OrthologsController Object
*RECURSION*
[_Collection:protected] => ComponentCollection Object
*RECURSION*
[settings] => Array
(
)
[components] => Array
(
)
[_componentMap:protected] => Array
(
)
)
)
[defaultPriority] => 10
)
[1] => trigger
)
[passParams] =>
)
[1] => Array
(
[callable] => Array
(
[0] => OrthologsController Object
*RECURSION*
[1] => afterFilter
)
[passParams] =>
)
)
)
)
[_isGlobal:protected] =>
)
[Session] => SessionComponent Object
(
[_Collection:protected] => ComponentCollection Object
(
[_Controller:protected] => OrthologsController Object
*RECURSION*
[_enabled:protected] => Array
(
[Session] => Array
(
[0] => 10
[1] => 1
)
[DataUtils] => Array
(
[0] => 10
[1] => 2
)
[FunctionalAnnotationUtils] => Array
(
[0] => 10
[1] => 3
)
[GeneFamilies] => Array
(
[0] => 10
[1] => 4
)
[Organism] => Array
(
[0] => 10
[1] => 5
)
[Blast] => Array
(
[0] => 10
[1] => 6
)
[WorkbenchUtils] => Array
(
[0] => 10
[1] => 7
)
[Orthology] => Array
(
[0] => 10
[1] => 8
)
)
[_loaded:protected] => Array
(
[Session] => SessionComponent Object
*RECURSION*
[DataUtils] => DataUtilsComponent Object
(
[name] => DataUtils
[controller] => OrthologsController Object
*RECURSION*
[components] => Array
(
[0] => ExternalPrograms
[1] => FunctionalUtils
[2] => GeneFamilies
[3] => GenomeBrowser
)
[_Collection:protected] => ComponentCollection Object
*RECURSION*
[settings] => Array
(
)
[_componentMap:protected] => Array
(
[ExternalPrograms] => Array
(
[class] => ExternalPrograms
[settings] => Array
(
)
)
[FunctionalUtils] => Array
(
[class] => FunctionalUtils
[settings] => Array
(
)
)
[GeneFamilies] => Array
(
[class] => GeneFamilies
[settings] => Array
(
)
)
[GenomeBrowser] => Array
(
[class] => GenomeBrowser
[settings] => Array
(
)
)
)
[GeneFamilies] => GeneFamiliesComponent Object
(
[name] => GeneFamilies
[controller:GeneFamiliesComponent:private] => OrthologsController Object
*RECURSION*
[_Collection:protected] => ComponentCollection Object
*RECURSION*
[settings] => Array
(
)
[components] => Array
(
)
[_componentMap:protected] => Array
(
)
)
)
[FunctionalAnnotationUtils] => FunctionalAnnotationUtilsComponent Object
(
[name] => FunctionalAnnotationUtils
[controller] => OrthologsController Object
*RECURSION*
[components] => Array
(
[0] => FunctionalUtils
)
[_Collection:protected] => ComponentCollection Object
*RECURSION*
[settings] => Array
(
)
[_componentMap:protected] => Array
(
[FunctionalUtils] => Array
(
[class] => FunctionalUtils
[settings] => Array
(
)
)
)
)
[GeneFamilies] => GeneFamiliesComponent Object
(
[name] => GeneFamilies
[controller:GeneFamiliesComponent:private] => OrthologsController Object
*RECURSION*
[_Collection:protected] => ComponentCollection Object
*RECURSION*
[settings] => Array
(
)
[components] => Array
(
)
[_componentMap:protected] => Array
(
)
)
[Organism] => OrganismComponent Object
(
[name] => Organism
[controller:OrganismComponent:private] => OrthologsController Object
*RECURSION*
[components] => Array
(
[0] => GenomeBrowser
)
[_Collection:protected] => ComponentCollection Object
*RECURSION*
[settings] => Array
(
)
[_componentMap:protected] => Array
(
[GenomeBrowser] => Array
(
[class] => GenomeBrowser
[settings] => Array
(
)
)
)
)
[Blast] => BlastComponent Object
(
[name] => Blast
[controller] => OrthologsController Object
*RECURSION*
[_Collection:protected] => ComponentCollection Object
*RECURSION*
[settings] => Array
(
)
[components] => Array
(
)
[_componentMap:protected] => Array
(
)
)
[WorkbenchUtils] => WorkbenchUtilsComponent Object
(
[name] => WorkbenchUtils
[controller:WorkbenchUtilsComponent:private] => OrthologsController Object
*RECURSION*
[components] => Array
(
[0] => ExternalPrograms
[1] => FormUtils
[2] => FunctionalUtils
[3] => GeneFamilies
[4] => WorkbenchSharedAccessRights
)
[_Collection:protected] => ComponentCollection Object
*RECURSION*
[settings] => Array
(
)
[_componentMap:protected] => Array
(
[ExternalPrograms] => Array
(
[class] => ExternalPrograms
[settings] => Array
(
)
)
[FormUtils] => Array
(
[class] => FormUtils
[settings] => Array
(
)
)
[FunctionalUtils] => Array
(
[class] => FunctionalUtils
[settings] => Array
(
)
)
[GeneFamilies] => Array
(
[class] => GeneFamilies
[settings] => Array
(
)
)
[WorkbenchSharedAccessRights] => Array
(
[class] => WorkbenchSharedAccessRights
[settings] => Array
(
)
)
)
)
[Orthology] => OrthologyComponent Object
(
[name] => Orthology
[controller:OrthologyComponent:private] => OrthologsController Object
*RECURSION*
[_Collection:protected] => ComponentCollection Object
*RECURSION*
[settings] => Array
(
)
[components] => Array
(
)
[_componentMap:protected] => Array
(
)
)
)
[defaultPriority] => 10
)
[settings] => Array
(
)
[components] => Array
(
)
[_componentMap:protected] => Array
(
)
)
[DataUtils] => DataUtilsComponent Object
(
[name] => DataUtils
[controller] => OrthologsController Object
*RECURSION*
[components] => Array
(
[0] => ExternalPrograms
[1] => FunctionalUtils
[2] => GeneFamilies
[3] => GenomeBrowser
)
[_Collection:protected] => ComponentCollection Object
(
[_Controller:protected] => OrthologsController Object
*RECURSION*
[_enabled:protected] => Array
(
[Session] => Array
(
[0] => 10
[1] => 1
)
[DataUtils] => Array
(
[0] => 10
[1] => 2
)
[FunctionalAnnotationUtils] => Array
(
[0] => 10
[1] => 3
)
[GeneFamilies] => Array
(
[0] => 10
[1] => 4
)
[Organism] => Array
(
[0] => 10
[1] => 5
)
[Blast] => Array
(
[0] => 10
[1] => 6
)
[WorkbenchUtils] => Array
(
[0] => 10
[1] => 7
)
[Orthology] => Array
(
[0] => 10
[1] => 8
)
)
[_loaded:protected] => Array
(
[Session] => SessionComponent Object
(
[_Collection:protected] => ComponentCollection Object
*RECURSION*
[settings] => Array
(
)
[components] => Array
(
)
[_componentMap:protected] => Array
(
)
)
[DataUtils] => DataUtilsComponent Object
*RECURSION*
[FunctionalAnnotationUtils] => FunctionalAnnotationUtilsComponent Object
(
[name] => FunctionalAnnotationUtils
[controller] => OrthologsController Object
*RECURSION*
[components] => Array
(
[0] => FunctionalUtils
)
[_Collection:protected] => ComponentCollection Object
*RECURSION*
[settings] => Array
(
)
[_componentMap:protected] => Array
(
[FunctionalUtils] => Array
(
[class] => FunctionalUtils
[settings] => Array
(
)
)
)
)
[GeneFamilies] => GeneFamiliesComponent Object
(
[name] => GeneFamilies
[controller:GeneFamiliesComponent:private] => OrthologsController Object
*RECURSION*
[_Collection:protected] => ComponentCollection Object
*RECURSION*
[settings] => Array
(
)
[components] => Array
(
)
[_componentMap:protected] => Array
(
)
)
[Organism] => OrganismComponent Object
(
[name] => Organism
[controller:OrganismComponent:private] => OrthologsController Object
*RECURSION*
[components] => Array
(
[0] => GenomeBrowser
)
[_Collection:protected] => ComponentCollection Object
*RECURSION*
[settings] => Array
(
)
[_componentMap:protected] => Array
(
[GenomeBrowser] => Array
(
[class] => GenomeBrowser
[settings] => Array
(
)
)
)
)
[Blast] => BlastComponent Object
(
[name] => Blast
[controller] => OrthologsController Object
*RECURSION*
[_Collection:protected] => ComponentCollection Object
*RECURSION*
[settings] => Array
(
)
[components] => Array
(
)
[_componentMap:protected] => Array
(
)
)
[WorkbenchUtils] => WorkbenchUtilsComponent Object
(
[name] => WorkbenchUtils
[controller:WorkbenchUtilsComponent:private] => OrthologsController Object
*RECURSION*
[components] => Array
(
[0] => ExternalPrograms
[1] => FormUtils
[2] => FunctionalUtils
[3] => GeneFamilies
[4] => WorkbenchSharedAccessRights
)
[_Collection:protected] => ComponentCollection Object
*RECURSION*
[settings] => Array
(
)
[_componentMap:protected] => Array
(
[ExternalPrograms] => Array
(
[class] => ExternalPrograms
[settings] => Array
(
)
)
[FormUtils] => Array
(
[class] => FormUtils
[settings] => Array
(
)
)
[FunctionalUtils] => Array
(
[class] => FunctionalUtils
[settings] => Array
(
)
)
[GeneFamilies] => Array
(
[class] => GeneFamilies
[settings] => Array
(
)
)
[WorkbenchSharedAccessRights] => Array
(
[class] => WorkbenchSharedAccessRights
[settings] => Array
(
)
)
)
)
[Orthology] => OrthologyComponent Object
(
[name] => Orthology
[controller:OrthologyComponent:private] => OrthologsController Object
*RECURSION*
[_Collection:protected] => ComponentCollection Object
*RECURSION*
[settings] => Array
(
)
[components] => Array
(
)
[_componentMap:protected] => Array
(
)
)
)
[defaultPriority] => 10
)
[settings] => Array
(
)
[_componentMap:protected] => Array
(
[ExternalPrograms] => Array
(
[class] => ExternalPrograms
[settings] => Array
(
)
)
[FunctionalUtils] => Array
(
[class] => FunctionalUtils
[settings] => Array
(
)
)
[GeneFamilies] => Array
(
[class] => GeneFamilies
[settings] => Array
(
)
)
[GenomeBrowser] => Array
(
[class] => GenomeBrowser
[settings] => Array
(
)
)
)
[GeneFamilies] => GeneFamiliesComponent Object
(
[name] => GeneFamilies
[controller:GeneFamiliesComponent:private] => OrthologsController Object
*RECURSION*
[_Collection:protected] => ComponentCollection Object
(
[_Controller:protected] => OrthologsController Object
*RECURSION*
[_enabled:protected] => Array
(
[Session] => Array
(
[0] => 10
[1] => 1
)
[DataUtils] => Array
(
[0] => 10
[1] => 2
)
[FunctionalAnnotationUtils] => Array
(
[0] => 10
[1] => 3
)
[GeneFamilies] => Array
(
[0] => 10
[1] => 4
)
[Organism] => Array
(
[0] => 10
[1] => 5
)
[Blast] => Array
(
[0] => 10
[1] => 6
)
[WorkbenchUtils] => Array
(
[0] => 10
[1] => 7
)
[Orthology] => Array
(
[0] => 10
[1] => 8
)
)
[_loaded:protected] => Array
(
[Session] => SessionComponent Object
(
[_Collection:protected] => ComponentCollection Object
*RECURSION*
[settings] => Array
(
)
[components] => Array
(
)
[_componentMap:protected] => Array
(
)
)
[DataUtils] => DataUtilsComponent Object
