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Call Stack
#TimeMemoryFunctionLocation
10.0012434512{main}( ).../index.php:0
20.03181903696Dispatcher->dispatch( $request = class CakeRequest { public $params = ['plugin' => NULL, 'controller' => 'orthologs', 'action' => 'explore', 'named' => [...], 'pass' => [...]]; public $data = []; public $query = []; public $url = 'orthologs/explore/PSO013G0260/pso'; public $base = '/plaza.dev/_dev_instances/feedback'; public $webroot = '/plaza.dev/_dev_instances/feedback/'; public $here = '/plaza.dev/_dev_instances/feedback/orthologs/explore/PSO013G0260/pso'; protected $_detectors = ['get' => [...], 'patch' => [...], 'post' => [...], 'put' => [...], 'delete' => [...], 'head' => [...], 'options' => [...], 'ssl' => [...], 'ajax' => [...], 'flash' => [...], 'mobile' => [...], 'requested' => [...], 'json' => [...], 'xml' => [...]]; protected $_input = '' }, $response = class CakeResponse { protected $_statusCodes = [100 => 'Continue', 101 => 'Switching Protocols', 200 => 'OK', 201 => 'Created', 202 => 'Accepted', 203 => 'Non-Authoritative Information', 204 => 'No Content', 205 => 'Reset Content', 206 => 'Partial Content', 300 => 'Multiple Choices', 301 => 'Moved Permanently', 302 => 'Found', 303 => 'See Other', 304 => 'Not Modified', 305 => 'Use Proxy', 307 => 'Temporary Redirect', 400 => 'Bad Request', 401 => 'Unauthorized', 402 => 'Payment Required', 403 => 'Forbidden', 404 => 'Not Found', 405 => 'Method Not Allowed', 406 => 'Not Acceptable', 407 => 'Proxy Authentication Required', 408 => 'Request Time-out', 409 => 'Conflict', 410 => 'Gone', 411 => 'Length Required', 412 => 'Precondition Failed', 413 => 'Request Entity Too Large', 414 => 'Request-URI Too Large', 415 => 'Unsupported Media Type', 416 => 'Requested range not satisfiable', 417 => 'Expectation Failed', 429 => 'Too Many Requests', 500 => 'Internal Server Error', 501 => 'Not Implemented', 502 => 'Bad Gateway', 503 => 'Service Unavailable', 504 => 'Gateway Time-out', 505 => 'Unsupported Version']; protected $_mimeTypes = ['html' => [...], 'json' => 'application/json', 'xml' => [...], 'rss' => 'application/rss+xml', 'ai' => 'application/postscript', 'bcpio' => 'application/x-bcpio', 'bin' => 'application/octet-stream', 'ccad' => 'application/clariscad', 'cdf' => 'application/x-netcdf', 'class' => 'application/octet-stream', 'cpio' => 'application/x-cpio', 'cpt' => 'application/mac-compactpro', 'csh' => 'application/x-csh', 'csv' => [...], 'dcr' => 'application/x-director', 'dir' => 'application/x-director', 'dms' => 'application/octet-stream', 'doc' => 'application/msword', 'docx' => 'application/vnd.openxmlformats-officedocument.wordprocessingml.document', 'drw' => 'application/drafting', 'dvi' => 'application/x-dvi', 'dwg' => 'application/acad', 'dxf' => 'application/dxf', 'dxr' => 'application/x-director', 'eot' => 'application/vnd.ms-fontobject', 'eps' => 'application/postscript', 'exe' => 'application/octet-stream', 'ez' => 'application/andrew-inset', 'flv' => 'video/x-flv', 'gtar' => 'application/x-gtar', 'gz' => 'application/x-gzip', 'bz2' => 'application/x-bzip', '7z' => 'application/x-7z-compressed', 'hdf' => 'application/x-hdf', 'hqx' => 'application/mac-binhex40', 'ico' => 'image/x-icon', 'ips' => 'application/x-ipscript', 'ipx' => 'application/x-ipix', 'js' => 'application/javascript', 'jsonapi' => 'application/vnd.api+json', 'latex' => 'application/x-latex', 'lha' => 'application/octet-stream', 'lsp' => 'application/x-lisp', 'lzh' => 'application/octet-stream', 'man' => 'application/x-troff-man', 'me' => 'application/x-troff-me', 'mif' => 'application/vnd.mif', 'ms' => 'application/x-troff-ms', 'nc' => 'application/x-netcdf', 'oda' => 'application/oda', 'otf' => 'font/otf', 'pdf' => 'application/pdf', 'pgn' => 'application/x-chess-pgn', 'pot' => 'application/vnd.ms-powerpoint', 'pps' => 'application/vnd.ms-powerpoint', 'ppt' => 'application/vnd.ms-powerpoint', 'pptx' => 'application/vnd.openxmlformats-officedocument.presentationml.presentation', 'ppz' => 'application/vnd.ms-powerpoint', 'pre' => 'application/x-freelance', 'prt' => 'application/pro_eng', 'ps' => 'application/postscript', 'roff' => 'application/x-troff', 'scm' => 'application/x-lotusscreencam', 'set' => 'application/set', 'sh' => 'application/x-sh', 'shar' => 'application/x-shar', 'sit' => 'application/x-stuffit', 'skd' => 'application/x-koan', 'skm' => 'application/x-koan', 'skp' => 'application/x-koan', 'skt' => 'application/x-koan', 'smi' => 'application/smil', 'smil' => 'application/smil', 'sol' => 'application/solids', 'spl' => 'application/x-futuresplash', 'src' => 'application/x-wais-source', 'step' => 'application/STEP', 'stl' => 'application/SLA', 'stp' => 'application/STEP', 'sv4cpio' => 'application/x-sv4cpio', 'sv4crc' => 'application/x-sv4crc', 'svg' => 'image/svg+xml', 'svgz' => 'image/svg+xml', 'swf' => 'application/x-shockwave-flash', 't' => 'application/x-troff', 'tar' => 'application/x-tar', 'tcl' => 'application/x-tcl', 'tex' => 'application/x-tex', 'texi' => 'application/x-texinfo', 'texinfo' => 'application/x-texinfo', 'tr' => 'application/x-troff', 'tsp' => 'application/dsptype', 'ttc' => 'font/ttf', 'ttf' => 'font/ttf', 'unv' => 'application/i-deas', 'ustar' => 'application/x-ustar', 'vcd' => 'application/x-cdlink', 'vda' => 'application/vda', 'xlc' => 'application/vnd.ms-excel', 'xll' => 'application/vnd.ms-excel', 'xlm' => 'application/vnd.ms-excel', 'xls' => 'application/vnd.ms-excel', 'xlsx' => 'application/vnd.openxmlformats-officedocument.spreadsheetml.sheet', 'xlw' => 'application/vnd.ms-excel', 'zip' => 'application/zip', 'aif' => 'audio/x-aiff', 'aifc' => 'audio/x-aiff', 'aiff' => 'audio/x-aiff', 'au' => 'audio/basic', 'kar' => 'audio/midi', 'mid' => 'audio/midi', 'midi' => 'audio/midi', 'mp2' => 'audio/mpeg', 'mp3' => 'audio/mpeg', 'mpga' => 'audio/mpeg', 'ogg' => 'audio/ogg', 'oga' => 'audio/ogg', 'spx' => 'audio/ogg', 'ra' => 'audio/x-realaudio', 'ram' => 'audio/x-pn-realaudio', 'rm' => 'audio/x-pn-realaudio', 'rpm' => 'audio/x-pn-realaudio-plugin', 'snd' => 'audio/basic', 'tsi' => 'audio/TSP-audio', 'wav' => 'audio/x-wav', 'aac' => 'audio/aac', 'asc' => 'text/plain', 'c' => 'text/plain', ...]; protected $_protocol = 'HTTP/1.1'; protected $_status = 200; protected $_contentType = 'text/html'; protected $_headers = []; protected $_body = NULL; protected $_file = NULL; protected $_fileRange = NULL; protected $_charset = 'UTF-8'; protected $_cacheDirectives = []; protected $_cookies = [] }, $additionalParams = ??? ).../index.php:151
30.05092712200Dispatcher->_invoke( $controller = class OrthologsController { public $name = 'Orthologs'; public $helpers = ['Session' => NULL, 'Html' => NULL, 'Form' => NULL, 'Cache' => NULL]; public $uses = [0 => 'Annotation', 1 => 'AnnotSource', 2 => 'Configuration', 3 => 'DnaMotifsCns', 4 => 'GfDatum', 5 => 'Msa', 6 => 'Orthologs', 7 => 'Similarities', 8 => 'Trees', 9 => 'AdExperiments', 10 => 'FunctionalClustersExperiments']; public $components = ['Session' => NULL, 'DataUtils' => NULL, 'FunctionalAnnotationUtils' => NULL, 'GeneFamilies' => NULL, 'Organism' => NULL, 'WorkbenchUtils' => NULL, 'Orthology' => NULL]; public $request = class CakeRequest { public $params = [...]; public $data = [...]; public $query = [...]; public $url = 'orthologs/explore/PSO013G0260/pso'; public $base = '/plaza.dev/_dev_instances/feedback'; public $webroot = '/plaza.dev/_dev_instances/feedback/'; public $here = '/plaza.dev/_dev_instances/feedback/orthologs/explore/PSO013G0260/pso'; protected $_detectors = [...]; protected $_input = '' }; public $response = class CakeResponse { protected $_statusCodes = [...]; protected $_mimeTypes = [...]; protected $_protocol = 'HTTP/1.1'; protected $_status = 200; protected $_contentType = 'text/html'; protected $_headers = [...]; protected $_body = NULL; protected $_file = NULL; protected $_fileRange = NULL; protected $_charset = 'UTF-8'; protected $_cacheDirectives = [...]; protected $_cookies = [...] }; protected $_responseClass = 'CakeResponse'; public $viewPath = 'Orthologs'; public $layoutPath = NULL; public $viewVars = ['num_paralogs' => 783, 'supporting_types' => [...], 'ortholog_types' => [...], 'all_organisms' => [...], 'target_species' => 'pso', 'query_species' => 'pso', 'query_gene' => 'PSO013G0260', 'title_for_layout' => 'Dicots PLAZA 5.0 : Integrative Orthology']; public $view = 'explore'; public $layout = 'default'; public $autoRender = TRUE; public $autoLayout = TRUE; public $Components = class ComponentCollection { protected $_Controller = ...; protected $_enabled = [...]; protected $_loaded = [...]; public $defaultPriority = 10 }; public $viewClass = 'View'; public $View = NULL; public $ext = '.ctp'; public $plugin = NULL; public $cacheAction = FALSE; public $passedArgs = [0 => 'PSO013G0260', 1 => 'pso']; public $scaffold = FALSE; public $methods = [1 => 'overview', 2 => 'explore', 3 => 'get_orthologs_type_data', 4 => 'get_supporting_data', 5 => 'get_supporting_type_data', 6 => 'get_orthologs_data']; public $modelClass = 'Annotation'; public $modelKey = 'ortholog'; public $validationErrors = NULL; protected $_mergeParent = 'AppController'; protected $_eventManager = class CakeEventManager { protected $_listeners = [...]; protected $_isGlobal = FALSE }; public $Session = class SessionComponent { protected $_Collection = class ComponentCollection { ... }; public $settings = [...]; public $components = [...]; protected $_componentMap = [...] }; public $DataUtils = class DataUtilsComponent { public $name = 'DataUtils'; public $controller = ...; public $components = [...]; protected $_Collection = class ComponentCollection { ... }; public $settings = [...]; protected $_componentMap = [...] }; public $FunctionalAnnotationUtils = class FunctionalAnnotationUtilsComponent { public $name = 'FunctionalAnnotationUtils'; public $controller = ...; public $components = [...]; protected $_Collection = class ComponentCollection { ... }; public $settings = [...]; protected $_componentMap = [...] }; public $GeneFamilies = class GeneFamiliesComponent { public $name = 'GeneFamilies'; private $controller = ...; protected $_Collection = class ComponentCollection { ... }; public $settings = [...]; public $components = [...]; protected $_componentMap = [...] }; public $Organism = class OrganismComponent { public $name = 'Organism'; private $controller = ...; public $components = [...]; protected $_Collection = class ComponentCollection { ... }; public $settings = [...]; protected $_componentMap = [...] }; public $WorkbenchUtils = class WorkbenchUtilsComponent { public $name = 'WorkbenchUtils'; private $controller = ...; public $components = [...]; protected $_Collection = class ComponentCollection { ... }; public $settings = [...]; protected $_componentMap = [...] }; public $Orthology = class OrthologyComponent { public $name = 'Orthology'; private $controller = ...; protected $_Collection = class ComponentCollection { ... }; public $settings = [...]; public $components = [...]; protected $_componentMap = [...] }; public $Annotation = class Annotation { public $name = 'Annotation'; public $useTable = 'annotation'; public $primaryKey = 'gene_id'; public $cacheQueries = FALSE; public $cacheSources = FALSE; public $belongsTo = [...]; public $hasMany = [...]; public $useDbConfig = 'default'; public $displayField = *uninitialized*; public $id = FALSE; public $data = [...]; public $schemaName = 'db_plaza_public_dicots_05'; public $table = 'annotation'; protected $_schema = [...]; public $validate = [...]; public $validationErrors = [...]; public $validationDomain = NULL; public $tablePrefix = ''; public $plugin = NULL; public $alias = 'Annotation'; public $tableToModel = [...]; public $hasOne = [...]; public $hasAndBelongsToMany = [...]; public $actsAs = NULL; public $Behaviors = class BehaviorCollection { ... }; public $whitelist = [...]; public $findQueryType = NULL; public $recursive = 1; public $order = NULL; public $virtualFields = [...]; protected $_associationKeys = [...]; protected $_associations = [...]; public $__backAssociation = [...]; public $__backInnerAssociation = [...]; public $__backOriginalAssociation = [...]; public $__backContainableAssociation = [...]; public $__safeUpdateMode = FALSE; public $useConsistentAfterFind = TRUE; protected $_insertID = NULL; protected $_sourceConfigured = TRUE; public $findMethods = [...]; protected $_eventManager = class CakeEventManager { ... }; protected $_validator = NULL }; public $AnnotSource = class AnnotSource { public $name = 'AnnotSource'; public $useTable = 'annot_sources'; public $primaryKey = 'species'; public $displayField = 'common_name'; public $useDbConfig = 'default'; public $id = FALSE; public $data = [...]; public $schemaName = 'db_plaza_public_dicots_05'; public $table = 'annot_sources'; protected $_schema = [...]; public $validate = [...]; public $validationErrors = [...]; public $validationDomain = NULL; public $tablePrefix = ''; public $plugin = NULL; public $alias = 'AnnotSource'; public $tableToModel = [...]; public $cacheQueries = FALSE; public $belongsTo = [...]; public $hasOne = [...]; public $hasMany = [...]; public $hasAndBelongsToMany = [...]; public $actsAs = NULL; public $Behaviors = class BehaviorCollection { ... }; public $whitelist = [...]; public $cacheSources = TRUE; public $findQueryType = NULL; public $recursive = 1; public $order = NULL; public $virtualFields = [...]; protected $_associationKeys = [...]; protected $_associations = [...]; public $__backAssociation = [...]; public $__backInnerAssociation = [...]; public $__backOriginalAssociation = [...]; public $__backContainableAssociation = [...]; public $__safeUpdateMode = FALSE; public $useConsistentAfterFind = TRUE; protected $_insertID = NULL; protected $_sourceConfigured = TRUE; public $findMethods = [...]; protected $_eventManager = class CakeEventManager { ... }; protected $_validator = NULL }; public $Configuration = class Configuration { public $name = 'Configuration'; public $useTable = 'configuration'; public $useDbConfig = 'default'; public $displayField = *uninitialized*; public $id = FALSE; public $data = [...]; public $schemaName = 'db_plaza_public_dicots_05'; public $table = 'configuration'; public $primaryKey = 'id'; protected $_schema = [...]; public $validate = [...]; public $validationErrors = [...]; public $validationDomain = NULL; public $tablePrefix = ''; public $plugin = NULL; public $alias = 'Configuration'; public $tableToModel = [...]; public $cacheQueries = FALSE; public $belongsTo = [...]; public $hasOne = [...]; public $hasMany = [...]; public $hasAndBelongsToMany = [...]; public $actsAs = NULL; public $Behaviors = class BehaviorCollection { ... }; public $whitelist = [...]; public $cacheSources = TRUE; public $findQueryType = NULL; public $recursive = 1; public $order = NULL; public $virtualFields = [...]; protected $_associationKeys = [...]; protected $_associations = [...]; public $__backAssociation = [...]; public $__backInnerAssociation = [...]; public $__backOriginalAssociation = [...]; public $__backContainableAssociation = [...]; public $__safeUpdateMode = FALSE; public $useConsistentAfterFind = TRUE; protected $_insertID = NULL; protected $_sourceConfigured = TRUE; public $findMethods = [...]; protected $_eventManager = class CakeEventManager { ... }; protected $_validator = NULL }; public $Orthologs = class Orthologs { public $name = 'Orthologs'; public $useTable = 'orthologs'; public $useDbConfig = 'default'; public $displayField = *uninitialized*; public $id = FALSE; public $data = [...]; public $schemaName = 'db_plaza_public_dicots_05'; public $table = 'orthologs'; public $primaryKey = 'id'; protected $_schema = [...]; public $validate = [...]; public $validationErrors = [...]; public $validationDomain = NULL; public $tablePrefix = ''; public $plugin = NULL; public $alias = 'Orthologs'; public $tableToModel = [...]; public $cacheQueries = FALSE; public $belongsTo = [...]; public $hasOne = [...]; public $hasMany = [...]; public $hasAndBelongsToMany = [...]; public $actsAs = NULL; public $Behaviors = class BehaviorCollection { ... }; public $whitelist = [...]; public $cacheSources = TRUE; public $findQueryType = NULL; public $recursive = 1; public $order = NULL; public $virtualFields = [...]; protected $_associationKeys = [...]; protected $_associations = [...]; public $__backAssociation = [...]; public $__backInnerAssociation = [...]; public $__backOriginalAssociation = [...]; public $__backContainableAssociation = [...]; public $__safeUpdateMode = FALSE; public $useConsistentAfterFind = TRUE; protected $_insertID = NULL; protected $_sourceConfigured = TRUE; public $findMethods = [...]; protected $_eventManager = class CakeEventManager { ... }; protected $_validator = NULL } }, $request = class CakeRequest { public $params = ['plugin' => NULL, 'controller' => 'orthologs', 'action' => 'explore', 'named' => [...], 'pass' => [...]]; public $data = []; public $query = []; public $url = 'orthologs/explore/PSO013G0260/pso'; public $base = '/plaza.dev/_dev_instances/feedback'; public $webroot = '/plaza.dev/_dev_instances/feedback/'; public $here = '/plaza.dev/_dev_instances/feedback/orthologs/explore/PSO013G0260/pso'; protected $_detectors = ['get' => [...], 'patch' => [...], 'post' => [...], 'put' => [...], 'delete' => [...], 'head' => [...], 'options' => [...], 'ssl' => [...], 'ajax' => [...], 'flash' => [...], 'mobile' => [...], 'requested' => [...], 'json' => [...], 'xml' => [...]]; protected $_input = '' } ).../Dispatcher.php:167
40.06253136096Controller->invokeAction( $request = class CakeRequest { public $params = ['plugin' => NULL, 'controller' => 'orthologs', 'action' => 'explore', 'named' => [...], 'pass' => [...]]; public $data = []; public $query = []; public $url = 'orthologs/explore/PSO013G0260/pso'; public $base = '/plaza.dev/_dev_instances/feedback'; public $webroot = '/plaza.dev/_dev_instances/feedback/'; public $here = '/plaza.dev/_dev_instances/feedback/orthologs/explore/PSO013G0260/pso'; protected $_detectors = ['get' => [...], 'patch' => [...], 'post' => [...], 'put' => [...], 'delete' => [...], 'head' => [...], 'options' => [...], 'ssl' => [...], 'ajax' => [...], 'flash' => [...], 'mobile' => [...], 'requested' => [...], 'json' => [...], 'xml' => [...]]; protected $_input = '' } ).../Dispatcher.php:193
50.06253136208invokeArgs( $object = class OrthologsController { public $name = 'Orthologs'; public $helpers = ['Session' => NULL, 'Html' => NULL, 'Form' => NULL, 'Cache' => NULL]; public $uses = [0 => 'Annotation', 1 => 'AnnotSource', 2 => 'Configuration', 3 => 'DnaMotifsCns', 4 => 'GfDatum', 5 => 'Msa', 6 => 'Orthologs', 7 => 'Similarities', 8 => 'Trees', 9 => 'AdExperiments', 10 => 'FunctionalClustersExperiments']; public $components = ['Session' => NULL, 'DataUtils' => NULL, 'FunctionalAnnotationUtils' => NULL, 'GeneFamilies' => NULL, 'Organism' => NULL, 'WorkbenchUtils' => NULL, 'Orthology' => NULL]; public $request = class CakeRequest { public $params = [...]; public $data = [...]; public $query = [...]; public $url = 'orthologs/explore/PSO013G0260/pso'; public $base = '/plaza.dev/_dev_instances/feedback'; public $webroot = '/plaza.dev/_dev_instances/feedback/'; public $here = '/plaza.dev/_dev_instances/feedback/orthologs/explore/PSO013G0260/pso'; protected $_detectors = [...]; protected $_input = '' }; public $response = class CakeResponse { protected $_statusCodes = [...]; protected $_mimeTypes = [...]; protected $_protocol = 'HTTP/1.1'; protected $_status = 200; protected $_contentType = 'text/html'; protected $_headers = [...]; protected $_body = NULL; protected $_file = NULL; protected $_fileRange = NULL; protected $_charset = 'UTF-8'; protected $_cacheDirectives = [...]; protected $_cookies = [...] }; protected $_responseClass = 'CakeResponse'; public $viewPath = 'Orthologs'; public $layoutPath = NULL; public $viewVars = ['num_paralogs' => 783, 'supporting_types' => [...], 'ortholog_types' => [...], 'all_organisms' => [...], 'target_species' => 'pso', 'query_species' => 'pso', 'query_gene' => 'PSO013G0260', 'title_for_layout' => 'Dicots PLAZA 5.0 : Integrative Orthology']; public $view = 'explore'; public $layout = 'default'; public $autoRender = TRUE; public $autoLayout = TRUE; public $Components = class ComponentCollection { protected $_Controller = ...; protected $_enabled = [...]; protected $_loaded = [...]; public $defaultPriority = 10 }; public $viewClass = 'View'; public $View = NULL; public $ext = '.ctp'; public $plugin = NULL; public $cacheAction = FALSE; public $passedArgs = [0 => 'PSO013G0260', 1 => 'pso']; public $scaffold = FALSE; public $methods = [1 => 'overview', 2 => 'explore', 3 => 'get_orthologs_type_data', 4 => 'get_supporting_data', 5 => 'get_supporting_type_data', 6 => 'get_orthologs_data']; public $modelClass = 'Annotation'; public $modelKey = 'ortholog'; public $validationErrors = NULL; protected $_mergeParent = 'AppController'; protected $_eventManager = class CakeEventManager { protected $_listeners = [...]; protected $_isGlobal = FALSE }; public $Session = class SessionComponent { protected $_Collection = class ComponentCollection { ... }; public $settings = [...]; public $components = [...]; protected $_componentMap = [...] }; public $DataUtils = class DataUtilsComponent { public $name = 'DataUtils'; public $controller = ...; public $components = [...]; protected $_Collection = class ComponentCollection { ... }; public $settings = [...]; protected $_componentMap = [...] }; public $FunctionalAnnotationUtils = class FunctionalAnnotationUtilsComponent { public $name = 'FunctionalAnnotationUtils'; public $controller = ...; public $components = [...]; protected $_Collection = class ComponentCollection { ... }; public $settings = [...]; protected $_componentMap = [...] }; public $GeneFamilies = class GeneFamiliesComponent { public $name = 'GeneFamilies'; private $controller = ...; protected $_Collection = class ComponentCollection { ... }; public $settings = [...]; public $components = [...]; protected $_componentMap = [...] }; public $Organism = class OrganismComponent { public $name = 'Organism'; private $controller = ...; public $components = [...]; protected $_Collection = class ComponentCollection { ... }; public $settings = [...]; protected $_componentMap = [...] }; public $WorkbenchUtils = class WorkbenchUtilsComponent { public $name = 'WorkbenchUtils'; private $controller = ...; public $components = [...]; protected $_Collection = class ComponentCollection { ... }; public $settings = [...]; protected $_componentMap = [...] }; public $Orthology = class OrthologyComponent { public $name = 'Orthology'; private $controller = ...; protected $_Collection = class ComponentCollection { ... }; public $settings = [...]; public $components = [...]; protected $_componentMap = [...] }; public $Annotation = class Annotation { public $name = 'Annotation'; public $useTable = 'annotation'; public $primaryKey = 'gene_id'; public $cacheQueries = FALSE; public $cacheSources = FALSE; public $belongsTo = [...]; public $hasMany = [...]; public $useDbConfig = 'default'; public $displayField = *uninitialized*; public $id = FALSE; public $data = [...]; public $schemaName = 'db_plaza_public_dicots_05'; public $table = 'annotation'; protected $_schema = [...]; public $validate = [...]; public $validationErrors = [...]; public $validationDomain = NULL; public $tablePrefix = ''; public $plugin = NULL; public $alias = 'Annotation'; public $tableToModel = [...]; public $hasOne = [...]; public $hasAndBelongsToMany = [...]; public $actsAs = NULL; public $Behaviors = class BehaviorCollection { ... }; public $whitelist = [...]; public $findQueryType = NULL; public $recursive = 1; public $order = NULL; public $virtualFields = [...]; protected $_associationKeys = [...]; protected $_associations = [...]; public $__backAssociation = [...]; public $__backInnerAssociation = [...]; public $__backOriginalAssociation = [...]; public $__backContainableAssociation = [...]; public $__safeUpdateMode = FALSE; public $useConsistentAfterFind = TRUE; protected $_insertID = NULL; protected $_sourceConfigured = TRUE; public $findMethods = [...]; protected $_eventManager = class CakeEventManager { ... }; protected $_validator = NULL }; public $AnnotSource = class AnnotSource { public $name = 'AnnotSource'; public $useTable = 'annot_sources'; public $primaryKey = 'species'; public $displayField = 'common_name'; public $useDbConfig = 'default'; public $id = FALSE; public $data = [...]; public $schemaName = 'db_plaza_public_dicots_05'; public $table = 'annot_sources'; protected $_schema = [...]; public $validate = [...]; public $validationErrors = [...]; public $validationDomain = NULL; public $tablePrefix = ''; public $plugin = NULL; public $alias = 'AnnotSource'; public $tableToModel = [...]; public $cacheQueries = FALSE; public $belongsTo = [...]; public $hasOne = [...]; public $hasMany = [...]; public $hasAndBelongsToMany = [...]; public $actsAs = NULL; public $Behaviors = class BehaviorCollection { ... }; public $whitelist = [...]; public $cacheSources = TRUE; public $findQueryType = NULL; public $recursive = 1; public $order = NULL; public $virtualFields = [...]; protected $_associationKeys = [...]; protected $_associations = [...]; public $__backAssociation = [...]; public $__backInnerAssociation = [...]; public $__backOriginalAssociation = [...]; public $__backContainableAssociation = [...]; public $__safeUpdateMode = FALSE; public $useConsistentAfterFind = TRUE; protected $_insertID = NULL; protected $_sourceConfigured = TRUE; public $findMethods = [...]; protected $_eventManager = class CakeEventManager { ... }; protected $_validator = NULL }; public $Configuration = class Configuration { public $name = 'Configuration'; public $useTable = 'configuration'; public $useDbConfig = 'default'; public $displayField = *uninitialized*; public $id = FALSE; public $data = [...]; public $schemaName = 'db_plaza_public_dicots_05'; public $table = 'configuration'; public $primaryKey = 'id'; protected $_schema = [...]; public $validate = [...]; public $validationErrors = [...]; public $validationDomain = NULL; public $tablePrefix = ''; public $plugin = NULL; public $alias = 'Configuration'; public $tableToModel = [...]; public $cacheQueries = FALSE; public $belongsTo = [...]; public $hasOne = [...]; public $hasMany = [...]; public $hasAndBelongsToMany = [...]; public $actsAs = NULL; public $Behaviors = class BehaviorCollection { ... }; public $whitelist = [...]; public $cacheSources = TRUE; public $findQueryType = NULL; public $recursive = 1; public $order = NULL; public $virtualFields = [...]; protected $_associationKeys = [...]; protected $_associations = [...]; public $__backAssociation = [...]; public $__backInnerAssociation = [...]; public $__backOriginalAssociation = [...]; public $__backContainableAssociation = [...]; public $__safeUpdateMode = FALSE; public $useConsistentAfterFind = TRUE; protected $_insertID = NULL; protected $_sourceConfigured = TRUE; public $findMethods = [...]; protected $_eventManager = class CakeEventManager { ... }; protected $_validator = NULL }; public $Orthologs = class Orthologs { public $name = 'Orthologs'; public $useTable = 'orthologs'; public $useDbConfig = 'default'; public $displayField = *uninitialized*; public $id = FALSE; public $data = [...]; public $schemaName = 'db_plaza_public_dicots_05'; public $table = 'orthologs'; public $primaryKey = 'id'; protected $_schema = [...]; public $validate = [...]; public $validationErrors = [...]; public $validationDomain = NULL; public $tablePrefix = ''; public $plugin = NULL; public $alias = 'Orthologs'; public $tableToModel = [...]; public $cacheQueries = FALSE; public $belongsTo = [...]; public $hasOne = [...]; public $hasMany = [...]; public $hasAndBelongsToMany = [...]; public $actsAs = NULL; public $Behaviors = class BehaviorCollection { ... }; public $whitelist = [...]; public $cacheSources = TRUE; public $findQueryType = NULL; public $recursive = 1; public $order = NULL; public $virtualFields = [...]; protected $_associationKeys = [...]; protected $_associations = [...]; public $__backAssociation = [...]; public $__backInnerAssociation = [...]; public $__backOriginalAssociation = [...]; public $__backContainableAssociation = [...]; public $__safeUpdateMode = FALSE; public $useConsistentAfterFind = TRUE; protected $_insertID = NULL; protected $_sourceConfigured = TRUE; public $findMethods = [...]; protected $_eventManager = class CakeEventManager { ... }; protected $_validator = NULL } }, $args = [0 => 'PSO013G0260', 1 => 'pso'] ).../Controller.php:491
60.06253136304OrthologsController->explore( $query_gene = 'PSO013G0260', $target_species = 'pso' ).../Controller.php:491
71.882365433176Hash::extract( $data = ['PSO013G0031' => ['ORTHO' => [...], 'BHIF' => [...]], 'PSO013G0260' => ['ORTHO' => [...], 'BHIF' => [...]], 'PSO017G0047' => ['ORTHO' => [...], 'BHIF' => [...]], 'PSO017G0212' => ['ORTHO' => [...], 'BHIF' => [...]], 'PSO017G0228' => ['ORTHO' => [...], 'BHIF' => [...]], 'PSO017G0303' => ['ORTHO' => [...], 'BHIF' => [...]], 'PSO017G0510' => ['ORTHO' => [...], 'BHIF' => [...]], 'PSO017G0520' => ['ORTHO' => [...], 'BHIF' => [...]], 'PSO017G0808' => ['ORTHO' => [...], 'BHIF' => [...]], 'PSO017G0857' => ['ORTHO' => [...], 'BHIF' => [...]], 'PSO017G0957' => ['ORTHO' => [...], 'BHIF' => [...]], 'PSO017G0976' => ['ORTHO' => [...], 'BHIF' => [...]], 'PSO017G1187' => ['ORTHO' => [...], 'BHIF' => [...]], 'PSO017G1242' => ['ORTHO' => [...], 'BHIF' => [...]], 'PSO017G1333' => ['ORTHO' => [...], 'BHIF' => [...]], 'PSO017G1369' => ['ORTHO' => [...], 'BHIF' => [...]], 'PSO017G1390' => ['ORTHO' => [...], 'BHIF' => [...]], 'PSO017G1395' => ['ORTHO' => [...], 'BHIF' => [...]], 'PSO017G1470' => ['ORTHO' => [...], 'BHIF' => [...]], 'PSO017G1471' => ['ORTHO' => [...], 'BHIF' => [...]], 'PSO017G1489' => ['ORTHO' => [...], 'BHIF' => [...]], 'PSO017G1834' => ['ORTHO' => [...], 'BHIF' => [...]], 'PSO017G1919' => ['ORTHO' => [...], 'BHIF' => [...], 'anchor_point' => [...]], 'PSO017G2182' => ['ORTHO' => [...], 'BHIF' => [...]], 'PSO017G2214' => ['ORTHO' => [...], 'BHIF' => [...]], 'PSO017G2217' => ['ORTHO' => [...], 'BHIF' => [...]], 'PSO017G2373' => ['ORTHO' => [...], 'BHIF' => [...]], 'PSO017G2506' => ['ORTHO' => [...], 'BHIF' => [...]], 'PSO017G2760' => ['ORTHO' => [...], 'BHIF' => [...], 'anchor_point' => [...]], 'PSO017G2762' => ['ORTHO' => [...], 'BHIF' => [...]], 'PSO017G2921' => ['ORTHO' => [...], 'BHIF' => [...]], 'PSO017G2972' => ['ORTHO' => [...], 'BHIF' => [...], 'anchor_point' => [...]], 'PSO017G3046' => ['ORTHO' => [...], 'BHIF' => [...]], 'PSO017G3061' => ['ORTHO' => [...], 'BHIF' => [...]], 'PSO017G3220' => ['ORTHO' => [...], 'BHIF' => [...]], 'PSO017G3235' => ['ORTHO' => [...], 'BHIF' => [...], 'anchor_point' => [...]], 'PSO017G3287' => ['ORTHO' => [...], 'BHIF' => [...], 'anchor_point' => [...]], 'PSO017G3530' => ['ORTHO' => [...], 'BHIF' => [...], 'anchor_point' => [...]], 'PSO017G3535' => ['ORTHO' => [...], 'BHIF' => [...]], 'PSO017G3568' => ['ORTHO' => [...], 'BHIF' => [...]], 'PSO017G3760' => ['ORTHO' => [...], 'BHIF' => [...]], 'PSO017G3976' => ['ORTHO' => [...], 'BHIF' => [...]], 'PSO017G4088' => ['ORTHO' => [...], 'BHIF' => [...]], 'PSO017G4383' => ['ORTHO' => [...], 'BHIF' => [...]], 'PSO017G4411' => ['ORTHO' => [...], 'BHIF' => [...]], 'PSO017G4428' => ['ORTHO' => [...], 'BHIF' => [...]], 'PSO017G4441' => ['ORTHO' => [...], 'BHIF' => [...]], 'PSO017G4467' => ['ORTHO' => [...], 'BHIF' => [...]], 'PSO017G4696' => ['ORTHO' => [...], 'BHIF' => [...]], 'PSO017G4995' => ['ORTHO' => [...], 'BHIF' => [...]], 'PSO017G5080' => ['ORTHO' => [...], 'BHIF' => [...]], 'PSO017G5091' => ['ORTHO' => [...], 'BHIF' => [...]], 'PSO017G5145' => ['ORTHO' => [...], 'BHIF' => [...]], 'PSO017G5264' => ['ORTHO' => [...], 'BHIF' => [...]], 'PSO017G5476' => ['ORTHO' => [...], 'BHIF' => [...], 'anchor_point' => [...]], 'PSO017G5492' => ['ORTHO' => [...], 'BHIF' => [...]], 'PSO017G5681' => ['ORTHO' => [...], 'BHIF' => [...]], 'PSO017G6159' => ['ORTHO' => [...], 