Fatal Error

Error: Allowed memory size of 402653184 bytes exhausted (tried to allocate 41943040 bytes)
File: /www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/Controller/OrthologsController.php
Line: 135

Notice: If you want to customize this error message, create app/View/Errors/fatal_error.ctp

( ! ) Xdebug: user triggered in /www/bioinformatics01_ro/plaza/_dev_instances/feedback/lib/Cake/View/Errors/fatal_error.ctp on line 37
Call Stack
#	Time	Memory	Function	Location
1	0.0014	434592	{main}( )	.../index.php:0
2	0.0376	1903776	Dispatcher->dispatch( $request = class CakeRequest { public $params = ['plugin' => NULL, 'controller' => 'orthologs', 'action' => 'explore', 'named' => [...], 'pass' => [...], 'models' => [...]]; public $data = []; public $query = []; public $url = 'orthologs/explore/Sopen11g018900/spe'; public $base = '/plaza.dev/_dev_instances/feedback'; public $webroot = '/plaza.dev/_dev_instances/feedback/'; public $here = '/plaza.dev/_dev_instances/feedback/orthologs/explore/Sopen11g018900/spe'; protected $_detectors = ['get' => [...], 'patch' => [...], 'post' => [...], 'put' => [...], 'delete' => [...], 'head' => [...], 'options' => [...], 'ssl' => [...], 'ajax' => [...], 'flash' => [...], 'mobile' => [...], 'requested' => [...], 'json' => [...], 'xml' => [...]]; protected $_input = '' }, $response = class CakeResponse { protected $_statusCodes = [100 => 'Continue', 101 => 'Switching Protocols', 200 => 'OK', 201 => 'Created', 202 => 'Accepted', 203 => 'Non-Authoritative Information', 204 => 'No Content', 205 => 'Reset Content', 206 => 'Partial Content', 300 => 'Multiple Choices', 301 => 'Moved Permanently', 302 => 'Found', 303 => 'See Other', 304 => 'Not Modified', 305 => 'Use Proxy', 307 => 'Temporary Redirect', 400 => 'Bad Request', 401 => 'Unauthorized', 402 => 'Payment Required', 403 => 'Forbidden', 404 => 'Not Found', 405 => 'Method Not Allowed', 406 => 'Not Acceptable', 407 => 'Proxy Authentication Required', 408 => 'Request Time-out', 409 => 'Conflict', 410 => 'Gone', 411 => 'Length Required', 412 => 'Precondition Failed', 413 => 'Request Entity Too Large', 414 => 'Request-URI Too Large', 415 => 'Unsupported Media Type', 416 => 'Requested range not satisfiable', 417 => 'Expectation Failed', 429 => 'Too Many Requests', 500 => 'Internal Server Error', 501 => 'Not Implemented', 502 => 'Bad Gateway', 503 => 'Service Unavailable', 504 => 'Gateway Time-out', 505 => 'Unsupported Version']; protected $_mimeTypes = ['html' => [...], 'json' => 'application/json', 'xml' => [...], 'rss' => 'application/rss+xml', 'ai' => 'application/postscript', 'bcpio' => 'application/x-bcpio', 'bin' => 'application/octet-stream', 'ccad' => 'application/clariscad', 'cdf' => 'application/x-netcdf', 'class' => 'application/octet-stream', 'cpio' => 'application/x-cpio', 'cpt' => 'application/mac-compactpro', 'csh' => 'application/x-csh', 'csv' => [...], 'dcr' => 'application/x-director', 'dir' => 'application/x-director', 'dms' => 'application/octet-stream', 'doc' => 'application/msword', 'docx' => 'application/vnd.openxmlformats-officedocument.wordprocessingml.document', 'drw' => 'application/drafting', 'dvi' => 'application/x-dvi', 'dwg' => 'application/acad', 'dxf' => 'application/dxf', 'dxr' => 'application/x-director', 'eot' => 'application/vnd.ms-fontobject', 'eps' => 'application/postscript', 'exe' => 'application/octet-stream', 'ez' => 'application/andrew-inset', 'flv' => 'video/x-flv', 'gtar' => 'application/x-gtar', 'gz' => 'application/x-gzip', 'bz2' => 'application/x-bzip', '7z' => 'application/x-7z-compressed', 'hdf' => 'application/x-hdf', 'hqx' => 'application/mac-binhex40', 'ico' => 'image/x-icon', 'ips' => 'application/x-ipscript', 'ipx' => 'application/x-ipix', 'js' => 'application/javascript', 'jsonapi' => 'application/vnd.api+json', 'latex' => 'application/x-latex', 'lha' => 'application/octet-stream', 'lsp' => 'application/x-lisp', 'lzh' => 'application/octet-stream', 'man' => 'application/x-troff-man', 'me' => 'application/x-troff-me', 'mif' => 'application/vnd.mif', 'ms' => 'application/x-troff-ms', 'nc' => 'application/x-netcdf', 'oda' => 'application/oda', 'otf' => 'font/otf', 'pdf' => 'application/pdf', 'pgn' => 'application/x-chess-pgn', 'pot' => 'application/vnd.ms-powerpoint', 'pps' => 'application/vnd.ms-powerpoint', 'ppt' => 'application/vnd.ms-powerpoint', 'pptx' => 'application/vnd.openxmlformats-officedocument.presentationml.presentation', 'ppz' => 'application/vnd.ms-powerpoint', 'pre' => 'application/x-freelance', 'prt' => 'application/pro_eng', 