*RECURSION*
[FunctionalAnnotationUtils] => FunctionalAnnotationUtilsComponent Object
(
[name] => FunctionalAnnotationUtils
[controller] => OrthologsController Object
*RECURSION*
[components] => Array
(
[0] => FunctionalUtils
)
[_Collection:protected] => ComponentCollection Object
*RECURSION*
[settings] => Array
(
)
[_componentMap:protected] => Array
(
[FunctionalUtils] => Array
(
[class] => FunctionalUtils
[settings] => Array
(
)
)
)
)
[GeneFamilies] => GeneFamiliesComponent Object
*RECURSION*
[Organism] => OrganismComponent Object
(
[name] => Organism
[controller:OrganismComponent:private] => OrthologsController Object
*RECURSION*
[components] => Array
(
[0] => GenomeBrowser
)
[_Collection:protected] => ComponentCollection Object
*RECURSION*
[settings] => Array
(
)
[_componentMap:protected] => Array
(
[GenomeBrowser] => Array
(
[class] => GenomeBrowser
[settings] => Array
(
)
)
)
)
[Blast] => BlastComponent Object
(
[name] => Blast
[controller] => OrthologsController Object
*RECURSION*
[_Collection:protected] => ComponentCollection Object
*RECURSION*
[settings] => Array
(
)
[components] => Array
(
)
[_componentMap:protected] => Array
(
)
)
[WorkbenchUtils] => WorkbenchUtilsComponent Object
(
[name] => WorkbenchUtils
[controller:WorkbenchUtilsComponent:private] => OrthologsController Object
*RECURSION*
[components] => Array
(
[0] => ExternalPrograms
[1] => FormUtils
[2] => FunctionalUtils
[3] => GeneFamilies
[4] => WorkbenchSharedAccessRights
)
[_Collection:protected] => ComponentCollection Object
*RECURSION*
[settings] => Array
(
)
[_componentMap:protected] => Array
(
[ExternalPrograms] => Array
(
[class] => ExternalPrograms
[settings] => Array
(
)
)
[FormUtils] => Array
(
[class] => FormUtils
[settings] => Array
(
)
)
[FunctionalUtils] => Array
(
[class] => FunctionalUtils
[settings] => Array
(
)
)
[GeneFamilies] => Array
(
[class] => GeneFamilies
[settings] => Array
(
)
)
[WorkbenchSharedAccessRights] => Array
(
[class] => WorkbenchSharedAccessRights
[settings] => Array
(
)
)
)
)
[Orthology] => OrthologyComponent Object
(
[name] => Orthology
[controller:OrthologyComponent:private] => OrthologsController Object
*RECURSION*
[_Collection:protected] => ComponentCollection Object
*RECURSION*
[settings] => Array
(
)
[components] => Array
(
)
[_componentMap:protected] => Array
(
)
)
)
[defaultPriority] => 10
)
[settings] => Array
(
)
[components] => Array
(
)
[_componentMap:protected] => Array
(
)
)
)
[FunctionalAnnotationUtils] => FunctionalAnnotationUtilsComponent Object
(
[name] => FunctionalAnnotationUtils
[controller] => OrthologsController Object
*RECURSION*
[components] => Array
(
[0] => FunctionalUtils
)
[_Collection:protected] => ComponentCollection Object
(
[_Controller:protected] => OrthologsController Object
*RECURSION*
[_enabled:protected] => Array
(
[Session] => Array
(
[0] => 10
[1] => 1
)
[DataUtils] => Array
(
[0] => 10
[1] => 2
)
[FunctionalAnnotationUtils] => Array
(
[0] => 10
[1] => 3
)
[GeneFamilies] => Array
(
[0] => 10
[1] => 4
)
[Organism] => Array
(
[0] => 10
[1] => 5
)
[Blast] => Array
(
[0] => 10
[1] => 6
)
[WorkbenchUtils] => Array
(
[0] => 10
[1] => 7
)
[Orthology] => Array
(
[0] => 10
[1] => 8
)
)
[_loaded:protected] => Array
(
[Session] => SessionComponent Object
(
[_Collection:protected] => ComponentCollection Object
*RECURSION*
[settings] => Array
(
)
[components] => Array
(
)
[_componentMap:protected] => Array
(
)
)
[DataUtils] => DataUtilsComponent Object
(
[name] => DataUtils
[controller] => OrthologsController Object
*RECURSION*
[components] => Array
(
[0] => ExternalPrograms
[1] => FunctionalUtils
[2] => GeneFamilies
[3] => GenomeBrowser
)
[_Collection:protected] => ComponentCollection Object
*RECURSION*
[settings] => Array
(
)
[_componentMap:protected] => Array
(
[ExternalPrograms] => Array
(
[class] => ExternalPrograms
[settings] => Array
(
)
)
[FunctionalUtils] => Array
(
[class] => FunctionalUtils
[settings] => Array
(
)
)
[GeneFamilies] => Array
(
[class] => GeneFamilies
[settings] => Array
(
)
)
[GenomeBrowser] => Array
(
[class] => GenomeBrowser
[settings] => Array
(
)
)
)
[GeneFamilies] => GeneFamiliesComponent Object
(
[name] => GeneFamilies
[controller:GeneFamiliesComponent:private] => OrthologsController Object
*RECURSION*
[_Collection:protected] => ComponentCollection Object
*RECURSION*
[settings] => Array
(
)
[components] => Array
(
)
[_componentMap:protected] => Array
(
)
)
)
[FunctionalAnnotationUtils] => FunctionalAnnotationUtilsComponent Object
*RECURSION*
[GeneFamilies] => GeneFamiliesComponent Object
(
[name] => GeneFamilies
[controller:GeneFamiliesComponent:private] => OrthologsController Object
*RECURSION*
[_Collection:protected] => ComponentCollection Object
*RECURSION*
[settings] => Array
(
)
[components] => Array
(
)
[_componentMap:protected] => Array
(
)
)
[Organism] => OrganismComponent Object
(
[name] => Organism
[controller:OrganismComponent:private] => OrthologsController Object
*RECURSION*
[components] => Array
(
[0] => GenomeBrowser
)
[_Collection:protected] => ComponentCollection Object
*RECURSION*
[settings] => Array
(
)
[_componentMap:protected] => Array
(
[GenomeBrowser] => Array
(
[class] => GenomeBrowser
[settings] => Array
(
)
)
)
)
[Blast] => BlastComponent Object
(
[name] => Blast
[controller] => OrthologsController Object
*RECURSION*
[_Collection:protected] => ComponentCollection Object
*RECURSION*
[settings] => Array
(
)
[components] => Array
(
)
[_componentMap:protected] => Array
(
)
)
[WorkbenchUtils] => WorkbenchUtilsComponent Object
(
[name] => WorkbenchUtils
[controller:WorkbenchUtilsComponent:private] => OrthologsController Object
*RECURSION*
[components] => Array
(
[0] => ExternalPrograms
[1] => FormUtils
[2] => FunctionalUtils
[3] => GeneFamilies
[4] => WorkbenchSharedAccessRights
)
[_Collection:protected] => ComponentCollection Object
*RECURSION*
[settings] => Array
(
)
[_componentMap:protected] => Array
(
[ExternalPrograms] => Array
(
[class] => ExternalPrograms
[settings] => Array
(
)
)
[FormUtils] => Array
(
[class] => FormUtils
[settings] => Array
(
)
)
[FunctionalUtils] => Array
(
[class] => FunctionalUtils
[settings] => Array
(
)
)
[GeneFamilies] => Array
(
[class] => GeneFamilies
[settings] => Array
(
)
)
[WorkbenchSharedAccessRights] => Array
(
[class] => WorkbenchSharedAccessRights
[settings] => Array
(
)
)
)
)
[Orthology] => OrthologyComponent Object
(
[name] => Orthology
[controller:OrthologyComponent:private] => OrthologsController Object
*RECURSION*
[_Collection:protected] => ComponentCollection Object
*RECURSION*
[settings] => Array
(
)
[components] => Array
(
)
[_componentMap:protected] => Array
(
)
)
)
[defaultPriority] => 10
)
[settings] => Array
(
)
[_componentMap:protected] => Array
(
[FunctionalUtils] => Array
(
[class] => FunctionalUtils
[settings] => Array
(
)
)
)
)
[GeneFamilies] => GeneFamiliesComponent Object
(
[name] => GeneFamilies
[controller:GeneFamiliesComponent:private] => OrthologsController Object
*RECURSION*
[_Collection:protected] => ComponentCollection Object
(
[_Controller:protected] => OrthologsController Object
*RECURSION*
[_enabled:protected] => Array
(
[Session] => Array
(
[0] => 10
[1] => 1
)
[DataUtils] => Array
(
[0] => 10
[1] => 2
)
[FunctionalAnnotationUtils] => Array
(
[0] => 10
[1] => 3
)
[GeneFamilies] => Array
(
[0] => 10
[1] => 4
)
[Organism] => Array
(
[0] => 10
[1] => 5
)
[Blast] => Array
(
[0] => 10
[1] => 6
)
[WorkbenchUtils] => Array
(
[0] => 10
[1] => 7
)
[Orthology] => Array
(
[0] => 10
[1] => 8
)
)
[_loaded:protected] => Array
(
[Session] => SessionComponent Object
(
[_Collection:protected] => ComponentCollection Object
*RECURSION*
[settings] => Array
(
)
[components] => Array
(
)
[_componentMap:protected] => Array
(
)
)
[DataUtils] => DataUtilsComponent Object
(
[name] => DataUtils
[controller] => OrthologsController Object
*RECURSION*
[components] => Array
(
[0] => ExternalPrograms
[1] => FunctionalUtils
[2] => GeneFamilies
[3] => GenomeBrowser
)
[_Collection:protected] => ComponentCollection Object
*RECURSION*
[settings] => Array
(
)
[_componentMap:protected] => Array
(
[ExternalPrograms] => Array
(
[class] => ExternalPrograms
[settings] => Array
(
)
)
[FunctionalUtils] => Array
(
[class] => FunctionalUtils
[settings] => Array
(
)
)
[GeneFamilies] => Array
(
[class] => GeneFamilies
[settings] => Array
(
)
)
[GenomeBrowser] => Array
(
[class] => GenomeBrowser
[settings] => Array
(
)
)
)
[GeneFamilies] => GeneFamiliesComponent Object
*RECURSION*
)
[FunctionalAnnotationUtils] => FunctionalAnnotationUtilsComponent Object
(
[name] => FunctionalAnnotationUtils
[controller] => OrthologsController Object
*RECURSION*
[components] => Array
(
[0] => FunctionalUtils
)
[_Collection:protected] => ComponentCollection Object
*RECURSION*
[settings] => Array
(
)
[_componentMap:protected] => Array
(
[FunctionalUtils] => Array
(
[class] => FunctionalUtils
[settings] => Array
(
)
)
)
)
[GeneFamilies] => GeneFamiliesComponent Object
*RECURSION*
[Organism] => OrganismComponent Object
(
[name] => Organism
[controller:OrganismComponent:private] => OrthologsController Object
*RECURSION*
[components] => Array
(
[0] => GenomeBrowser
)
[_Collection:protected] => ComponentCollection Object
*RECURSION*
[settings] => Array
(
)
[_componentMap:protected] => Array
(
[GenomeBrowser] => Array
(
[class] => GenomeBrowser
[settings] => Array
(
)
)
)
)
[Blast] => BlastComponent Object
(
[name] => Blast
[controller] => OrthologsController Object
*RECURSION*
[_Collection:protected] => ComponentCollection Object
*RECURSION*
[settings] => Array
(
)
[components] => Array
(
)
[_componentMap:protected] => Array
(
)
)
[WorkbenchUtils] => WorkbenchUtilsComponent Object
(
[name] => WorkbenchUtils