'BHIF' => [...]], 'PSO017G6280' => ['ORTHO' => [...], 'BHIF' => [...]], 'PSO017G6330' => ['ORTHO' => [...], 'BHIF' => [...], 'anchor_point' => [...]], 'PSO017G6357' => ['ORTHO' => [...], 'BHIF' => [...]], 'PSO017G6616' => ['ORTHO' => [...], 'BHIF' => [...]], 'PSO017G6798' => ['ORTHO' => [...], 'BHIF' => [...]], 'PSO017G6835' => ['ORTHO' => [...], 'BHIF' => [...]], 'PSO017G6960' => ['ORTHO' => [...], 'BHIF' => [...]], 'PSO017G7127' => ['ORTHO' => [...], 'BHIF' => [...]], 'PSO017G7364' => ['ORTHO' => [...], 'BHIF' => [...]], 'PSO040G0023' => ['ORTHO' => [...], 'BHIF' => [...]], 'PSO061G0001' => ['ORTHO' => [...], 'BHIF' => [...]], 'PSO063G0039' => ['ORTHO' => [...], 'BHIF' => [...]], 'PSO063G0103' => ['ORTHO' => [...], 'BHIF' => [...], 'anchor_point' => [...]], 'PSO063G0335' => ['ORTHO' => [...], 'BHIF' => [...], 'anchor_point' => [...]], 'PSO063G0448' => ['ORTHO' => [...], 'BHIF' => [...]], 'PSO063G0558' => ['ORTHO' => [...], 'BHIF' => [...]], 'PSO063G0729' => ['ORTHO' => [...], 'BHIF' => [...]], 'PSO063G0763' => ['ORTHO' => [...], 'BHIF' => [...]], 'PSO063G0768' => ['ORTHO' => [...], 'BHIF' => [...]], 'PSO063G0844' => ['ORTHO' => [...], 'BHIF' => [...], 'anchor_point' => [...]], 'PSO063G0862' => ['ORTHO' => [...], 'BHIF' => [...]], 'PSO063G0891' => ['ORTHO' => [...], 'BHIF' => [...]], 'PSO063G1041' => ['ORTHO' => [...], 'BHIF' => [...]], 'PSO063G1176' => ['ORTHO' => [...], 'BHIF' => [...], 'anchor_point' => [...]], 'PSO063G1199' => ['ORTHO' => [...], 'BHIF' => [...]], 'PSO063G1212' => ['ORTHO' => [...], 'BHIF' => [...]], 'PSO063G1566' => ['ORTHO' => [...], 'BHIF' => [...], 'anchor_point' => [...]], 'PSO063G1595' => ['ORTHO' => [...], 'BHIF' => [...]], 'PSO063G1748' => ['ORTHO' => [...], 'BHIF' => [...]], 'PSO063G1906' => ['ORTHO' => [...], 'BHIF' => [...]], 'PSO063G2021' => ['ORTHO' => [...], 'BHIF' => [...], 'anchor_point' => [...]], 'PSO063G2037' => ['ORTHO' => [...], 'BHIF' => [...]], 'PSO063G2062' => ['ORTHO' => [...], 'BHIF' => [...]], 'PSO063G2233' => ['ORTHO' => [...], 'BHIF' => [...]], 'PSO063G2385' => ['ORTHO' => [...], 'BHIF' => [...]], 'PSO063G2458' => ['ORTHO' => [...], 'BHIF' => [...]], 'PSO063G2629' => ['ORTHO' => [...], 'BHIF' => [...]], 'PSO063G2685' => ['ORTHO' => [...], 'BHIF' => [...]], 'PSO063G2690' => ['ORTHO' => [...], 'BHIF' => [...]], 'PSO063G2714' => ['ORTHO' => [...], 'BHIF' => [...]], 'PSO063G2825' => ['ORTHO' => [...], 'BHIF' => [...], 'anchor_point' => [...]], 'PSO063G2977' => ['ORTHO' => [...], 'BHIF' => [...]], 'PSO063G3131' => ['ORTHO' => [...], 'BHIF' => [...]], 'PSO063G3214' => ['ORTHO' => [...], 'BHIF' => [...], 'anchor_point' => [...]], 'PSO063G3357' => ['ORTHO' => [...], 'BHIF' => [...]], 'PSO063G3360' => ['ORTHO' => [...], 'BHIF' => [...]], 'PSO063G3371' => ['ORTHO' => [...], 'BHIF' => [...]], 'PSO063G3467' => ['ORTHO' => [...], 'BHIF' => [...]], 'PSO063G3571' => ['ORTHO' => [...], 'BHIF' => [...]], 'PSO063G3576' => ['ORTHO' => [...], 'BHIF' => [...]], 'PSO063G3609' => ['ORTHO' => [...], 'BHIF' => [...]], 'PSO063G3623' => ['ORTHO' => [...], 'BHIF' => [...]], 'PSO063G3697' => ['ORTHO' => [...], 'BHIF' => [...]], 'PSO063G3784' => ['ORTHO' => [...], 'BHIF' => [...]], 'PSO063G3795' => ['ORTHO' => [...], 'BHIF' => [...]], 'PSO063G4266' => ['ORTHO' => [...], 'BHIF' => [...]], 'PSO063G4287' => ['ORTHO' => [...], 'BHIF' => [...]], 'PSO063G4319' => ['ORTHO' => [...], 'BHIF' => [...], 'anchor_point' => [...]], 'PSO063G4338' => ['ORTHO' => [...], 'BHIF' => [...]], 'PSO063G4608' => ['ORTHO' => [...], 'BHIF' => [...]], 'PSO063G4661' => ['ORTHO' => [...], 'BHIF' => [...]], 'PSO063G4674' => ['ORTHO' => [...], 'BHIF' => [...]], 'PSO063G4677' => ['ORTHO' => [...], 'BHIF' => [...]], 'PSO063G4704' => ['ORTHO' => [...], 'BHIF' => [...]], 'PSO063G5061' => ['ORTHO' => [...], 'BHIF' => [...]], 'PSO063G5130' => ['ORTHO' => [...], 'BHIF' => [...]], 'PSO063G5132' => ['ORTHO' => [...], 'BHIF' => [...]], 'PSO063G5302' => ['ORTHO' => [...], 'BHIF' => [...], 'anchor_point' => [...]], 'PSO063G5487' => ['ORTHO' => [...], 'BHIF' => [...]], 'PSO063G5564' => ['ORTHO' => [...], 'BHIF' => [...]], ...], $path = '{s}.{s}.{n}' ).../OrthologsController.php:135
 Errors

Fatal Error

Error: Allowed memory size of 402653184 bytes exhausted (tried to allocate 8388616 bytes)
File: /www/bioinformatics01_ro/plaza/_dev_instances/feedback/lib/Cake/Utility/Hash.php
Line: 132

Notice: If you want to customize this error message, create app/View/Errors/fatal_error.ctp


( ! ) Xdebug: user triggered in /www/bioinformatics01_ro/plaza/_dev_instances/feedback/lib/Cake/View/Errors/fatal_error.ctp on line 37
Call Stack
#TimeMemoryFunctionLocation
10.0012434512{main}( ).../index.php:0
20.03181903696Dispatcher->dispatch( $request = class CakeRequest { public $params = ['plugin' => NULL, 'controller' => 'orthologs', 'action' => 'explore', 'named' => [...], 'pass' => [...], 'models' => [...]]; public $data = []; public $query = []; public $url = 'orthologs/explore/PSO013G0260/pso'; public $base = '/plaza.dev/_dev_instances/feedback'; public $webroot = '/plaza.dev/_dev_instances/feedback/'; public $here = '/plaza.dev/_dev_instances/feedback/orthologs/explore/PSO013G0260/pso'; protected $_detectors = ['get' => [...], 'patch' => [...], 'post' => [...], 'put' => [...], 'delete' => [...], 'head' => [...], 'options' => [...], 'ssl' => [...], 'ajax' => [...], 'flash' => [...], 'mobile' => [...], 'requested' => [...], 'json' => [...], 'xml' => [...]]; protected $_input = '' }, $response = class CakeResponse { protected $_statusCodes = [100 => 'Continue', 101 => 'Switching Protocols', 200 => 'OK', 201 => 'Created', 202 => 'Accepted', 203 => 'Non-Authoritative Information', 204 => 'No Content', 205 => 'Reset Content', 206 => 'Partial Content', 300 => 'Multiple Choices', 301 => 'Moved Permanently', 302 => 'Found', 303 => 'See Other', 304 => 'Not Modified', 305 => 'Use Proxy', 307 => 'Temporary Redirect', 400 => 'Bad Request', 401 => 'Unauthorized', 402 => 'Payment Required', 403 => 'Forbidden', 404 => 'Not Found', 405 => 'Method Not Allowed', 406 => 'Not Acceptable', 407 => 'Proxy Authentication Required', 408 => 'Request Time-out', 409 => 'Conflict', 410 => 'Gone', 411 => 'Length Required', 412 => 'Precondition Failed', 413 => 'Request Entity Too Large', 414 => 'Request-URI Too Large', 415 => 'Unsupported Media Type', 416 => 'Requested range not satisfiable', 417 => 'Expectation Failed', 429 => 'Too Many Requests', 500 => 'Internal Server Error', 501 => 'Not Implemented', 502 => 'Bad Gateway', 503 => 'Service Unavailable', 504 => 'Gateway Time-out', 505 => 'Unsupported Version']; protected $_mimeTypes = ['html' => [...], 'json' => 'application/json', 'xml' => [...], 'rss' => 'application/rss+xml', 'ai' => 'application/postscript', 'bcpio' => 'application/x-bcpio', 'bin' => 'application/octet-stream', 'ccad' => 'application/clariscad', 'cdf' => 'application/x-netcdf', 'class' => 'application/octet-stream', 'cpio' => 'application/x-cpio', 'cpt' => 'application/mac-compactpro', 'csh' => 'application/x-csh', 'csv' => [...], 'dcr' => 'application/x-director', 'dir' => 'application/x-director', 'dms' => 'application/octet-stream', 'doc' => 'application/msword', 'docx' => 'application/vnd.openxmlformats-officedocument.wordprocessingml.document', 'drw' => 'application/drafting', 'dvi' => 'application/x-dvi', 'dwg' => 'application/acad', 'dxf' => 'application/dxf', 'dxr' => 'application/x-director', 'eot' => 'application/vnd.ms-fontobject', 'eps' => 'application/postscript', 'exe' => 'application/octet-stream', 'ez' => 'application/andrew-inset', 'flv' => 'video/x-flv', 'gtar' => 'application/x-gtar', 'gz' => 'application/x-gzip', 'bz2' => 'application/x-bzip', '7z' => 'application/x-7z-compressed', 'hdf' => 'application/x-hdf', 'hqx' => 'application/mac-binhex40', 'ico' => 'image/x-icon', 'ips' => 'application/x-ipscript', 'ipx' => 'application/x-ipix', 'js' => 'application/javascript', 'jsonapi' => 'application/vnd.api+json', 'latex' => 'application/x-latex', 'lha' => 'application/octet-stream', 'lsp' => 'application/x-lisp', 