'ps' => 'application/postscript', 'roff' => 'application/x-troff', 'scm' => 'application/x-lotusscreencam', 'set' => 'application/set', 'sh' => 'application/x-sh', 'shar' => 'application/x-shar', 'sit' => 'application/x-stuffit', 'skd' => 'application/x-koan', 'skm' => 'application/x-koan', 'skp' => 'application/x-koan', 'skt' => 'application/x-koan', 'smi' => 'application/smil', 'smil' => 'application/smil', 'sol' => 'application/solids', 'spl' => 'application/x-futuresplash', 'src' => 'application/x-wais-source', 'step' => 'application/STEP', 'stl' => 'application/SLA', 'stp' => 'application/STEP', 'sv4cpio' => 'application/x-sv4cpio', 'sv4crc' => 'application/x-sv4crc', 'svg' => 'image/svg+xml', 'svgz' => 'image/svg+xml', 'swf' => 'application/x-shockwave-flash', 't' => 'application/x-troff', 'tar' => 'application/x-tar', 'tcl' => 'application/x-tcl', 'tex' => 'application/x-tex', 'texi' => 'application/x-texinfo', 'texinfo' => 'application/x-texinfo', 'tr' => 'application/x-troff', 'tsp' => 'application/dsptype', 'ttc' => 'font/ttf', 'ttf' => 'font/ttf', 'unv' => 'application/i-deas', 'ustar' => 'application/x-ustar', 'vcd' => 'application/x-cdlink', 'vda' => 'application/vda', 'xlc' => 'application/vnd.ms-excel', 'xll' => 'application/vnd.ms-excel', 'xlm' => 'application/vnd.ms-excel', 'xls' => 'application/vnd.ms-excel', 'xlsx' => 'application/vnd.openxmlformats-officedocument.spreadsheetml.sheet', 'xlw' => 'application/vnd.ms-excel', 'zip' => 'application/zip', 'aif' => 'audio/x-aiff', 'aifc' => 'audio/x-aiff', 'aiff' => 'audio/x-aiff', 'au' => 'audio/basic', 'kar' => 'audio/midi', 'mid' => 'audio/midi', 'midi' => 'audio/midi', 'mp2' => 'audio/mpeg', 'mp3' => 'audio/mpeg', 'mpga' => 'audio/mpeg', 'ogg' => 'audio/ogg', 'oga' => 'audio/ogg', 'spx' => 'audio/ogg', 'ra' => 'audio/x-realaudio', 'ram' => 'audio/x-pn-realaudio', 'rm' => 'audio/x-pn-realaudio', 'rpm' => 'audio/x-pn-realaudio-plugin', 'snd' => 'audio/basic', 'tsi' => 'audio/TSP-audio', 'wav' => 'audio/x-wav', 'aac' => 'audio/aac', 'asc' => 'text/plain', 'c' => 'text/plain', ...]; protected $_protocol = 'HTTP/1.1'; protected $_status = 200; protected $_contentType = 'text/html'; protected $_headers = []; protected $_body = NULL; protected $_file = NULL; protected $_fileRange = NULL; protected $_charset = 'UTF-8'; protected $_cacheDirectives = []; protected $_cookies = [] }, $additionalParams = ??? )	.../index.php:151
3	0.0583	2712280	Dispatcher->_invoke( $controller = class OrthologsController { public $name = 'Orthologs'; public $helpers = ['Session' => NULL, 'Html' => NULL, 'Form' => NULL, 'Cache' => NULL]; public $uses = [0 => 'Annotation', 1 => 'AnnotSource', 2 => 'Configuration', 3 => 'DnaMotifsCns', 4 => 'GfDatum', 5 => 'Msa', 6 => 'Orthologs', 7 => 'Similarities', 8 => 'Trees', 9 => 'AdExperiments', 10 => 'FunctionalClustersExperiments']; public $components = ['Session' => NULL, 'DataUtils' => NULL, 'FunctionalAnnotationUtils' => NULL, 'GeneFamilies' => NULL, 'Organism' => NULL, 'WorkbenchUtils' => NULL, 'Orthology' => NULL]; public $request = class CakeRequest { public $params = [...]; public $data = [...]; public $query = [...]; public $url = 'orthologs/explore/Sopen11g018900/spe'; public $base = '/plaza.dev/_dev_instances/feedback'; public $webroot = '/plaza.dev/_dev_instances/feedback/'; public $here = '/plaza.dev/_dev_instances/feedback/orthologs/explore/Sopen11g018900/spe'; protected $_detectors = [...]; protected $_input = '' }; public $response = class CakeResponse { protected $_statusCodes = [...]; protected $_mimeTypes = [...]; protected $_protocol = 'HTTP/1.1'; protected $_status = 200; protected $_contentType = 'text/html'; protected $_headers = [...]; protected $_body = NULL; protected $_file = NULL; protected $_fileRange = NULL; protected $_charset = 'UTF-8'; protected $_cacheDirectives = [...]; protected $_cookies = [...] }; protected $_responseClass = 'CakeResponse'; public $viewPath = 'Orthologs'; public $layoutPath = NULL; public $viewVars = ['num_paralogs' => 688, 'supporting_types' => [...], 'ortholog_types' => [...], 'all_organisms' => [...], 'target_species' => 'spe', 'query_species' => 'spe', 'query_gene' => 'Sopen11g018900', 'title_for_layout' => 'Dicots PLAZA 5.0 : Integrative Orthology']; public $view = 'explore'; public $layout = 'default'; public $autoRender = TRUE; public $autoLayout = TRUE; public $Components = class ComponentCollection { protected $_Controller = ...; protected $_enabled = [...]; protected $_loaded = [...]; public $defaultPriority = 10 }; public $viewClass = 'View'; public $View = NULL; public $ext = '.ctp'; public $plugin = NULL; public $cacheAction = FALSE; public $passedArgs = [0 => 'Sopen11g018900', 1 => 'spe']; public $scaffold = FALSE; public $methods = [1 => 'overview', 2 => 'explore', 3 => 'get_orthologs_type_data', 4 => 'get_supporting_data', 5 => 'get_supporting_type_data', 6 => 'get_orthologs_data']; public $modelClass = 'Annotation'; public $modelKey = 'ortholog'; public $validationErrors = NULL; protected $_mergeParent = 'AppController'; protected $_eventManager = class CakeEventManager { protected $_listeners = [...]; protected $_isGlobal = FALSE }; public $Session = class SessionComponent { protected $_Collection = class ComponentCollection { ... }; public $settings = [...]; public $components = [...]; protected $_componentMap = [...] }; public $DataUtils = class DataUtilsComponent { public $name = 'DataUtils'; public $controller = ...; public $components = [...]; protected $_Collection = class ComponentCollection { ... }; public $settings = [...]; protected $_componentMap = [...] }; public $FunctionalAnnotationUtils = class FunctionalAnnotationUtilsComponent { public $name = 'FunctionalAnnotationUtils'; public $controller = ...; public $components = [...]; protected $_Collection = class ComponentCollection { ... }; public $settings = [...]; protected $_componentMap = [...] }; public $GeneFamilies = class GeneFamiliesComponent { public $name = 'GeneFamilies'; private $controller = ...; protected $_Collection = class ComponentCollection { ... }; public $settings = [...]; public $components = [...]; protected $_componentMap = [...] }; public $Organism = class OrganismComponent { public $name = 'Organism'; private $controller = ...; public $components = [...]; protected $_Collection = class ComponentCollection { ... }; public $settings = [...]; protected $_componentMap = [...] }; public $WorkbenchUtils = class WorkbenchUtilsComponent { public $name = 'WorkbenchUtils'; private $controller = ...; public $components = [...]; protected $_Collection = class ComponentCollection { ... }; public $settings = [...]; protected $_componentMap = [...] }; public $Orthology = class OrthologyComponent { public $name = 'Orthology'; private $controller = ...; protected $_Collection = class ComponentCollection { ... }; public $settings = [...]; public $components = [...]; protected $_componentMap = [...] }; public $Annotation = class Annotation { public $name = 'Annotation'; public $useTable = 'annotation'; public $primaryKey = 'gene_id'; public $cacheQueries = FALSE; public $cacheSources = FALSE; public $belongsTo = [...]; public $hasMany = [...]; public $useDbConfig = 'default'; public $displayField = *uninitialized*; public $id = FALSE; public $data = [...]; public $schemaName = 'db_plaza_public_dicots_05'; public $table = 'annotation'; protected $_schema = [...]; public $validate = [...]; public $validationErrors = [...]; public $validationDomain = NULL; public $tablePrefix = ''; public $plugin = NULL; public $alias = 'Annotation'; public $tableToModel = [...]; public $hasOne = [...]; public $hasAndBelongsToMany = [...]; public $actsAs = NULL; public $Behaviors = class BehaviorCollection { ... }; public $whitelist = [...]; public $findQueryType = NULL; public $recursive = 1; public $order = NULL; public $virtualFields = [...]; protected $_associationKeys = [...]; protected $_associations = [...]; public $__backAssociation = [...]; public $__backInnerAssociation = [...]; public $__backOriginalAssociation = [...]; public $__backContainableAssociation = [...]; public $__safeUpdateMode = FALSE; public $useConsistentAfterFind = TRUE; protected $_insertID = NULL; protected $_sourceConfigured = TRUE; public $findMethods = [...]; protected $_eventManager = class CakeEventManager { ... }; protected $_validator = NULL }; public $AnnotSource = class AnnotSource { public $name = 'AnnotSource'; public $useTable = 'annot_sources'; public $primaryKey = 'species'; public $displayField = 'common_name'; public $useDbConfig = 'default'; public $id = FALSE; public $data = [...]; public $schemaName = 'db_plaza_public_dicots_05'; public $table = 'annot_sources'; protected $_schema = [...]; public $validate = [...]; public $validationErrors = [...]; public $validationDomain = NULL; public $tablePrefix = ''; public $plugin = NULL; public $alias = 'AnnotSource'; public $tableToModel = [...]; public $cacheQueries = FALSE; public $belongsTo = [...]; public $hasOne = [...]; public $hasMany = [...]; public $hasAndBelongsToMany = [...]; public $actsAs = NULL; public $Behaviors = class BehaviorCollection { ... }; public $whitelist = [...]; public $cacheSources = TRUE; public $findQueryType = NULL; public $recursive = 1; public $order = NULL; public $virtualFields = [...]; protected $_associationKeys = [...]; protected $_associations = [...]; public $__backAssociation = [...]; public $__backInnerAssociation = [...]; public $__backOriginalAssociation = [...]; public $__backContainableAssociation = [...]; public $__safeUpdateMode = FALSE; public $useConsistentAfterFind = TRUE; protected $_insertID = NULL; protected $_sourceConfigured = TRUE; public $findMethods = [...]; protected $_eventManager = class CakeEventManager { ... }; protected $_validator = NULL }; public $Configuration = class Configuration { public $name = 'Configuration'; public $useTable = 'configuration'; public $useDbConfig = 'default'; public $displayField = *uninitialized*; public $id = FALSE; public $data = [...]; public $schemaName = 'db_plaza_public_dicots_05'; public $table = 'configuration'; public $primaryKey = 'id'; protected $_schema = [...]; public $validate = [...]; public $validationErrors = [...]; public $validationDomain = NULL; public $tablePrefix = ''; public $plugin = NULL; public $alias = 'Configuration'; public $tableToModel = [...]; public $cacheQueries = FALSE; public $belongsTo = [...]; public $hasOne = [...]; public $hasMany = [...]; public $hasAndBelongsToMany = [...]; public $actsAs = NULL; public $Behaviors = class BehaviorCollection { ... }; public $whitelist = [...]; public $cacheSources = TRUE; public $findQueryType = NULL; public $recursive = 1; public $order = NULL; public $virtualFields = [...]; protected $_associationKeys = [...]; protected $_associations = [...]; public $__backAssociation = [...]; public $__backInnerAssociation = [...]; public $__backOriginalAssociation = [...]; public $__backContainableAssociation = [...]; public $__safeUpdateMode = FALSE; public $useConsistentAfterFind = TRUE; protected $_insertID = NULL; protected $_sourceConfigured = TRUE; public $findMethods = [...]; protected $_eventManager = class CakeEventManager { ... }; protected $_validator = NULL }; public $Orthologs = class Orthologs { public $name = 'Orthologs'; public $useTable = 'orthologs'; public $useDbConfig = 'default'; public $displayField = *uninitialized*; public $id = FALSE; public $data = [...]; public $schemaName = 'db_plaza_public_dicots_05'; public $table = 'orthologs'; public $primaryKey = 'id'; protected $_schema = [...]; public $validate = [...]; public $validationErrors = [...]; public $validationDomain = NULL; public $tablePrefix = ''; public $plugin = NULL; public $alias = 'Orthologs'; public $tableToModel = [...]; public $cacheQueries = FALSE; public $belongsTo = [...]; public $hasOne = [...]; public $hasMany = [...]; public $hasAndBelongsToMany = [...]; public $actsAs = NULL; public $Behaviors = class BehaviorCollection { ... }; public $whitelist = [...]; public $cacheSources = TRUE; public $findQueryType = NULL; public $recursive = 1; public $order = NULL; public $virtualFields = [...]; protected $_associationKeys = [...]; protected $_associations = [...]; public $__backAssociation = [...]; public $__backInnerAssociation = [...]; public $__backOriginalAssociation = [...]; public $__backContainableAssociation = [...]; public $__safeUpdateMode = FALSE; public $useConsistentAfterFind = TRUE; protected $_insertID = NULL; protected $_sourceConfigured = TRUE; public $findMethods = [...]; protected $_eventManager = class CakeEventManager { ... }; protected $_validator = NULL } }, $request = class CakeRequest { public $params = ['plugin' => NULL, 'controller' => 'orthologs', 'action' => 'explore', 'named' => [...], 'pass' => [...], 'models' => [...]]; public $data = []; public $query = []; public $url = 'orthologs/explore/Sopen11g018900/spe'; public $base = '/plaza.dev/_dev_instances/feedback'; public $webroot = '/plaza.dev/_dev_instances/feedback/'; public $here = '/plaza.dev/_dev_instances/feedback/orthologs/explore/Sopen11g018900/spe'; protected $_detectors = ['get' => [...], 'patch' => [...], 'post' => [...], 'put' => [...], 'delete' => [...], 'head' => [...], 'options' => [...], 'ssl' => [...], 'ajax' => [...], 'flash' => [...], 'mobile' => [...], 'requested' => [...], 'json' => [...], 'xml' => [...]]; protected $_input = '' } )	.../Dispatcher.php:167