[controller:WorkbenchUtilsComponent:private] => OrthologsController Object
*RECURSION*
[components] => Array
(
[0] => ExternalPrograms
[1] => FormUtils
[2] => FunctionalUtils
[3] => GeneFamilies
[4] => WorkbenchSharedAccessRights
)
[_Collection:protected] => ComponentCollection Object
*RECURSION*
[settings] => Array
(
)
[_componentMap:protected] => Array
(
[ExternalPrograms] => Array
(
[class] => ExternalPrograms
[settings] => Array
(
)
)
[FormUtils] => Array
(
[class] => FormUtils
[settings] => Array
(
)
)
[FunctionalUtils] => Array
(
[class] => FunctionalUtils
[settings] => Array
(
)
)
[GeneFamilies] => Array
(
[class] => GeneFamilies
[settings] => Array
(
)
)
[WorkbenchSharedAccessRights] => Array
(
[class] => WorkbenchSharedAccessRights
[settings] => Array
(
)
)
)
)
[Orthology] => OrthologyComponent Object
(
[name] => Orthology
[controller:OrthologyComponent:private] => OrthologsController Object
*RECURSION*
[_Collection:protected] => ComponentCollection Object
*RECURSION*
[settings] => Array
(
)
[components] => Array
(
)
[_componentMap:protected] => Array
(
)
)
)
[defaultPriority] => 10
)
[settings] => Array
(
)
[components] => Array
(
)
[_componentMap:protected] => Array
(
)
)
[Organism] => OrganismComponent Object
(
[name] => Organism
[controller:OrganismComponent:private] => OrthologsController Object
*RECURSION*
[components] => Array
(
[0] => GenomeBrowser
)
[_Collection:protected] => ComponentCollection Object
(
[_Controller:protected] => OrthologsController Object
*RECURSION*
[_enabled:protected] => Array
(
[Session] => Array
(
[0] => 10
[1] => 1
)
[DataUtils] => Array
(
[0] => 10
[1] => 2
)
[FunctionalAnnotationUtils] => Array
(
[0] => 10
[1] => 3
)
[GeneFamilies] => Array
(
[0] => 10
[1] => 4
)
[Organism] => Array
(
[0] => 10
[1] => 5
)
[Blast] => Array
(
[0] => 10
[1] => 6
)
[WorkbenchUtils] => Array
(
[0] => 10
[1] => 7
)
[Orthology] => Array
(
[0] => 10
[1] => 8
)
)
[_loaded:protected] => Array
(
[Session] => SessionComponent Object
(
[_Collection:protected] => ComponentCollection Object
*RECURSION*
[settings] => Array
(
)
[components] => Array
(
)
[_componentMap:protected] => Array
(
)
)
[DataUtils] => DataUtilsComponent Object
(
[name] => DataUtils
[controller] => OrthologsController Object
*RECURSION*
[components] => Array
(
[0] => ExternalPrograms
[1] => FunctionalUtils
[2] => GeneFamilies
[3] => GenomeBrowser
)
[_Collection:protected] => ComponentCollection Object
*RECURSION*
[settings] => Array
(
)
[_componentMap:protected] => Array
(
[ExternalPrograms] => Array
(
[class] => ExternalPrograms
[settings] => Array
(
)
)
[FunctionalUtils] => Array
(
[class] => FunctionalUtils
[settings] => Array
(
)
)
[GeneFamilies] => Array
(
[class] => GeneFamilies
[settings] => Array
(
)
)
[GenomeBrowser] => Array
(
[class] => GenomeBrowser
[settings] => Array
(
)
)
)
[GeneFamilies] => GeneFamiliesComponent Object
(
[name] => GeneFamilies
[controller:GeneFamiliesComponent:private] => OrthologsController Object
*RECURSION*
[_Collection:protected] => ComponentCollection Object
*RECURSION*
[settings] => Array
(
)
[components] => Array
(
)
[_componentMap:protected] => Array
(
)
)
)
[FunctionalAnnotationUtils] => FunctionalAnnotationUtilsComponent Object
(
[name] => FunctionalAnnotationUtils
[controller] => OrthologsController Object
*RECURSION*
[components] => Array
(
[0] => FunctionalUtils
)
[_Collection:protected] => ComponentCollection Object
*RECURSION*
[settings] => Array
(
)
[_componentMap:protected] => Array
(
[FunctionalUtils] => Array
(
[class] => FunctionalUtils
[settings] => Array
(
)
)
)
)
[GeneFamilies] => GeneFamiliesComponent Object
(
[name] => GeneFamilies
[controller:GeneFamiliesComponent:private] => OrthologsController Object
*RECURSION*
[_Collection:protected] => ComponentCollection Object
*RECURSION*
[settings] => Array
(
)
[components] => Array
(
)
[_componentMap:protected] => Array
(
)
)
[Organism] => OrganismComponent Object
*RECURSION*
[Blast] => BlastComponent Object
(
[name] => Blast
[controller] => OrthologsController Object
*RECURSION*
[_Collection:protected] => ComponentCollection Object
*RECURSION*
[settings] => Array
(
)
[components] => Array
(
)
[_componentMap:protected] => Array
(
)
)
[WorkbenchUtils] => WorkbenchUtilsComponent Object
(
[name] => WorkbenchUtils
[controller:WorkbenchUtilsComponent:private] => OrthologsController Object
*RECURSION*
[components] => Array
(
[0] => ExternalPrograms
[1] => FormUtils
[2] => FunctionalUtils
[3] => GeneFamilies
[4] => WorkbenchSharedAccessRights
)
[_Collection:protected] => ComponentCollection Object
*RECURSION*
[settings] => Array
(
)
[_componentMap:protected] => Array
(
[ExternalPrograms] => Array
(
[class] => ExternalPrograms
[settings] => Array
(
)
)
[FormUtils] => Array
(
[class] => FormUtils
[settings] => Array
(
)
)
[FunctionalUtils] => Array
(
[class] => FunctionalUtils
[settings] => Array
(
)
)
[GeneFamilies] => Array
(
[class] => GeneFamilies
[settings] => Array
(
)
)
[WorkbenchSharedAccessRights] => Array
(
[class] => WorkbenchSharedAccessRights
[settings] => Array
(
)
)
)
)
[Orthology] => OrthologyComponent Object
(
[name] => Orthology
[controller:OrthologyComponent:private] => OrthologsController Object
*RECURSION*
[_Collection:protected] => ComponentCollection Object
*RECURSION*
[settings] => Array
(
)
[components] => Array
(
)
[_componentMap:protected] => Array
(
)
)
)
[defaultPriority] => 10
)
[settings] => Array
(
)
[_componentMap:protected] => Array
(
[GenomeBrowser] => Array
(
[class] => GenomeBrowser
[settings] => Array
(
)
)
)
)
[Blast] => BlastComponent Object
(
[name] => Blast
[controller] => OrthologsController Object
*RECURSION*
[_Collection:protected] => ComponentCollection Object
(
[_Controller:protected] => OrthologsController Object
*RECURSION*
[_enabled:protected] => Array
(
[Session] => Array
(
[0] => 10
[1] => 1
)
[DataUtils] => Array
(
[0] => 10
[1] => 2
)
[FunctionalAnnotationUtils] => Array
(
[0] => 10
[1] => 3
)
[GeneFamilies] => Array
(
[0] => 10
[1] => 4
)
[Organism] => Array
(
[0] => 10
[1] => 5
)
[Blast] => Array
(
[0] => 10
[1] => 6
)
[WorkbenchUtils] => Array
(
[0] => 10
[1] => 7
)
[Orthology] => Array
(
[0] => 10
[1] => 8
)
)
[_loaded:protected] => Array
(
[Session] => SessionComponent Object
(
[_Collection:protected] => ComponentCollection Object
*RECURSION*
[settings] => Array
(
)
[components] => Array
(
)
[_componentMap:protected] => Array
(
)
)
[DataUtils] => DataUtilsComponent Object
(
[name] => DataUtils
[controller] => OrthologsController Object
*RECURSION*
[components] => Array
(
[0] => ExternalPrograms
[1] => FunctionalUtils
[2] => GeneFamilies
[3] => GenomeBrowser
)
[_Collection:protected] => ComponentCollection Object
*RECURSION*
[settings] => Array
(
)
[_componentMap:protected] => Array
(
[ExternalPrograms] => Array
(
[class] => ExternalPrograms
[settings] => Array
(
)
)
[FunctionalUtils] => Array
(
[class] => FunctionalUtils
[settings] => Array
(
)
)
[GeneFamilies] => Array
(
[class] => GeneFamilies
[settings] => Array
(
)
)
[GenomeBrowser] => Array
(
[class] => GenomeBrowser
[settings] => Array
(
)
)
)
[GeneFamilies] => GeneFamiliesComponent Object
(
[name] => GeneFamilies
[controller:GeneFamiliesComponent:private] => OrthologsController Object
*RECURSION*
[_Collection:protected] => ComponentCollection Object
*RECURSION*
[settings] => Array
(
)
[components] => Array
(
)
[_componentMap:protected] => Array
(
)
)
)
[FunctionalAnnotationUtils] => FunctionalAnnotationUtilsComponent Object
(
[name] => FunctionalAnnotationUtils
[controller] => OrthologsController Object
*RECURSION*
[components] => Array
(
[0] => FunctionalUtils
)
[_Collection:protected] => ComponentCollection Object
*RECURSION*
[settings] => Array
(
)
[_componentMap:protected] => Array
(
[FunctionalUtils] => Array
(
[class] => FunctionalUtils
[settings] => Array
(
)
)
)
)
[GeneFamilies] => GeneFamiliesComponent Object
(
[name] => GeneFamilies
[controller:GeneFamiliesComponent:private] => OrthologsController Object
*RECURSION*
[_Collection:protected] => ComponentCollection Object
*RECURSION*
[settings] => Array
(
)
[components] => Array
(
)
[_componentMap:protected] => Array
(
)
)
[Organism] => OrganismComponent Object
(
[name] => Organism
[controller:OrganismComponent:private] => OrthologsController Object
*RECURSION*
[components] => Array
(
[0] => GenomeBrowser
)
[_Collection:protected] => ComponentCollection Object
*RECURSION*
[settings] => Array
(
)
[_componentMap:protected] => Array
(
[GenomeBrowser] => Array
(
[class] => GenomeBrowser
[settings] => Array
(
)
)
)
)
[Blast] => BlastComponent Object
*RECURSION*
[WorkbenchUtils] => WorkbenchUtilsComponent Object
(
[name] => WorkbenchUtils
[controller:WorkbenchUtilsComponent:private] => OrthologsController Object
*RECURSION*
[components] => Array
(
[0] => ExternalPrograms
[1] => FormUtils
[2] => FunctionalUtils
[3] => GeneFamilies
[4] => WorkbenchSharedAccessRights
)
[_Collection:protected] => ComponentCollection Object
*RECURSION*
[settings] => Array
(
)
[_componentMap:protected] => Array
(
[ExternalPrograms] => Array
(
[class] => ExternalPrograms
[settings] => Array
(
)
)
[FormUtils] => Array
(
[class] => FormUtils
[settings] => Array
(
)
)
[FunctionalUtils] => Array
(
[class] => FunctionalUtils
[settings] => Array
(
)
)
[GeneFamilies] => Array
(
[class] => GeneFamilies
[settings] => Array
(
)
)
[WorkbenchSharedAccessRights] => Array
(
[class] => WorkbenchSharedAccessRights
[settings] => Array
(
)
)
)
)
[Orthology] => OrthologyComponent Object
(
[name] => Orthology
[controller:OrthologyComponent:private] => OrthologsController Object
*RECURSION*
[_Collection:protected] => ComponentCollection Object
*RECURSION*
[settings] => Array
(
)
[components] => Array