'lzh' => 'application/octet-stream', 'man' => 'application/x-troff-man', 'me' => 'application/x-troff-me', 'mif' => 'application/vnd.mif', 'ms' => 'application/x-troff-ms', 'nc' => 'application/x-netcdf', 'oda' => 'application/oda', 'otf' => 'font/otf', 'pdf' => 'application/pdf', 'pgn' => 'application/x-chess-pgn', 'pot' => 'application/vnd.ms-powerpoint', 'pps' => 'application/vnd.ms-powerpoint', 'ppt' => 'application/vnd.ms-powerpoint', 'pptx' => 'application/vnd.openxmlformats-officedocument.presentationml.presentation', 'ppz' => 'application/vnd.ms-powerpoint', 'pre' => 'application/x-freelance', 'prt' => 'application/pro_eng', 'ps' => 'application/postscript', 'roff' => 'application/x-troff', 'scm' => 'application/x-lotusscreencam', 'set' => 'application/set', 'sh' => 'application/x-sh', 'shar' => 'application/x-shar', 'sit' => 'application/x-stuffit', 'skd' => 'application/x-koan', 'skm' => 'application/x-koan', 'skp' => 'application/x-koan', 'skt' => 'application/x-koan', 'smi' => 'application/smil', 'smil' => 'application/smil', 'sol' => 'application/solids', 'spl' => 'application/x-futuresplash', 'src' => 'application/x-wais-source', 'step' => 'application/STEP', 'stl' => 'application/SLA', 'stp' => 'application/STEP', 'sv4cpio' => 'application/x-sv4cpio', 'sv4crc' => 'application/x-sv4crc', 'svg' => 'image/svg+xml', 'svgz' => 'image/svg+xml', 'swf' => 'application/x-shockwave-flash', 't' => 'application/x-troff', 'tar' => 'application/x-tar', 'tcl' => 'application/x-tcl', 'tex' => 'application/x-tex', 'texi' => 'application/x-texinfo', 'texinfo' => 'application/x-texinfo', 'tr' => 'application/x-troff', 'tsp' => 'application/dsptype', 'ttc' => 'font/ttf', 'ttf' => 'font/ttf', 'unv' => 'application/i-deas', 'ustar' => 'application/x-ustar', 'vcd' => 'application/x-cdlink', 'vda' => 'application/vda', 'xlc' => 'application/vnd.ms-excel', 'xll' => 'application/vnd.ms-excel', 'xlm' => 'application/vnd.ms-excel', 'xls' => 'application/vnd.ms-excel', 'xlsx' => 'application/vnd.openxmlformats-officedocument.spreadsheetml.sheet', 'xlw' => 'application/vnd.ms-excel', 'zip' => 'application/zip', 'aif' => 'audio/x-aiff', 'aifc' => 'audio/x-aiff', 'aiff' => 'audio/x-aiff', 'au' => 'audio/basic', 'kar' => 'audio/midi', 'mid' => 'audio/midi', 'midi' => 'audio/midi', 'mp2' => 'audio/mpeg', 'mp3' => 'audio/mpeg', 'mpga' => 'audio/mpeg', 'ogg' => 'audio/ogg', 'oga' => 'audio/ogg', 'spx' => 'audio/ogg', 'ra' => 'audio/x-realaudio', 'ram' => 'audio/x-pn-realaudio', 'rm' => 'audio/x-pn-realaudio', 'rpm' => 'audio/x-pn-realaudio-plugin', 'snd' => 'audio/basic', 'tsi' => 'audio/TSP-audio', 'wav' => 'audio/x-wav', 'aac' => 'audio/aac', 'asc' => 'text/plain', 'c' => 'text/plain', ...]; protected $_protocol = 'HTTP/1.1'; protected $_status = 200; protected $_contentType = 'text/html'; protected $_headers = []; protected $_body = NULL; protected $_file = NULL; protected $_fileRange = NULL; protected $_charset = 'UTF-8'; protected $_cacheDirectives = []; protected $_cookies = [] }, $additionalParams = ??? ).../index.php:151
30.05092712200Dispatcher->_invoke( $controller = class OrthologsController { public $name = 'Orthologs'; public $helpers = ['Session' => NULL, 'Html' => NULL, 'Form' => NULL, 'Cache' => NULL]; public $uses = [0 => 'Annotation', 1 => 'AnnotSource', 2 => 'Configuration', 3 => 'DnaMotifsCns', 4 => 'GfDatum', 5 => 'Msa', 6 => 'Orthologs', 7 => 'Similarities', 8 => 'Trees', 9 => 'AdExperiments', 10 => 'FunctionalClustersExperiments']; public $components = ['Session' => NULL, 'DataUtils' => NULL, 'FunctionalAnnotationUtils' => NULL, 'GeneFamilies' => NULL, 'Organism' => NULL, 'WorkbenchUtils' => NULL, 'Orthology' => NULL]; public $request = class CakeRequest { public $params = [...]; public $data = [...]; public $query = [...]; public $url = 'orthologs/explore/PSO013G0260/pso'; public $base = '/plaza.dev/_dev_instances/feedback'; public $webroot = '/plaza.dev/_dev_instances/feedback/'; public $here = '/plaza.dev/_dev_instances/feedback/orthologs/explore/PSO013G0260/pso'; protected $_detectors = [...]; protected $_input = '' }; public $response = class CakeResponse { protected $_statusCodes = [...]; protected $_mimeTypes = [...]; protected $_protocol = 'HTTP/1.1'; protected $_status = 200; protected $_contentType = 'text/html'; protected $_headers = [...]; protected $_body = NULL; protected $_file = NULL; protected $_fileRange = NULL; protected $_charset = 'UTF-8'; protected $_cacheDirectives = [...]; protected $_cookies = [...] }; protected $_responseClass = 'CakeResponse'; public $viewPath = 'Orthologs'; public $layoutPath = NULL; public $viewVars = ['num_paralogs' => 783, 'supporting_types' => [...], 'ortholog_types' => [...], 'all_organisms' => [...], 'target_species' => 'pso', 'query_species' => 'pso', 'query_gene' => 'PSO013G0260', 'title_for_layout' => 'Dicots PLAZA 5.0 : Integrative Orthology']; public $view = 'explore'; public $layout = 'default'; public $autoRender = TRUE; public $autoLayout = TRUE; public $Components = class ComponentCollection { protected $_Controller = ...; protected $_enabled = [...]; protected $_loaded = [...]; public $defaultPriority = 10 }; public $viewClass = 'View'; public $View = NULL; public $ext = '.ctp'; public $plugin = NULL; public $cacheAction = FALSE; public $passedArgs = [0 => 'PSO013G0260', 1 => 'pso']; public $scaffold = FALSE; public $methods = [1 => 'overview', 2 => 'explore', 3 => 'get_orthologs_type_data', 4 => 'get_supporting_data', 5 => 'get_supporting_type_data', 6 => 'get_orthologs_data']; public $modelClass = 'Annotation'; public $modelKey = 'ortholog'; public $validationErrors = NULL; protected $_mergeParent = 'AppController'; protected $_eventManager = class CakeEventManager { protected $_listeners = [...]; protected $_isGlobal = FALSE }; public $Session = class SessionComponent { protected $_Collection = class ComponentCollection { ... }; public $settings = [...]; public $components = [...]; protected $_componentMap = [...] }; public $DataUtils = class DataUtilsComponent { public $name = 'DataUtils'; public $controller = ...; public $components = [...]; protected $_Collection = class ComponentCollection { ... }; public $settings = [...]; protected $_componentMap = [...] }; public $FunctionalAnnotationUtils = class FunctionalAnnotationUtilsComponent { public $name = 'FunctionalAnnotationUtils'; public $controller = ...; public $components = [...]; protected $_Collection = class ComponentCollection { ... }; public $settings = [...]; protected $_componentMap = [...] }; public $GeneFamilies = class GeneFamiliesComponent { public $name = 'GeneFamilies'; private $controller = ...; protected $_Collection = class ComponentCollection { ... }; public $settings = [...]; public $components = [...]; protected $_componentMap = [...] }; public $Organism = class OrganismComponent { public $name = 'Organism'; private $controller = ...; public $components = [...]; protected $_Collection = class ComponentCollection { ... }; public $settings = [...]; protected $_componentMap = [...] }; public $WorkbenchUtils = class WorkbenchUtilsComponent { public $name = 'WorkbenchUtils'; private $controller = ...; public $components = [...]; protected $_Collection = class ComponentCollection { ... }; public $settings = [...]; protected $_componentMap = [...] }; public $Orthology = class OrthologyComponent { public $name = 'Orthology'; private $controller = ...; protected $_Collection = class ComponentCollection { ... }; public $settings = [...]; public $components = [...]; protected $_componentMap = [...] }; public $Annotation = class Annotation { public $name = 'Annotation'; public $useTable = 'annotation'; public $primaryKey = 'gene_id'; public $cacheQueries = FALSE; public $cacheSources = FALSE; public $belongsTo = [...]; public $hasMany = [...]; public $useDbConfig = 'default'; public $displayField = *uninitialized*; public $id = FALSE; public $data = [...]; public $schemaName = 'db_plaza_public_dicots_05'; public $table = 'annotation'; protected $_schema = [...]; public $validate = [...]; public $validationErrors = [...]; public $validationDomain = NULL; public $tablePrefix = ''; public $plugin = NULL; public $alias = 'Annotation'; public $tableToModel = [...]; public $hasOne = [...]; public $hasAndBelongsToMany = [...]; public $actsAs = NULL; public $Behaviors = class BehaviorCollection { ... }; public $whitelist = [...]; public $findQueryType = NULL; public $recursive = 1; public $order = NULL; public $virtualFields = [...]; protected $_associationKeys = [...]; protected $_associations = [...]; public $__backAssociation = [...]; public $__backInnerAssociation = [...]; public $__backOriginalAssociation = [...]; public $__backContainableAssociation = [...]; public $__safeUpdateMode = FALSE; public $useConsistentAfterFind = TRUE; protected $_insertID = NULL; protected $_sourceConfigured = TRUE; public $findMethods = [...]; protected $_eventManager = class CakeEventManager { ... }; protected $_validator = NULL }; public $AnnotSource = class AnnotSource { public $name = 'AnnotSource'; public $useTable = 'annot_sources'; public $primaryKey = 'species'; public $displayField = 'common_name'; public $useDbConfig = 'default'; public $id = FALSE; public $data = [...]; public $schemaName = 'db_plaza_public_dicots_05'; public $table = 'annot_sources'; protected $_schema = [...]; public $validate = [...]; public $validationErrors = [...]; public $validationDomain = NULL; public $tablePrefix = ''; public $plugin = NULL; public $alias = 'AnnotSource'; public $tableToModel = [...]; public $cacheQueries = FALSE; public $belongsTo = [...]; public $hasOne = [...]; public $hasMany = [...]; public $hasAndBelongsToMany = [...]; public $actsAs = NULL; public $Behaviors = class BehaviorCollection { ... }; public $whitelist = [...]; public $cacheSources = TRUE; public $findQueryType = NULL; public $recursive = 1; public $order = NULL; public $virtualFields = [...]; protected $_associationKeys = [...]; protected $_associations = [...]; public $__backAssociation = [...]; public $__backInnerAssociation = [...]; public $__backOriginalAssociation = [...]; public $__backContainableAssociation = [...]; public $__safeUpdateMode = FALSE; public $useConsistentAfterFind = TRUE; protected $_insertID = NULL; protected $_sourceConfigured = TRUE; public $findMethods = [...]; protected $_eventManager = class CakeEventManager { ... }; protected $_validator = NULL }; public $Configuration = class Configuration { public $name = 'Configuration'; public $useTable = 'configuration'; public $useDbConfig = 'default'; public $displayField = *uninitialized*; public $id = FALSE; public $data = [...]; public $schemaName = 'db_plaza_public_dicots_05'; public $table = 'configuration'; public $primaryKey = 'id'; protected $_schema = [...]; public $validate = [...]; public $validationErrors = [...]; public $validationDomain = NULL; public $tablePrefix = ''; public $plugin = NULL; public $alias = 'Configuration'; public $tableToModel = [...]; public $cacheQueries = FALSE; public $belongsTo = [...]; public $hasOne = [...]; public $hasMany = [...]; public $hasAndBelongsToMany = [...]; public $actsAs = NULL; public $Behaviors = class BehaviorCollection { ... }; public $whitelist = [...]; public $cacheSources = TRUE; public $findQueryType = NULL; public $recursive = 1; public $order = NULL; public $virtualFields = [...]; protected $_associationKeys = [...]; protected $_associations = [...]; public $__backAssociation = [...]; public $__backInnerAssociation = [...]; public $__backOriginalAssociation = [...]; public $__backContainableAssociation = [...]; public $__safeUpdateMode = FALSE; public $useConsistentAfterFind = TRUE; protected $_insertID = NULL; protected $_sourceConfigured = TRUE; public $findMethods = [...]; protected $_eventManager = class CakeEventManager { ... }; protected $_validator = NULL }; public $Orthologs = class Orthologs { public $name = 'Orthologs'; public $useTable = 'orthologs'; public $useDbConfig = 'default'; public $displayField = *uninitialized*; public $id = FALSE; public $data = [...]; public $schemaName = 'db_plaza_public_dicots_05'; public $table = 'orthologs'; public $primaryKey = 'id'; protected $_schema = [...]; public $validate = [...]; public $validationErrors = [...]; public $validationDomain = NULL; public $tablePrefix = ''; public $plugin = NULL; public $alias = 'Orthologs'; public $tableToModel = [...]; public $cacheQueries = FALSE; public $belongsTo = [...]; public $hasOne = [...]; public $hasMany = [...]; public $hasAndBelongsToMany = [...]; public $actsAs = NULL; public $Behaviors = class BehaviorCollection { ... }; public $whitelist = [...]; public $cacheSources = TRUE; public $findQueryType = NULL; public $recursive = 1; public $order = NULL; public $virtualFields = [...]; protected $_associationKeys = [...]; protected $_associations = [...]; public $__backAssociation = [...]; public $__backInnerAssociation = [...]; public $__backOriginalAssociation = [...]; public $__backContainableAssociation = [...]; public $__safeUpdateMode = FALSE; public $useConsistentAfterFind = TRUE; protected $_insertID = NULL; protected $_sourceConfigured = TRUE; public $findMethods = [...]; protected $_eventManager = class CakeEventManager { ... }; protected $_validator = NULL } }, $request = class CakeRequest { public $params = ['plugin' => NULL, 'controller' => 'orthologs', 'action' => 'explore', 'named' => [...], 'pass' => [...], 'models' => [...]]; public $data = []; public $query = []; public $url = 'orthologs/explore/PSO013G0260/pso'; public $base = '/plaza.dev/_dev_instances/feedback'; public $webroot = '/plaza.dev/_dev_instances/feedback/'; public $here = '/plaza.dev/_dev_instances/feedback/orthologs/explore/PSO013G0260/pso'; protected $_detectors = ['get' => [...], 'patch' => [...], 'post' => [...], 'put' => [...], 'delete' => [...], 'head' => [...], 'options' => [...], 'ssl' => [...], 'ajax' => [...], 'flash' => [...], 'mobile' => [...], 'requested' => [...], 'json' => [...], 'xml' => [...]]; protected $_input = '' } ).../Dispatcher.php:167
40.06253136096Controller->invokeAction( $request = class CakeRequest { public $params = ['plugin' => NULL, 'controller' => 'orthologs', 'action' => 'explore', 'named' => [...], 'pass' => [...], 'models' => [...]]; public $data = []; public $query = []; public $url = 'orthologs/explore/PSO013G0260/pso'; public $base = '/plaza.dev/_dev_instances/feedback'; public $webroot = '/plaza.dev/_dev_instances/feedback/'; public $here = '/plaza.dev/_dev_instances/feedback/orthologs/explore/PSO013G0260/pso'; protected $_detectors = ['get' => [...], 'patch' => [...], 'post' => [...], 'put' => [...], 'delete' => [...], 'head' => [...], 'options' => [...], 'ssl' => [...], 'ajax' => [...], 'flash' => [...], 'mobile' => [...], 'requested' => [...], 'json' => [...], 'xml' => [...]]; protected $_input = '' } ).../Dispatcher.php:193