4	0.0688	3124200	Controller->invokeAction( $request = class CakeRequest { public $params = ['plugin' => NULL, 'controller' => 'orthologs', 'action' => 'explore', 'named' => [...], 'pass' => [...], 'models' => [...]]; public $data = []; public $query = []; public $url = 'orthologs/explore/Sopen11g018900/spe'; public $base = '/plaza.dev/_dev_instances/feedback'; public $webroot = '/plaza.dev/_dev_instances/feedback/'; public $here = '/plaza.dev/_dev_instances/feedback/orthologs/explore/Sopen11g018900/spe'; protected $_detectors = ['get' => [...], 'patch' => [...], 'post' => [...], 'put' => [...], 'delete' => [...], 'head' => [...], 'options' => [...], 'ssl' => [...], 'ajax' => [...], 'flash' => [...], 'mobile' => [...], 'requested' => [...], 'json' => [...], 'xml' => [...]]; protected $_input = '' } )	.../Dispatcher.php:193
5	0.0689	3124312	invokeArgs( $object = class OrthologsController { public $name = 'Orthologs'; public $helpers = ['Session' => NULL, 'Html' => NULL, 'Form' => NULL, 'Cache' => NULL]; public $uses = [0 => 'Annotation', 1 => 'AnnotSource', 2 => 'Configuration', 3 => 'DnaMotifsCns', 4 => 'GfDatum', 5 => 'Msa', 6 => 'Orthologs', 7 => 'Similarities', 8 => 'Trees', 9 => 'AdExperiments', 10 => 'FunctionalClustersExperiments']; public $components = ['Session' => NULL, 'DataUtils' => NULL, 'FunctionalAnnotationUtils' => NULL, 'GeneFamilies' => NULL, 'Organism' => NULL, 'WorkbenchUtils' => NULL, 'Orthology' => NULL]; public $request = class CakeRequest { public $params = [...]; public $data = [...]; public $query = [...]; public $url = 'orthologs/explore/Sopen11g018900/spe'; public $base = '/plaza.dev/_dev_instances/feedback'; public $webroot = '/plaza.dev/_dev_instances/feedback/'; public $here = '/plaza.dev/_dev_instances/feedback/orthologs/explore/Sopen11g018900/spe'; protected $_detectors = [...]; protected $_input = '' }; public $response = class CakeResponse { protected $_statusCodes = [...]; protected $_mimeTypes = [...]; protected $_protocol = 'HTTP/1.1'; protected $_status = 200; protected $_contentType = 'text/html'; protected $_headers = [...]; protected $_body = NULL; protected $_file = NULL; protected $_fileRange = NULL; protected $_charset = 'UTF-8'; protected $_cacheDirectives = [...]; protected $_cookies = [...] }; protected $_responseClass = 'CakeResponse'; public $viewPath = 'Orthologs'; public $layoutPath = NULL; public $viewVars = ['num_paralogs' => 688, 'supporting_types' => [...], 'ortholog_types' => [...], 'all_organisms' => [...], 'target_species' => 'spe', 'query_species' => 'spe', 'query_gene' => 'Sopen11g018900', 'title_for_layout' => 'Dicots PLAZA 5.0 : Integrative Orthology']; public $view = 'explore'; public $layout = 'default'; public $autoRender = TRUE; public $autoLayout = TRUE; public $Components = class ComponentCollection { protected $_Controller = ...; protected $_enabled = [...]; protected $_loaded = [...]; public $defaultPriority = 10 }; public $viewClass = 'View'; public $View = NULL; public $ext = '.ctp'; public $plugin = NULL; public $cacheAction = FALSE; public $passedArgs = [0 => 'Sopen11g018900', 1 => 'spe']; public $scaffold = FALSE; public $methods = [1 => 'overview', 2 => 'explore', 3 => 'get_orthologs_type_data', 4 => 'get_supporting_data', 5 => 'get_supporting_type_data', 6 => 'get_orthologs_data']; public $modelClass = 'Annotation'; public $modelKey = 'ortholog'; public $validationErrors = NULL; protected $_mergeParent = 'AppController'; protected $_eventManager = class CakeEventManager { protected $_listeners = [...]; protected $_isGlobal = FALSE }; public $Session = class SessionComponent { protected $_Collection = class ComponentCollection { ... }; public $settings = [...]; public $components = [...]; protected $_componentMap = [...] }; public $DataUtils = class DataUtilsComponent { public $name = 'DataUtils'; public $controller = ...; public $components = [...]; protected $_Collection = class ComponentCollection { ... }; public $settings = [...]; protected $_componentMap = [...] }; public $FunctionalAnnotationUtils = class FunctionalAnnotationUtilsComponent { public $name = 'FunctionalAnnotationUtils'; public $controller = ...; public $components = [...]; protected $_Collection = class ComponentCollection { ... }; public $settings = [...]; protected $_componentMap = [...] }; public $GeneFamilies = class GeneFamiliesComponent { public $name = 'GeneFamilies'; private $controller = ...; protected $_Collection = class ComponentCollection { ... }; public $settings = [...]; public $components = [...]; protected $_componentMap = [...] }; public $Organism = class OrganismComponent { public $name = 'Organism'; private $controller = ...; public $components = [...]; protected $_Collection = class