(
)
[_componentMap:protected] => Array
(
)
)
)
[defaultPriority] => 10
)
[settings] => Array
(
)
[components] => Array
(
)
[_componentMap:protected] => Array
(
)
)
[WorkbenchUtils] => WorkbenchUtilsComponent Object
(
[name] => WorkbenchUtils
[controller:WorkbenchUtilsComponent:private] => OrthologsController Object
*RECURSION*
[components] => Array
(
[0] => ExternalPrograms
[1] => FormUtils
[2] => FunctionalUtils
[3] => GeneFamilies
[4] => WorkbenchSharedAccessRights
)
[_Collection:protected] => ComponentCollection Object
(
[_Controller:protected] => OrthologsController Object
*RECURSION*
[_enabled:protected] => Array
(
[Session] => Array
(
[0] => 10
[1] => 1
)
[DataUtils] => Array
(
[0] => 10
[1] => 2
)
[FunctionalAnnotationUtils] => Array
(
[0] => 10
[1] => 3
)
[GeneFamilies] => Array
(
[0] => 10
[1] => 4
)
[Organism] => Array
(
[0] => 10
[1] => 5
)
[Blast] => Array
(
[0] => 10
[1] => 6
)
[WorkbenchUtils] => Array
(
[0] => 10
[1] => 7
)
[Orthology] => Array
(
[0] => 10
[1] => 8
)
)
[_loaded:protected] => Array
(
[Session] => SessionComponent Object
(
[_Collection:protected] => ComponentCollection Object
*RECURSION*
[settings] => Array
(
)
[components] => Array
(
)
[_componentMap:protected] => Array
(
)
)
[DataUtils] => DataUtilsComponent Object
(
[name] => DataUtils
[controller] => OrthologsController Object
*RECURSION*
[components] => Array
(
[0] => ExternalPrograms
[1] => FunctionalUtils
[2] => GeneFamilies
[3] => GenomeBrowser
)
[_Collection:protected] => ComponentCollection Object
*RECURSION*
[settings] => Array
(
)
[_componentMap:protected] => Array
(
[ExternalPrograms] => Array
(
[class] => ExternalPrograms
[settings] => Array
(
)
)
[FunctionalUtils] => Array
(
[class] => FunctionalUtils
[settings] => Array
(
)
)
[GeneFamilies] => Array
(
[class] => GeneFamilies
[settings] => Array
(
)
)
[GenomeBrowser] => Array
(
[class] => GenomeBrowser
[settings] => Array
(
)
)
)
[GeneFamilies] => GeneFamiliesComponent Object
(
[name] => GeneFamilies
[controller:GeneFamiliesComponent:private] => OrthologsController Object
*RECURSION*
[_Collection:protected] => ComponentCollection Object
*RECURSION*
[settings] => Array
(
)
[components] => Array
(
)
[_componentMap:protected] => Array
(
)
)
)
[FunctionalAnnotationUtils] => FunctionalAnnotationUtilsComponent Object
(
[name] => FunctionalAnnotationUtils
[controller] => OrthologsController Object
*RECURSION*
[components] => Array
(
[0] => FunctionalUtils
)
[_Collection:protected] => ComponentCollection Object
*RECURSION*
[settings] => Array
(
)
[_componentMap:protected] => Array
(
[FunctionalUtils] => Array
(
[class] => FunctionalUtils
[settings] => Array
(
)
)
)
)
[GeneFamilies] => GeneFamiliesComponent Object
(
[name] => GeneFamilies
[controller:GeneFamiliesComponent:private] => OrthologsController Object
*RECURSION*
[_Collection:protected] => ComponentCollection Object
*RECURSION*
[settings] => Array
(
)
[components] => Array
(
)
[_componentMap:protected] => Array
(
)
)
[Organism] => OrganismComponent Object
(
[name] => Organism
[controller:OrganismComponent:private] => OrthologsController Object
*RECURSION*
[components] => Array
(
[0] => GenomeBrowser
)
[_Collection:protected] => ComponentCollection Object
*RECURSION*
[settings] => Array
(
)
[_componentMap:protected] => Array
(
[GenomeBrowser] => Array
(
[class] => GenomeBrowser
[settings] => Array
(
)
)
)
)
[Blast] => BlastComponent Object
(
[name] => Blast
[controller] => OrthologsController Object
*RECURSION*
[_Collection:protected] => ComponentCollection Object
*RECURSION*
[settings] => Array
(
)
[components] => Array
(
)
[_componentMap:protected] => Array
(
)
)
[WorkbenchUtils] => WorkbenchUtilsComponent Object
*RECURSION*
[Orthology] => OrthologyComponent Object
(
[name] => Orthology
[controller:OrthologyComponent:private] => OrthologsController Object
*RECURSION*
[_Collection:protected] => ComponentCollection Object
*RECURSION*
[settings] => Array
(
)
[components] => Array
(
)
[_componentMap:protected] => Array
(
)
)
)
[defaultPriority] => 10
)
[settings] => Array
(
)
[_componentMap:protected] => Array
(
[ExternalPrograms] => Array
(
[class] => ExternalPrograms
[settings] => Array
(
)
)
[FormUtils] => Array
(
[class] => FormUtils
[settings] => Array
(
)
)
[FunctionalUtils] => Array
(
[class] => FunctionalUtils
[settings] => Array
(
)
)
[GeneFamilies] => Array
(
[class] => GeneFamilies
[settings] => Array
(
)
)
[WorkbenchSharedAccessRights] => Array
(
[class] => WorkbenchSharedAccessRights
[settings] => Array
(
)
)
)
)
[Orthology] => OrthologyComponent Object
(
[name] => Orthology
[controller:OrthologyComponent:private] => OrthologsController Object
*RECURSION*
[_Collection:protected] => ComponentCollection Object
(
[_Controller:protected] => OrthologsController Object
*RECURSION*
[_enabled:protected] => Array
(
[Session] => Array
(
[0] => 10
[1] => 1
)
[DataUtils] => Array
(
[0] => 10
[1] => 2
)
[FunctionalAnnotationUtils] => Array
(
[0] => 10
[1] => 3
)
[GeneFamilies] => Array
(
[0] => 10
[1] => 4
)
[Organism] => Array
(
[0] => 10
[1] => 5
)
[Blast] => Array
(
[0] => 10
[1] => 6
)
[WorkbenchUtils] => Array
(
[0] => 10
[1] => 7
)
[Orthology] => Array
(
[0] => 10
[1] => 8
)
)
[_loaded:protected] => Array
(
[Session] => SessionComponent Object
(
[_Collection:protected] => ComponentCollection Object
*RECURSION*
[settings] => Array
(
)
[components] => Array
(
)
[_componentMap:protected] => Array
(
)
)
[DataUtils] => DataUtilsComponent Object
(
[name] => DataUtils
[controller] => OrthologsController Object
*RECURSION*
[components] => Array
(
[0] => ExternalPrograms
[1] => FunctionalUtils
[2] => GeneFamilies
[3] => GenomeBrowser
)
[_Collection:protected] => ComponentCollection Object
*RECURSION*
[settings] => Array
(
)
[_componentMap:protected] => Array
(
[ExternalPrograms] => Array
(
[class] => ExternalPrograms
[settings] => Array
(
)
)
[FunctionalUtils] => Array
(
[class] => FunctionalUtils
[settings] => Array
(
)
)
[GeneFamilies] => Array
(
[class] => GeneFamilies
[settings] => Array
(
)
)
[GenomeBrowser] => Array
(
[class] => GenomeBrowser
[settings] => Array
(
)
)
)
[GeneFamilies] => GeneFamiliesComponent Object
(
[name] => GeneFamilies
[controller:GeneFamiliesComponent:private] => OrthologsController Object
*RECURSION*
[_Collection:protected] => ComponentCollection Object
*RECURSION*
[settings] => Array
(
)
[components] => Array
(
)
[_componentMap:protected] => Array
(
)
)
)
[FunctionalAnnotationUtils] => FunctionalAnnotationUtilsComponent Object
(
[name] => FunctionalAnnotationUtils
[controller] => OrthologsController Object
*RECURSION*
[components] => Array
(
[0] => FunctionalUtils
)
[_Collection:protected] => ComponentCollection Object
*RECURSION*
[settings] => Array
(
)
[_componentMap:protected] => Array
(
[FunctionalUtils] => Array
(
[class] => FunctionalUtils
[settings] => Array
(
)
)
)
)
[GeneFamilies] => GeneFamiliesComponent Object
(
[name] => GeneFamilies
[controller:GeneFamiliesComponent:private] => OrthologsController Object
*RECURSION*
[_Collection:protected] => ComponentCollection Object
*RECURSION*
[settings] => Array
(
)
[components] => Array
(
)
[_componentMap:protected] => Array
(
)
)
[Organism] => OrganismComponent Object
(
[name] => Organism
[controller:OrganismComponent:private] => OrthologsController Object
*RECURSION*
[components] => Array
(
[0] => GenomeBrowser
)
[_Collection:protected] => ComponentCollection Object
*RECURSION*
[settings] => Array
(
)
[_componentMap:protected] => Array
(
[GenomeBrowser] => Array
(
[class] => GenomeBrowser
[settings] => Array
(
)
)
)
)
[Blast] => BlastComponent Object
(
[name] => Blast
[controller] => OrthologsController Object
*RECURSION*
[_Collection:protected] => ComponentCollection Object
*RECURSION*
[settings] => Array
(
)
[components] => Array
(
)
[_componentMap:protected] => Array
(
)
)
[WorkbenchUtils] => WorkbenchUtilsComponent Object
(
[name] => WorkbenchUtils
[controller:WorkbenchUtilsComponent:private] => OrthologsController Object
*RECURSION*
[components] => Array
(
[0] => ExternalPrograms
[1] => FormUtils
[2] => FunctionalUtils
[3] => GeneFamilies
[4] => WorkbenchSharedAccessRights
)
[_Collection:protected] => ComponentCollection Object
*RECURSION*
[settings] => Array
(
)
[_componentMap:protected] => Array
(
[ExternalPrograms] => Array
(
[class] => ExternalPrograms
[settings] => Array
(
)
)
[FormUtils] => Array
(
[class] => FormUtils
[settings] => Array
(
)
)
[FunctionalUtils] => Array
(
[class] => FunctionalUtils
[settings] => Array
(
)
)
[GeneFamilies] => Array
(
[class] => GeneFamilies
[settings] => Array
(
)
)
[WorkbenchSharedAccessRights] => Array
(
[class] => WorkbenchSharedAccessRights
[settings] => Array
(
)
)
)
)
[Orthology] => OrthologyComponent Object
*RECURSION*
)
[defaultPriority] => 10
)
[settings] => Array
(
)
[components] => Array
(
)
[_componentMap:protected] => Array
(
)
)
[Annotation] => Annotation Object
(
[name] => Annotation
[useTable] => annotation
[primaryKey] => gene_id
[cacheQueries] =>
[cacheSources] =>
[belongsTo] => Array
(
[AnnotSource] => Array
(
[foreignKey] => species
[className] => AnnotSource
[conditions] =>
[fields] =>
[order] =>
[counterCache] =>
)
)
[hasMany] => Array
(
[GfDatum] => Array
(
[foreignKey] => gene_id
[className] => GfDatum
[conditions] =>
[fields] =>
[order] =>
[limit] =>
[offset] =>
[dependent] =>
[exclusive] =>
[finderQuery] =>
[counterQuery] =>
)
)
[useDbConfig] => default
[id] =>
[data] => Array
(
)
[schemaName] => db_plaza_public_dicots_05
[table] => annotation
[_schema:protected] => Array
(
[gene_id] => Array
(
[type] => string
[null] =>
[default] =>
[length] => 50
[key] => primary
[collate] => latin1_swedish_ci
[charset] => latin1
)
[species] => Array
(
[type] => string
[null] =>
[default] =>
[length] => 21
[key] => index
[collate] => latin1_swedish_ci
[charset] => latin1
)
[transcript] => Array
(
[type] => string
[null] => 1
[default] =>
[length] => 100
[key] => index
[collate] => latin1_swedish_ci
[charset] => latin1
)
[coord_cds] => Array
(
[type] => text
[null] => 1
[default] =>
[length] =>
[collate] => latin1_swedish_ci
[charset] => latin1
)
[start] => Array
(
[type] => integer
[null] =>
[default] => 0
[length] =>
[unsigned] =>
)
[stop] => Array
(
[type] => integer
[null] =>
[default] => 0
[length] =>
[unsigned] =>
)
[coord_transcript] => Array
(
[type] => text
[null] => 1
[default] =>
[length] =>
[collate] => latin1_swedish_ci
[charset] => latin1
)
[seq] => Array
(
[type] => text
[null] =>
[default] =>
[length] =>
[collate] => latin1_swedish_ci
[charset] => latin1
)
[strand] => Array
(
[type] => string
[null] =>
[default] =>
[length] => 1
[collate] => latin1_swedish_ci
[charset] => latin1
)
[chr] => Array
(
[type] => string
[null] =>
[default] =>
[length] => 100
[key] => index
[collate] => latin1_swedish_ci
[charset] => latin1
)
[type] => Array
(
[type] => enum('coding','rna','te','pseudo')
[null] =>
[default] => coding
[length] => 6
[key] => index
[collate] => latin1_swedish_ci
[charset] => latin1
)
[check_transcript] => Array
(
[type] => enum('none','ne','eq')
[null] =>
[default] => none
[length] => 4
[key] => index
[collate] => latin1_swedish_ci
[charset] => latin1
)
[check_protein] => Array
(
[type] => enum('none','ne','eq')
[null] =>
[default] => none
[length] => 4
[key] => index
[collate] => latin1_swedish_ci
[charset] => latin1
)
[transl_table] => Array
(
[type] => tinyinteger
[null] =>
[default] => 1
[length] =>
[unsigned] =>
)
)
[validate] => Array
(
)
[validationErrors] => Array
(
)
[validationDomain] =>
[tablePrefix] =>
[plugin] =>
[alias] => Annotation
[tableToModel] => Array
(
[annotation] => Annotation
)
[hasOne] => Array
(
)
[hasAndBelongsToMany] => Array
(
)
[actsAs] =>
[Behaviors] => BehaviorCollection Object
(
[modelName] => Annotation
[_methods:protected] => Array
(
)
[_mappedMethods:protected] => Array
(
)
[_enabled:protected] => Array
(
)
[_loaded:protected] => Array
(
)
[defaultPriority] => 10
)
[whitelist] => Array
(
)
[findQueryType] =>
[recursive] => 1
[order] =>
[virtualFields] => Array
(
)
[_associationKeys:protected] => Array
(
[belongsTo] => Array
(
[0] => className
[1] => foreignKey
[2] => conditions
[3] => fields
[4] => order
[5] => counterCache
)
[hasOne] => Array
(
[0] => className
[1] => foreignKey
[2] => conditions
[3] => fields
[4] => order
[5] => dependent
)
[hasMany] => Array
(
[0] => className
[1] => foreignKey
[2] => conditions
[3] => fields
[4] => order
[5] => limit
[6] => offset
[7] => dependent
[8] => exclusive
[9] => finderQuery
[10] => counterQuery
)
[hasAndBelongsToMany] => Array
(
[0] => className
[1] => joinTable
[2] => with
[3] => foreignKey
[4] => associationForeignKey
[5] => conditions
[6] => fields
[7] => order
[8] => limit
[9] => offset
[10] => unique
[11] => finderQuery
)
)
[_associations:protected] => Array
(
[0] => belongsTo
[1] => hasOne
[2] => hasMany
[3] => hasAndBelongsToMany
)
[__backAssociation] => Array
(
)
[__backInnerAssociation] => Array
(
)
[__backOriginalAssociation] => Array
(
)
[__backContainableAssociation] => Array
(
)
[__safeUpdateMode] =>
[useConsistentAfterFind] => 1
[_insertID:protected] =>
[_sourceConfigured:protected] => 1
[findMethods] => Array
(
[all] => 1
[first] => 1
[count] => 1
[neighbors] => 1
[list] => 1
[threaded] => 1
)
[_eventManager:protected] => CakeEventManager Object
(
[_listeners:protected] => Array
(
[Model.beforeFind] => Array
(
[10] => Array
(
[0] => Array
(
[callable] => Array
(
[0] => BehaviorCollection Object
(
[modelName] => Annotation
[_methods:protected] => Array
(
)
[_mappedMethods:protected] => Array
(
)
[_enabled:protected] => Array
(
)
[_loaded:protected] => Array
(
)
[defaultPriority] => 10
)
[1] => trigger
)
[passParams] =>
)
[1] => Array
(
[callable] => Array
(
[0] => Annotation Object
*RECURSION*
[1] => beforeFind
)
[passParams] => 1
)
)
)
[Model.afterFind] => Array
(
[10] => Array
(
[0] => Array
(
[callable] => Array
(
[0] => BehaviorCollection Object
(
[modelName] => Annotation
[_methods:protected] => Array
(
)
[_mappedMethods:protected] => Array
(
)
[_enabled:protected] => Array
(
)
[_loaded:protected] => Array
(
)
[defaultPriority] => 10
)
[1] => trigger
)
[passParams] =>
)
[1] => Array
(
[callable] => Array
(
[0] => Annotation Object
*RECURSION*
[1] => afterFind
)
[passParams] => 1
)
)
)
[Model.beforeValidate] => Array
(
[10] => Array
(
[0] => Array
(
[callable] => Array
(
[0] => BehaviorCollection Object
(
[modelName] => Annotation
[_methods:protected] => Array
(
)
[_mappedMethods:protected] => Array
(
)
[_enabled:protected] => Array
(
)
[_loaded:protected] => Array
(
)
[defaultPriority] => 10
)
[1] => trigger
)
[passParams] =>
)
[1] => Array
(
[callable] => Array
(
[0] => Annotation Object
*RECURSION*
[1] => beforeValidate
)
[passParams] => 1
)
)
)
[Model.afterValidate] => Array
(
[10] => Array
(
[0] => Array
(
[callable] => Array
(
[0] => BehaviorCollection Object
(
[modelName] => Annotation
[_methods:protected] => Array
(
)
[_mappedMethods:protected] => Array
(
)
[_enabled:protected] => Array
(
)
[_loaded:protected] => Array
(
)
[defaultPriority] => 10
)
[1] => trigger
)
[passParams] =>
)
[1] => Array
(
[callable] => Array
(
[0] => Annotation Object
*RECURSION*
[1] => afterValidate
)
[passParams] =>
)
)
)
[Model.beforeSave] => Array
(
[10] => Array
(
[0] => Array
(
[callable] => Array
(
[0] => BehaviorCollection Object
(
[modelName] => Annotation
[_methods:protected] => Array
(
)
[_mappedMethods:protected] => Array
(
)
[_enabled:protected] => Array
(
)
[_loaded:protected] => Array
(
)
[defaultPriority] => 10
)
[1] => trigger
)
[passParams] =>
)
[1] => Array
(
[callable] => Array
(
[0] => Annotation Object
*RECURSION*
[1] => beforeSave
)
[passParams] => 1
)
)
)
[Model.afterSave] => Array
(
[10] => Array
(
[0] => Array
(
[callable] => Array
(
[0] => BehaviorCollection Object
(
[modelName] => Annotation
[_methods:protected] => Array
(
)
[_mappedMethods:protected] => Array
(
)
[_enabled:protected] => Array
(
)
[_loaded:protected] => Array
(
)
[defaultPriority] => 10
)
[1] => trigger
)
[passParams] =>
)
[1] => Array
(
[callable] => Array
(
[0] => Annotation Object
*RECURSION*
[1] => afterSave
)
[passParams] => 1
)
)
)
[Model.beforeDelete] => Array
(
[10] => Array
(
[0] => Array
(
[callable] => Array
(
[0] => BehaviorCollection Object
(
[modelName] => Annotation
[_methods:protected] => Array
(
)
[_mappedMethods:protected] => Array
(
)
[_enabled:protected] => Array
(
)
[_loaded:protected] => Array
(
)
[defaultPriority] => 10
)
[1] => trigger
)
[passParams] =>
)
[1] => Array
(
[callable] => Array
(
[0] => Annotation Object
*RECURSION*
[1] => beforeDelete
)
[passParams] => 1
)
)
)
[Model.afterDelete] => Array
(
[10] => Array
(
[0] => Array
(
[callable] => Array
(
[0] => BehaviorCollection Object
(
[modelName] => Annotation
[_methods:protected] => Array
(
)
[_mappedMethods:protected] => Array
(
)
[_enabled:protected] => Array
(
)
[_loaded:protected] => Array
(
)
[defaultPriority] => 10
)
[1] => trigger
)
[passParams] =>
)
[1] => Array
(
[callable] => Array
(
[0] => Annotation Object
*RECURSION*
[1] => afterDelete
)
[passParams] =>
)
)
)
)
[_isGlobal:protected] =>
)
[_validator:protected] =>
)
[Orthologs] => Orthologs Object
(
[name] => Orthologs
[useTable] => orthologs
[useDbConfig] => default
[id] =>
[data] => Array
(
)
[schemaName] => db_plaza_public_dicots_05
[table] => orthologs
[primaryKey] => id
[_schema:protected] => Array
(
[gene_id] => Array
(
[type] => string
[null] =>
[default] =>
[length] => 50
[key] => primary
[collate] => latin1_swedish_ci
[charset] => latin1
)
[species] => Array
(
[type] => string
[null] =>
[default] =>
[length] => 21
[key] => index
[collate] => latin1_swedish_ci
[charset] => latin1
)
[type] => Array
(
[type] => enum('ORTHO','anchor_point','BHIF','TROG')
[null] =>
[default] =>
[length] => 12
[key] => primary
[collate] => latin1_swedish_ci
[charset] => latin1
)
[gene_content] => Array
(
[type] => text
[null] =>
[default] =>
[length] =>
[collate] => latin1_swedish_ci
[charset] => latin1
)
[comment] => Array
(
[type] => text
[null] => 1
[default] =>
[length] =>
[collate] => latin1_swedish_ci
[charset] => latin1
)
)
[validate] => Array
(
)
[validationErrors] => Array
(
)
[validationDomain] =>
[tablePrefix] =>
[plugin] =>
[alias] => Orthologs
[tableToModel] => Array
(
[orthologs] => Orthologs
)
[cacheQueries] =>
[belongsTo] => Array
(
)
[hasOne] => Array
(
)
[hasMany] => Array
(
)
[hasAndBelongsToMany] => Array
(
)
[actsAs] =>
[Behaviors] => BehaviorCollection Object
(
[modelName] => Orthologs
[_methods:protected] => Array
(
)
[_mappedMethods:protected] => Array
(
)
[_enabled:protected] => Array
(
)
[_loaded:protected] => Array
(
)
[defaultPriority] => 10
)
[whitelist] => Array
(
)
[cacheSources] => 1
[findQueryType] =>
[recursive] => 1
[order] =>
[virtualFields] => Array
(
)
[_associationKeys:protected] => Array
(
[belongsTo] => Array
(
[0] => className
[1] => foreignKey
[2] => conditions
[3] => fields
[4] => order
[5] => counterCache
)
[hasOne] => Array
(
[0] => className
[1] => foreignKey
[2] => conditions
[3] => fields
[4] => order
[5] => dependent
)
[hasMany] => Array
(
[0] => className
[1] => foreignKey
[2] => conditions
[3] => fields
[4] => order
[5] => limit
[6] => offset
[7] => dependent
[8] => exclusive
[9] => finderQuery
[10] => counterQuery
)
[hasAndBelongsToMany] => Array
(
[0] => className
[1] => joinTable
[2] => with
[3] => foreignKey
[4] => associationForeignKey
[5] => conditions
[6] => fields
[7] => order