ComponentCollection { ... }; public $settings = [...]; protected $_componentMap = [...] }; public $WorkbenchUtils = class WorkbenchUtilsComponent { public $name = 'WorkbenchUtils'; private $controller = ...; public $components = [...]; protected $_Collection = class ComponentCollection { ... }; public $settings = [...]; protected $_componentMap = [...] }; public $Orthology = class OrthologyComponent { public $name = 'Orthology'; private $controller = ...; protected $_Collection = class ComponentCollection { ... }; public $settings = [...]; public $components = [...]; protected $_componentMap = [...] }; public $Annotation = class Annotation { public $name = 'Annotation'; public $useTable = 'annotation'; public $primaryKey = 'gene_id'; public $cacheQueries = FALSE; public $cacheSources = FALSE; public $belongsTo = [...]; public $hasMany = [...]; public $useDbConfig = 'default'; public $displayField = *uninitialized*; public $id = FALSE; public $data = [...]; public $schemaName = 'db_plaza_public_dicots_05'; public $table = 'annotation'; protected $_schema = [...]; public $validate = [...]; public $validationErrors = [...]; public $validationDomain = NULL; public $tablePrefix = ''; public $plugin = NULL; public $alias = 'Annotation'; public $tableToModel = [...]; public $hasOne = [...]; public $hasAndBelongsToMany = [...]; public $actsAs = NULL; public $Behaviors = class BehaviorCollection { ... }; public $whitelist = [...]; public $findQueryType = NULL; public $recursive = 1; public $order = NULL; public $virtualFields = [...]; protected $_associationKeys = [...]; protected $_associations = [...]; public $__backAssociation = [...]; public $__backInnerAssociation = [...]; public $__backOriginalAssociation = [...]; public $__backContainableAssociation = [...]; public $__safeUpdateMode = FALSE; public $useConsistentAfterFind = TRUE; protected $_insertID = NULL; protected $_sourceConfigured = TRUE; public $findMethods = [...]; protected $_eventManager = class CakeEventManager { ... }; protected $_validator = NULL }; public $AnnotSource = class AnnotSource { public $name = 'AnnotSource'; public $useTable = 'annot_sources'; public $primaryKey = 'species'; public $displayField = 'common_name'; public $useDbConfig = 'default'; public $id = FALSE; public $data = [...]; public $schemaName = 'db_plaza_public_dicots_05'; public $table = 'annot_sources'; protected $_schema = [...]; public $validate = [...]; public $validationErrors = [...]; public $validationDomain = NULL; public $tablePrefix = ''; public $plugin = NULL; public $alias = 'AnnotSource'; public $tableToModel = [...]; public $cacheQueries = FALSE; public $belongsTo = [...]; public $hasOne = [...]; public $hasMany = [...]; public $hasAndBelongsToMany = [...]; public $actsAs = NULL; public $Behaviors = class BehaviorCollection { ... }; public $whitelist = [...]; public $cacheSources = TRUE; public $findQueryType = NULL; public $recursive = 1; public $order = NULL; public $virtualFields = [...]; protected $_associationKeys = [...]; protected $_associations = [...]; public $__backAssociation = [...]; public $__backInnerAssociation = [...]; public $__backOriginalAssociation = [...]; public $__backContainableAssociation = [...]; public $__safeUpdateMode = FALSE; public $useConsistentAfterFind = TRUE; protected $_insertID = NULL; protected $_sourceConfigured = TRUE; public $findMethods = [...]; protected $_eventManager = class CakeEventManager { ... }; protected $_validator = NULL }; public $Configuration = class Configuration { public $name = 'Configuration'; public $useTable = 'configuration'; public $useDbConfig = 'default'; public $displayField = *uninitialized*; public $id = FALSE; public $data = [...]; public $schemaName = 'db_plaza_public_dicots_05'; public $table = 'configuration'; public $primaryKey = 'id'; protected $_schema = [...]; public $validate = [...]; public $validationErrors = [...]; public $validationDomain = NULL; public $tablePrefix = ''; public $plugin = NULL; public $alias = 'Configuration'; public $tableToModel = [...]; public $cacheQueries = FALSE; public $belongsTo = [...]; public $hasOne = [...]; public $hasMany = [...]; public $hasAndBelongsToMany = [...]; public $actsAs = NULL; public $Behaviors = class BehaviorCollection { ... }; public $whitelist = [...]; public $cacheSources = TRUE; public $findQueryType = NULL; public $recursive = 1; public $order = NULL; public $virtualFields = [...]; protected $_associationKeys = [...]; protected $_associations = [...]; public $__backAssociation = [...]; public $__backInnerAssociation = [...]; public $__backOriginalAssociation = [...]; public $__backContainableAssociation = [...]; public $__safeUpdateMode = FALSE; public $useConsistentAfterFind = TRUE; protected $_insertID = NULL; protected $_sourceConfigured = TRUE; public $findMethods = [...]; protected $_eventManager = class CakeEventManager { ... }; protected $_validator = NULL }; public $Orthologs = class Orthologs { public $name = 'Orthologs'; public $useTable = 'orthologs'; public $useDbConfig = 'default'; public $displayField = *uninitialized*; public $id = FALSE; public $data = [...]; public $schemaName = 'db_plaza_public_dicots_05'; public $table = 'orthologs'; public $primaryKey = 'id'; protected $_schema = [...]; public $validate = [...]; public $validationErrors = [...]; public $validationDomain = NULL; public $tablePrefix = ''; public $plugin = NULL; public $alias = 'Orthologs'; public $tableToModel = [...]; public $cacheQueries = FALSE; public $belongsTo = [...]; public $hasOne = [...]; public $hasMany = [...]; public $hasAndBelongsToMany = [...]; public $actsAs = NULL; public $Behaviors = class BehaviorCollection { ... }; public $whitelist = [...]; public $cacheSources = TRUE; public $findQueryType = NULL; public $recursive = 1; public $order = NULL; public $virtualFields = [...]; protected $_associationKeys = [...]; protected $_associations = [...]; public $__backAssociation = [...]; public $__backInnerAssociation = [...]; public $__backOriginalAssociation = [...]; public $__backContainableAssociation = [...]; public $__safeUpdateMode = FALSE; public $useConsistentAfterFind = TRUE; protected $_insertID = NULL; protected $_sourceConfigured = TRUE; public $findMethods = [...]; protected $_eventManager = class CakeEventManager { ... }; protected $_validator = NULL } }, $args = [0 => 'Sopen11g018900', 1 => 'spe'] )	.../Controller.php:491
6	0.0689	3124408	OrthologsController->explore( $query_gene = 'Sopen11g018900', $target_species = 'spe' )	.../Controller.php:491
7	2.6433	115614392	array_unique( $arg = [0 => 'Sopen12g010140', 1 => 'Sopen03g018700', 2 => 'Sopen04g009730', 3 => 'Sopen10g011660', 4 => 'Sopen04g013550', 5 => 'Sopen07g020670', 6 => 'Sopen10g009740', 7 => 'Sopen09g009700', 8 => 'Sopen03g026570', 9 => 'Sopen05g022010', 10 => 'Sopen06g005360', 11 => 'Sopen12g011040', 12 => 'Sopen07g019300', 13 => 'Sopen04g013600', 14 => 'Sopen02g005230', 15 => 'Sopen06g012280', 16 => 'Sopen04g014330', 17 => 'Sopen12g013520', 18 => 'Sopen07g011450', 19 => 'Sopen09g008840', 20 => 'Sopen02g006860', 21 => 'Sopen00g004260', 22 => 'Sopen04g010440', 23 => 'Sopen09g016360', 24 => 'Sopen07g018430', 25 => 'Sopen10g010670', 26 => 'Sopen10g011050', 27 => 'Sopen07g007670', 28 => 'Sopen11g015230', 29 => 'Sopen03g008570', 30 => 'Sopen10g013690', 31 => 'Sopen09g014290', 32 => 'Sopen11g015010', 33 => 'Sopen10g011020', 34 => 'Sopen09g019790', 35 => 'Sopen01g013240', 36 => 'Sopen09g014940', 37 => 'Sopen08g010430', 38 => 'Sopen02g004150', 39 => 'Sopen01g019350', 40 => 'Sopen05g020490', 41 => 'Sopen01g012360', 42 => 'Sopen03g009230', 43 => 'Sopen03g007940', 44 => 'Sopen01g011100', 45 => 'Sopen11g019200', 46 => 'Sopen05g016890', 47 => 'Sopen06g008360', 48 => 'Sopen12g015380', 49 => 'Sopen04g008160', 50 => 'Sopen06g008250', 51 => 'Sopen01g033770', 52 => 'Sopen05g017230', 53 => 'Sopen12g028080', 54 => 'Sopen12g015570', 55 => 'Sopen07g012200', 56 => 'Sopen03g018340', 57 => 'Sopen08g010050', 58 => 'Sopen03g010460', 59 => 'Sopen06g008300', 60 => 'Sopen01g022410', 61 => 'Sopen09g010920', 62 => 'Sopen08g014790', 63 => 'Sopen12g015360', 64 => 'Sopen04g015010', 65 => 'Sopen10g022870', 66 => 'Sopen01g011640', 67 => 'Sopen03g009220', 68 => 'Sopen03g011640', 69 => 'Sopen09g018290', 70 => 'Sopen02g001560', 71 => 'Sopen12g011450', 72 => 'Sopen03g019510', 73 => 'Sopen03g013970', 74 => 'Sopen12g010620', 75 => 'Sopen06g010270', 76 => 'Sopen07g015070', 77 => 'Sopen08g006190', 78 => 'Sopen12g008870', 79 => 'Sopen02g002300', 80 => 'Sopen06g008340', 81 => 'Sopen11g016670', 82 => 'Sopen11g014730', 83 => 'Sopen06g017400', 84 => 'Sopen07g011360', 85 => 'Sopen10g009470', 86 => 'Sopen11g023860', 87 => 'Sopen08g013730', 88 => 'Sopen04g017190', 89 => 'Sopen08g013090', 90 => 'Sopen01g015970', 91 => 'Sopen01g022850', 92 => 'Sopen09g009550', 93 => 'Sopen08g013900', 94 => 'Sopen10g015030', 95 => 'Sopen04g015910', 96 => 'Sopen06g011890', 97 => 'Sopen07g008150', 98 => 'Sopen01g020910', 99 => 'Sopen03g009790', 100 => 'Sopen09g010170', 101 => 'Sopen02g012620', 102 => 'Sopen07g009890', 103 => 'Sopen10g017180', 104 => 'Sopen09g010110', 105 => 'Sopen12g011730', 106 => 'Sopen02g004210', 107 => 'Sopen01g011820', 108 => 'Sopen06g008050', 109 => 'Sopen02g004950', 110 => 'Sopen09g019940', 111 => 'Sopen02g006330', 112 => 'Sopen10g012910', 113 => 'Sopen02g005260', 114 => 'Sopen06g013540', 115 => 'Sopen09g012910', 116 => 'Sopen05g012110', 117 => 'Sopen03g019170', 118 => 'Sopen04g020230', 119 => 'Sopen09g008760', 120 => 'Sopen10g014080', 121 => 'Sopen07g017480', 122 => 'Sopen07g020030', 123 => 'Sopen11g017000', 124 => 'Sopen12g019610', 125 => 'Sopen10g022770', 126 => 'Sopen04g016320', 127 => 'Sopen05g020640', ...] )	.../OrthologsController.php:135
8	2.6801	115669544	App::shutdown( )	.../App.php:0
9	2.6801	115669576	App::_checkFatalError( )	.../App.php:943
10	2.6801	115670320	ErrorHandler::handleError( $code = 1, $description = 'Allowed memory size of 402653184 bytes exhausted (tried to allocate 41943040 bytes)', $file = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/Controller/OrthologsController.php', $line = 135, $context = [] )	.../App.php:970
11	2.6801	115670320	ErrorHandler::handleFatalError( $code = 1, $description = 'Allowed memory size of 402653184 bytes exhausted (tried to allocate 41943040 bytes)', $file = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/Controller/OrthologsController.php', $line = 135 )	.../ErrorHandler.php:212
12	2.6827	115627616	ErrorHandler::handleException( $exception = class FatalErrorException { protected $_attributes = []; protected $_messageTemplate = ''; protected $_responseHeaders = NULL; protected $message = 'Allowed memory size of 402653184 bytes exhausted (tried to allocate 41943040 bytes)'; private ${Exception}string = ''; protected $code = 500; protected $file = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/Controller/OrthologsController.php'; protected $line = 135; private ${Exception}trace = [0 => [...], 1 => [...], 2 => [...], 3 => [...]]; private ${Exception}previous = NULL } )	.../ErrorHandler.php:269
13	2.6887	115702552	ExceptionRenderer->render( )	.../ErrorHandler.php:127
14	2.6887	115702552	ExceptionRenderer->_cakeError( $error = class FatalErrorException { protected $_attributes = []; protected $_messageTemplate = ''; protected $_responseHeaders = NULL; protected $message = 'Allowed memory size of 402653184 bytes exhausted (tried to allocate 41943040 bytes)'; private ${Exception}string = ''; protected $code = 500; protected $file = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/Controller/OrthologsController.php'; protected $line = 135; private ${Exception}trace = [0 => [...], 1 => [...], 2 => [...], 3 => [...]]; private ${Exception}previous = NULL } )	.../ExceptionRenderer.php:190
15	2.6888	115703536	ExceptionRenderer->_outputMessage( $template = 'fatalError' )	.../ExceptionRenderer.php:213
16	2.6888	115703536	Controller->render( $view = 'fatalError', $layout = ??? )	.../ExceptionRenderer.php:292
17	2.7574	116762976	View->render( $view = 'fatalError', $layout = NULL )	.../Controller.php:963
18	2.7576	116773128	View->_render( $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/lib/Cake/View/Errors/fatal_error.ctp', $data = ??? )	.../View.php:473
19	2.7576	116774072	View->_evaluate( $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/lib/Cake/View/Errors/fatal_error.ctp', $dataForView = ['navigation_bar_info' => ['num_colinearity_runs' => 1, 'num_colinearity_with_dating_runs' => 0, 'num_functional_clusters_runs' => 6, 'has_pan_genomes' => FALSE], 'code' => 500, 'name' => 'Allowed memory size of 402653184 bytes exhausted (tried to allocate 41943040 bytes)', 'message' => 'Allowed memory size of 402653184 bytes exhausted (tried to allocate 41943040 bytes)', 'url' => '/plaza.dev/_dev_instances/feedback/orthologs/explore/Sopen11g018900/spe', 'error' => class FatalErrorException { protected $_attributes = [...]; protected $_messageTemplate = ''; protected $_responseHeaders = NULL; protected $message = 'Allowed memory size of 402653184 bytes exhausted (tried to allocate 41943040 bytes)'; private ${Exception}string = ''; protected $code = 500; protected $file = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/Controller/OrthologsController.php'; protected $line = 135; private ${Exception}trace = [...]; private ${Exception}previous = NULL }, '_serialize' => [0 => 'code', 1 => 'name', 2 => 'message', 3 => 'url']] )	.../View.php:933
20	2.7605	116795816	include( '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/lib/Cake/View/Errors/fatal_error.ctp )	.../View.php:971
21	2.7728	117151512	xdebug_print_function_stack( )	.../fatal_error.ctp:37