[8] => limit
[9] => offset
[10] => unique
[11] => finderQuery
)
)
[_associations:protected] => Array
(
[0] => belongsTo
[1] => hasOne
[2] => hasMany
[3] => hasAndBelongsToMany
)
[__backAssociation] => Array
(
)
[__backInnerAssociation] => Array
(
)
[__backOriginalAssociation] => Array
(
)
[__backContainableAssociation] => Array
(
)
[__safeUpdateMode] =>
[useConsistentAfterFind] => 1
[_insertID:protected] =>
[_sourceConfigured:protected] => 1
[findMethods] => Array
(
[all] => 1
[first] => 1
[count] => 1
[neighbors] => 1
[list] => 1
[threaded] => 1
)
[_eventManager:protected] => CakeEventManager Object
(
[_listeners:protected] => Array
(
[Model.beforeFind] => Array
(
[10] => Array
(
[0] => Array
(
[callable] => Array
(
[0] => BehaviorCollection Object
(
[modelName] => Orthologs
[_methods:protected] => Array
(
)
[_mappedMethods:protected] => Array
(
)
[_enabled:protected] => Array
(
)
[_loaded:protected] => Array
(
)
[defaultPriority] => 10
)
[1] => trigger
)
[passParams] =>
)
[1] => Array
(
[callable] => Array
(
[0] => Orthologs Object
*RECURSION*
[1] => beforeFind
)
[passParams] => 1
)
)
)
[Model.afterFind] => Array
(
[10] => Array
(
[0] => Array
(
[callable] => Array
(
[0] => BehaviorCollection Object
(
[modelName] => Orthologs
[_methods:protected] => Array
(
)
[_mappedMethods:protected] => Array
(
)
[_enabled:protected] => Array
(
)
[_loaded:protected] => Array
(
)
[defaultPriority] => 10
)
[1] => trigger
)
[passParams] =>
)
[1] => Array
(
[callable] => Array
(
[0] => Orthologs Object
*RECURSION*
[1] => afterFind
)
[passParams] => 1
)
)
)
[Model.beforeValidate] => Array
(
[10] => Array
(
[0] => Array
(
[callable] => Array
(
[0] => BehaviorCollection Object
(
[modelName] => Orthologs
[_methods:protected] => Array
(
)
[_mappedMethods:protected] => Array
(
)
[_enabled:protected] => Array
(
)
[_loaded:protected] => Array
(
)
[defaultPriority] => 10
)
[1] => trigger
)
[passParams] =>
)
[1] => Array
(
[callable] => Array
(
[0] => Orthologs Object
*RECURSION*
[1] => beforeValidate
)
[passParams] => 1
)
)
)
[Model.afterValidate] => Array
(
[10] => Array
(
[0] => Array
(
[callable] => Array
(
[0] => BehaviorCollection Object
(
[modelName] => Orthologs
[_methods:protected] => Array
(
)
[_mappedMethods:protected] => Array
(
)
[_enabled:protected] => Array
(
)
[_loaded:protected] => Array
(
)
[defaultPriority] => 10
)
[1] => trigger
)
[passParams] =>
)
[1] => Array
(
[callable] => Array
(
[0] => Orthologs Object
*RECURSION*
[1] => afterValidate
)
[passParams] =>
)
)
)
[Model.beforeSave] => Array
(
[10] => Array
(
[0] => Array
(
[callable] => Array
(
[0] => BehaviorCollection Object
(
[modelName] => Orthologs
[_methods:protected] => Array
(
)
[_mappedMethods:protected] => Array
(
)
[_enabled:protected] => Array
(
)
[_loaded:protected] => Array
(
)
[defaultPriority] => 10
)
[1] => trigger
)
[passParams] =>
)
[1] => Array
(
[callable] => Array
(
[0] => Orthologs Object
*RECURSION*
[1] => beforeSave
)
[passParams] => 1
)
)
)
[Model.afterSave] => Array
(
[10] => Array
(
[0] => Array
(
[callable] => Array
(
[0] => BehaviorCollection Object
(
[modelName] => Orthologs
[_methods:protected] => Array
(
)
[_mappedMethods:protected] => Array
(
)
[_enabled:protected] => Array
(
)
[_loaded:protected] => Array
(
)
[defaultPriority] => 10
)
[1] => trigger
)
[passParams] =>
)
[1] => Array
(
[callable] => Array
(
[0] => Orthologs Object
*RECURSION*
[1] => afterSave
)
[passParams] => 1
)
)
)
[Model.beforeDelete] => Array
(
[10] => Array
(
[0] => Array
(
[callable] => Array
(
[0] => BehaviorCollection Object
(
[modelName] => Orthologs
[_methods:protected] => Array
(
)
[_mappedMethods:protected] => Array
(
)
[_enabled:protected] => Array
(
)
[_loaded:protected] => Array
(
)
[defaultPriority] => 10
)
[1] => trigger
)
[passParams] =>
)
[1] => Array
(
[callable] => Array
(
[0] => Orthologs Object
*RECURSION*
[1] => beforeDelete
)
[passParams] => 1
)
)
)
[Model.afterDelete] => Array
(
[10] => Array
(
[0] => Array
(
[callable] => Array
(
[0] => BehaviorCollection Object
(
[modelName] => Orthologs
[_methods:protected] => Array
(
)
[_mappedMethods:protected] => Array
(
)
[_enabled:protected] => Array
(
)
[_loaded:protected] => Array
(
)
[defaultPriority] => 10
)
[1] => trigger
)
[passParams] =>
)
[1] => Array
(
[callable] => Array
(
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[_validator:protected] =>
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[Configuration] => Configuration Object
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[defaultPriority] => 10
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[whitelist] => Array
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[cacheSources] => 1
[findQueryType] =>
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[_associationKeys:protected] => Array
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[_associations:protected] => Array
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[__backContainableAssociation] => Array
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[_eventManager:protected] => CakeEventManager Object
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[10] => Array
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[modelName] => Configuration
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(
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[_mappedMethods:protected] => Array
(
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[_enabled:protected] => Array
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[_loaded:protected] => Array
(
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[defaultPriority] => 10
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[1] => trigger
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[1] => Array
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[Model.afterFind] => Array
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[_mappedMethods:protected] => Array
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[1] => Array
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[_enabled:protected] => Array
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[1] => Array
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[passParams] =>
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[_mappedMethods:protected] => Array
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[1] => Array
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[callable] => Array
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[_enabled:protected] => Array
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[_mappedMethods:protected] => Array
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[_enabled:protected] => Array
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[defaultPriority] => 10
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[1] => Array
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[callable] => Array
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[0] => Configuration Object
*RECURSION*
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[passParams] => 1
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[Model.afterDelete] => Array
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[0] => Array
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[callable] => Array
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[0] => BehaviorCollection Object
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[modelName] => Configuration
[_methods:protected] => Array
(
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[_mappedMethods:protected] => Array
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[1] => trigger
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[passParams] =>
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[1] => Array
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[_isGlobal:protected] =>
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[AnnotSource] => AnnotSource Object
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[primaryKey] => species
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[id] =>
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(
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[collate] => latin1_swedish_ci
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[species] => Array
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[type] => string
[null] =>
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[common_name] => Array
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[eco_type] => Array
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[collate] => latin1_swedish_ci
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[description] => Array
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[collate] => latin1_swedish_ci
[charset] => latin1
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[paper] => Array
(
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[collate] => latin1_swedish_ci
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)
[tax_id] => Array
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[unsigned] =>
)
[mitochondrion] => Array
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[collate] => latin1_swedish_ci
[charset] => latin1
)
[chloroplast] => Array
(
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[null] => 1
[default] =>
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[collate] => latin1_swedish_ci
[charset] => latin1
)
[disclaimer] => Array
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[null] => 1
[default] =>
[length] =>
[collate] => latin1_swedish_ci
[charset] => latin1
)
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[validate] => Array
(
)
[validationErrors] => Array
(
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[validationDomain] =>
[tablePrefix] =>
[plugin] =>
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[tableToModel] => Array
(
[annot_sources] => AnnotSource
)
[cacheQueries] =>
[belongsTo] => Array
(
)
[hasOne] => Array
(
)
[hasMany] => Array
(
)
[hasAndBelongsToMany] => Array
(
)
[actsAs] =>
[Behaviors] => BehaviorCollection Object
(
[modelName] => AnnotSource
[_methods:protected] => Array
(
)
[_mappedMethods:protected] => Array
(
)
[_enabled:protected] => Array
(
)
[_loaded:protected] => Array
(
)
[defaultPriority] => 10
)
[whitelist] => Array
(
)
[cacheSources] => 1
[findQueryType] =>
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(
)
[_associationKeys:protected] => Array
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[hasOne] => Array
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(
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[hasAndBelongsToMany] => Array
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[_associations:protected] => Array
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[__backAssociation] => Array
(
)
[__backInnerAssociation] => Array
(
)
[__backOriginalAssociation] => Array
(
)
[__backContainableAssociation] => Array
(
)
[__safeUpdateMode] =>
[useConsistentAfterFind] => 1
[_insertID:protected] =>
[_sourceConfigured:protected] => 1
[findMethods] => Array
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[threaded] => 1
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[_eventManager:protected] => CakeEventManager Object
(
[_listeners:protected] => Array
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[Model.beforeFind] => Array
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[10] => Array
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[0] => Array
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[callable] => Array
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[0] => BehaviorCollection Object
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[modelName] => AnnotSource
[_methods:protected] => Array
(
)
[_mappedMethods:protected] => Array
(
)
[_enabled:protected] => Array
(
)
[_loaded:protected] => Array
(
)
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[passParams] =>
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[1] => Array
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[Model.afterFind] => Array
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[Model.beforeSave] => Array
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[callable] => Array
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[0] => BehaviorCollection Object
(
[modelName] => AnnotSource
[_methods:protected] => Array
(
)
[_mappedMethods:protected] => Array
(
)
[_enabled:protected] => Array
(
)
[_loaded:protected] => Array
(
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[defaultPriority] => 10
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[1] => trigger
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[1] => Array
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[Model.afterSave] => Array
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[_methods:protected] => Array
(
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(
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[1] => Array
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[Model.beforeDelete] => Array
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[0] => Array
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[callable] => Array
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[0] => BehaviorCollection Object
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[modelName] => AnnotSource
[_methods:protected] => Array
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(
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(
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[1] => Array
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[AdExperiments] => AdExperiments Object
(
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[primaryKey] => exp_id
[useDbConfig] => default
[id] =>
[data] => Array
(
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)
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[validate] => Array
(
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[validationErrors] => Array
(
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[validationDomain] =>
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[tableToModel] => Array
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(
)
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(
)
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(
)
[hasAndBelongsToMany] => Array
(
)
[actsAs] =>
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(
)
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(
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(
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(
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[hasMany] => Array
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[__backAssociation] => Array
(
)
[__backInnerAssociation] => Array
(
)
[__backOriginalAssociation] => Array
(
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[__backContainableAssociation] => Array
(
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[__safeUpdateMode] =>
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[_eventManager:protected] => CakeEventManager Object
(
[_listeners:protected] => Array
(
[Model.beforeFind] => Array
(
[10] => Array
(
[0] => Array
(
[callable] => Array
(
[0] => BehaviorCollection Object
(
[modelName] => AdExperiments
[_methods:protected] => Array
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[_mappedMethods:protected] => Array
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[_enabled:protected] => Array
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[_loaded:protected] => Array
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[1] => trigger
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[1] => Array
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[callable] => Array
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[_mappedMethods:protected] => Array
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)
[_enabled:protected] => Array
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[_loaded:protected] => Array
(
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[defaultPriority] => 10
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[1] => trigger
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[1] => Array
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[Model.afterValidate] => Array
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[actsAs] =>
[Behaviors] => BehaviorCollection Object
(
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[_methods:protected] => Array
(
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[_mappedMethods:protected] => Array
(
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[_enabled:protected] => Array
(
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[_loaded:protected] => Array
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[defaultPriority] => 10
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[whitelist] => Array
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[cacheSources] => 1
[findQueryType] =>
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[_associationKeys:protected] => Array
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[hasMany] => Array
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[9] => finderQuery
[10] => counterQuery
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[11] => finderQuery
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[_associations:protected] => Array
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[0] => belongsTo
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(
)
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(
)
[__backOriginalAssociation] => Array
(
)
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(
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[__safeUpdateMode] =>
[useConsistentAfterFind] => 1
[_insertID:protected] =>
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[all] => 1
[first] => 1
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[_eventManager:protected] => CakeEventManager Object
(
[_listeners:protected] => Array
(
[Model.beforeFind] => Array
(
[10] => Array
(
[0] => Array
(
[callable] => Array
(
[0] => BehaviorCollection Object
(
[modelName] => FunctionalClustersExperiments
[_methods:protected] => Array
(
)
[_mappedMethods:protected] => Array
(
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[_enabled:protected] => Array
(
)
[_loaded:protected] => Array
(
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[defaultPriority] => 10
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[1] => trigger
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[passParams] =>
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[1] => Array
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[0] => FunctionalClustersExperiments Object
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(
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(
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[1] => trigger
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[passParams] =>
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[1] => Array
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(
[0] => FunctionalClustersExperiments Object
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[1] => afterFind
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[passParams] => 1
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[Model.beforeValidate] => Array
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[0] => Array
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[_mappedMethods:protected] => Array
(
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[_enabled:protected] => Array
(
)
[_loaded:protected] => Array
(
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[defaultPriority] => 10
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[1] => trigger
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[passParams] =>
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[1] => Array
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[callable] => Array
(
[0] => FunctionalClustersExperiments Object
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[1] => beforeValidate
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[passParams] => 1
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[Model.afterValidate] => Array
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[Model.afterSave] => Array
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[0] => Array
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[callable] => Array
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[0] => BehaviorCollection Object
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[callable] => Array
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[0] => BehaviorCollection Object
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[modelName] => FunctionalClustersExperiments
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[_mappedMethods:protected] => Array
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(
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[_loaded:protected] => Array
(
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[defaultPriority] => 10
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[1] => trigger
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[1] => Array
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[0] => FunctionalClustersExperiments Object
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[Model.afterDelete] => Array
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[_isGlobal:protected] =>
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[_validator:protected] =>
)
[Msa] => Msa Object
(
[name] => Msa
[useTable] => msa
[primaryKey] => msa_id
[useDbConfig] => default
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[data] => Array
(
)
[schemaName] =>
[table] => msa
[_schema:protected] =>
[validate] => Array
(
)
[validationErrors] => Array
(
)
[validationDomain] =>
[plugin] =>
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[tableToModel] => Array
(
[msa] => Msa
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[cacheQueries] =>
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(
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[hasOne] => Array
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[actsAs] =>
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[_methods:protected] => Array
(
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[_enabled:protected] => Array
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(
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[defaultPriority] => 10
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[whitelist] => Array
(
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[cacheSources] => 1
[findQueryType] =>
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(
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[_associationKeys:protected] => Array
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[__backOriginalAssociation] => Array
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[__backContainableAssociation] => Array
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[__safeUpdateMode] =>
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[_insertID:protected] =>
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[all] => 1
[first] => 1
[count] => 1
[neighbors] => 1
[list] => 1
[threaded] => 1
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[_eventManager:protected] =>
[_validator:protected] =>
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[Trees] => Trees Object
(
[name] => Trees
[useTable] => trees
[useDbConfig] => default
[id] =>
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(
)
[schemaName] =>
[table] => trees
[primaryKey] => id
[_schema:protected] =>
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(
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[validationErrors] => Array
(
)
[validationDomain] =>
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[tableToModel] => Array
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[trees] => Trees
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(
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(
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(
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(
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(
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(
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(
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(
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[11] => finderQuery
)
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[0] => belongsTo
[1] => hasOne
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(
[all] => 1
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[_eventManager:protected] =>
[_validator:protected] =>
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)
controller Notice (8) : Trying to get property 'Configuration' of non-object [APP/Controller/Component/GenomeBrowserComponent.php , line 105 ]Code Context
//Construct url for synteny-scores
$species_tree = $this -> controller -> Configuration -> getBasicSpeciesTree ();
$species = 'bna'
$configuration_settings = array(
'annotation_directory' => 'GFF/%SPECIES%/',
'annotation_file_compressed' => 'true',
'annotation_file_extension' => 'gff3',
'annotation_file_prefix' => 'annotation.all_transcripts.all_features',
'data_url' => 'https://ftp.psb.ugent.be/pub/plaza/plaza_public_dicots_05/',
'genomes_directory' => 'Genomes',
'genomes_file_compressed' => 'true',
'genomes_file_extension' => 'fasta'
)
$base_data_url = 'https://ftp.psb.ugent.be/pub/plaza/plaza_public_dicots_05/'
$genome_dir_url = 'https://ftp.psb.ugent.be/pub/plaza/plaza_public_dicots_05/Genomes/'
$annotation_dir_url = 'https://ftp.psb.ugent.be/pub/plaza/plaza_public_dicots_05/GFF/bna/'
$genome_file_name = 'bna.fasta.gz'
$annotation_file_name = 'annotation.all_transcripts.all_features.bna.gff3.gz'
$genome_file_url = 'https://ftp.psb.ugent.be/pub/plaza/plaza_public_dicots_05/Genomes/bna.fasta.gz'
$annotation_file_url = 'https://ftp.psb.ugent.be/pub/plaza/plaza_public_dicots_05/GFF/bna/annotation.all_transcripts.all_features.bna.gff3.gz' GenomeBrowserComponent::getValidatedDataSettings() - APP/Controller/Component/GenomeBrowserComponent.php, line 105
DataUtilsComponent::getSidebarToolsInfo() - APP/Controller/Component/DataUtilsComponent.php, line 65
AppController::beforeRender() - APP/Controller/AppController.php, line 94
CakeEventManager::dispatch() - CORE/Cake/Event/CakeEventManager.php, line 243
Controller::render() - CORE/Cake/Controller/Controller.php, line 936
Dispatcher::_invoke() - CORE/Cake/Routing/Dispatcher.php, line 200
Dispatcher::dispatch() - CORE/Cake/Routing/Dispatcher.php, line 167
[main] - APP/webroot/index.php, line 151
Errors
Call to a member function getBasicSpeciesTree() on null
Error:
An Internal Error Has Occurred.
Stack Trace
APP/Controller/Component/DataUtilsComponent.php line 65 → GenomeBrowserComponent->getValidatedDataSettings() $default_hom_gf_type_id = $this -> GeneFamilies -> getHomologyCodingGeneFamilyType ();
$full_gene_info = $AnnotationModel -> getFullGeneInfo ( $gene_id );
pr ( $this -> controller );
$igv_genome_browser_info = $this -> GenomeBrowser -> getValidatedDataSettings ( $full_gene_info [ 'species' ],);
APP/Controller/AppController.php line 94 → DataUtilsComponent->getSidebarToolsInfo() $identifier = isset(( $this -> viewVars )[ "sidebar_information" ][ "id" ])?( $this -> viewVars )[ "sidebar_information" ][ "id" ]: null ;
if( $type === "gene_id" ){
$this -> set ( "sidebar" , "gene_sidebar" );
$this -> set ( "sidebar_info" , $this -> DataUtils -> getSidebarToolsInfo ( $identifier ));
}
CORE/Cake/Event/CakeEventManager.php line 243 → AppController->beforeRender() if ( $listener [ 'passParams' ] === true ) {
$result = call_user_func_array ( $listener [ 'callable' ], $event -> data );
} else {
$result = call_user_func ( $listener [ 'callable' ], $event );
}
CORE/Cake/Controller/Controller.php line 936 → CakeEventManager->dispatch() */
public function render ( $view = null , $layout = null ) {
$event = new CakeEvent ( 'Controller.beforeRender' , $this );
$this -> getEventManager ()-> dispatch ( $event );
if ( $event -> isStopped ()) {
CORE/Cake/Routing/Dispatcher.php line 200 → Controller->render() }
if ( $render && $controller -> autoRender ) {
$response = $controller -> render ();
} elseif (!( $result instanceof CakeResponse ) && $response -> body () === null ) {
CORE/Cake/Routing/Dispatcher.php line 167 → Dispatcher->_invoke() ));
}
$response = $this -> _invoke ( $controller , $request );
if (isset( $request -> params [ 'return' ])) {
APP/webroot/index.php line 151 → Dispatcher->dispatch() App :: uses ( 'Dispatcher' , 'Routing' );
$Dispatcher = new Dispatcher ();
$Dispatcher -> dispatch (new CakeRequest (), new CakeResponse (array( 'charset' => Configure :: read ( 'App.encoding' ))));