50.06253136208invokeArgs( $object = class OrthologsController { public $name = 'Orthologs'; public $helpers = ['Session' => NULL, 'Html' => NULL, 'Form' => NULL, 'Cache' => NULL]; public $uses = [0 => 'Annotation', 1 => 'AnnotSource', 2 => 'Configuration', 3 => 'DnaMotifsCns', 4 => 'GfDatum', 5 => 'Msa', 6 => 'Orthologs', 7 => 'Similarities', 8 => 'Trees', 9 => 'AdExperiments', 10 => 'FunctionalClustersExperiments']; public $components = ['Session' => NULL, 'DataUtils' => NULL, 'FunctionalAnnotationUtils' => NULL, 'GeneFamilies' => NULL, 'Organism' => NULL, 'WorkbenchUtils' => NULL, 'Orthology' => NULL]; public $request = class CakeRequest { public $params = [...]; public $data = [...]; public $query = [...]; public $url = 'orthologs/explore/PSO013G0260/pso'; public $base = '/plaza.dev/_dev_instances/feedback'; public $webroot = '/plaza.dev/_dev_instances/feedback/'; public $here = '/plaza.dev/_dev_instances/feedback/orthologs/explore/PSO013G0260/pso'; protected $_detectors = [...]; protected $_input = '' }; public $response = class CakeResponse { protected $_statusCodes = [...]; protected $_mimeTypes = [...]; protected $_protocol = 'HTTP/1.1'; protected $_status = 200; protected $_contentType = 'text/html'; protected $_headers = [...]; protected $_body = NULL; protected $_file = NULL; protected $_fileRange = NULL; protected $_charset = 'UTF-8'; protected $_cacheDirectives = [...]; protected $_cookies = [...] }; protected $_responseClass = 'CakeResponse'; public $viewPath = 'Orthologs'; public $layoutPath = NULL; public $viewVars = ['num_paralogs' => 783, 'supporting_types' => [...], 'ortholog_types' => [...], 'all_organisms' => [...], 'target_species' => 'pso', 'query_species' => 'pso', 'query_gene' => 'PSO013G0260', 'title_for_layout' => 'Dicots PLAZA 5.0 : Integrative Orthology']; public $view = 'explore'; public $layout = 'default'; public $autoRender = TRUE; public $autoLayout = TRUE; public $Components = class ComponentCollection { protected $_Controller = ...; protected $_enabled = [...]; protected $_loaded = [...]; public $defaultPriority = 10 }; public $viewClass = 'View'; public $View = NULL; public $ext = '.ctp'; public $plugin = NULL; public $cacheAction = FALSE; public $passedArgs = [0 => 'PSO013G0260', 1 => 'pso']; public $scaffold = FALSE; public $methods = [1 => 'overview', 2 => 'explore', 3 => 'get_orthologs_type_data', 4 => 'get_supporting_data', 5 => 'get_supporting_type_data', 6 => 'get_orthologs_data']; public $modelClass = 'Annotation'; public $modelKey = 'ortholog'; public $validationErrors = NULL; protected $_mergeParent = 'AppController'; protected $_eventManager = class CakeEventManager { protected $_listeners = [...]; protected $_isGlobal = FALSE }; public $Session = class SessionComponent { protected $_Collection = class ComponentCollection { ... }; public $settings = [...]; public $components = [...]; protected $_componentMap = [...] }; public $DataUtils = class DataUtilsComponent { public $name = 'DataUtils'; public $controller = ...; public $components = [...]; protected $_Collection = class ComponentCollection { ... }; public $settings = [...]; protected $_componentMap = [...] }; public $FunctionalAnnotationUtils = class FunctionalAnnotationUtilsComponent { public $name = 'FunctionalAnnotationUtils'; public $controller = ...; public $components = [...]; protected $_Collection = class ComponentCollection { ... }; public $settings = [...]; protected $_componentMap = [...] }; public $GeneFamilies = class GeneFamiliesComponent { public $name = 'GeneFamilies'; private $controller = ...; protected $_Collection = class ComponentCollection { ... }; public $settings = [...]; public $components = [...]; protected $_componentMap = [...] }; public $Organism = class OrganismComponent { public $name = 'Organism'; private $controller = ...; public $components = [...]; protected $_Collection = class ComponentCollection { ... }; public $settings = [...]; protected $_componentMap = [...] }; public $WorkbenchUtils = class WorkbenchUtilsComponent { public $name = 'WorkbenchUtils'; private $controller = ...; public $components = [...]; protected $_Collection = class ComponentCollection { ... }; public $settings = [...]; protected $_componentMap = [...] }; public $Orthology = class OrthologyComponent { public $name = 'Orthology'; private $controller = ...; protected $_Collection = class ComponentCollection { ... }; public $settings = [...]; public $components = [...]; protected $_componentMap = [...] }; public $Annotation = class Annotation { public $name = 'Annotation'; public $useTable = 'annotation'; public $primaryKey = 'gene_id'; public $cacheQueries = FALSE; public $cacheSources = FALSE; public $belongsTo = [...]; public $hasMany = [...]; public $useDbConfig = 'default'; public $displayField = *uninitialized*; public $id = FALSE; public $data = [...]; public $schemaName = 'db_plaza_public_dicots_05'; public $table = 'annotation'; protected $_schema = [...]; public $validate = [...]; public $validationErrors = [...]; public $validationDomain = NULL; public $tablePrefix = ''; public $plugin = NULL; public $alias = 'Annotation'; public $tableToModel = [...]; public $hasOne = [...]; public $hasAndBelongsToMany = [...]; public $actsAs = NULL; public $Behaviors = class BehaviorCollection { ... }; public $whitelist = [...]; public $findQueryType = NULL; public $recursive = 1; public $order = NULL; public $virtualFields = [...]; protected $_associationKeys = [...]; protected $_associations = [...]; public $__backAssociation = [...]; public $__backInnerAssociation = [...]; public $__backOriginalAssociation = [...]; public $__backContainableAssociation = [...]; public $__safeUpdateMode = FALSE; public $useConsistentAfterFind = TRUE; protected $_insertID = NULL; protected $_sourceConfigured = TRUE; public $findMethods = [...]; protected $_eventManager = class CakeEventManager { ... }; protected $_validator = NULL }; public $AnnotSource = class AnnotSource { public $name = 'AnnotSource'; public $useTable = 'annot_sources'; public $primaryKey = 'species'; public $displayField = 'common_name'; public $useDbConfig = 'default'; public $id = FALSE; public $data = [...]; public $schemaName = 'db_plaza_public_dicots_05'; public $table = 'annot_sources'; protected $_schema = [...]; public $validate = [...]; public $validationErrors = [...]; public $validationDomain = NULL; public $tablePrefix = ''; public $plugin = NULL; public $alias = 'AnnotSource'; public $tableToModel = [...]; public $cacheQueries = FALSE; public $belongsTo = [...]; public $hasOne = [...]; public $hasMany = [...]; public $hasAndBelongsToMany = [...]; public $actsAs = NULL; public $Behaviors = class BehaviorCollection { ... }; public $whitelist = [...]; public $cacheSources = TRUE; public $findQueryType = NULL; public $recursive = 1; public $order = NULL; public $virtualFields = [...]; protected $_associationKeys = [...]; protected $_associations = [...]; public $__backAssociation = [...]; public $__backInnerAssociation = [...]; public $__backOriginalAssociation = [...]; public $__backContainableAssociation = [...]; public $__safeUpdateMode = FALSE; public $useConsistentAfterFind = TRUE; protected $_insertID = NULL; protected $_sourceConfigured = TRUE; public $findMethods = [...]; protected $_eventManager = class CakeEventManager { ... }; protected $_validator = NULL }; public $Configuration = class Configuration { public $name = 'Configuration'; public $useTable = 'configuration'; public $useDbConfig = 'default'; public $displayField = *uninitialized*; public $id = FALSE; public $data = [...]; public $schemaName = 'db_plaza_public_dicots_05'; public $table = 'configuration'; public $primaryKey = 'id'; protected $_schema = [...]; public $validate = [...]; public $validationErrors = [...]; public $validationDomain = NULL; public $tablePrefix = ''; public $plugin = NULL; public $alias = 'Configuration'; public $tableToModel = [...]; public $cacheQueries = FALSE; public $belongsTo = [...]; public $hasOne = [...]; public $hasMany = [...]; public $hasAndBelongsToMany = [...]; public $actsAs = NULL; public $Behaviors = class BehaviorCollection { ... }; public $whitelist = [...]; public $cacheSources = TRUE; public $findQueryType = NULL; public $recursive = 1; public $order = NULL; public $virtualFields = [...]; protected $_associationKeys = [...]; protected $_associations = [...]; public $__backAssociation = [...]; public $__backInnerAssociation = [...]; public $__backOriginalAssociation = [...]; public $__backContainableAssociation = [...]; public $__safeUpdateMode = FALSE; public $useConsistentAfterFind = TRUE; protected $_insertID = NULL; protected $_sourceConfigured = TRUE; public $findMethods = [...]; protected $_eventManager = class CakeEventManager { ... }; protected $_validator = NULL }; public $Orthologs = class Orthologs { public $name = 'Orthologs'; public $useTable = 'orthologs'; public $useDbConfig = 'default'; public $displayField = *uninitialized*; public $id = FALSE; public $data = [...]; public $schemaName = 'db_plaza_public_dicots_05'; public $table = 'orthologs'; public $primaryKey = 'id'; protected $_schema = [...]; public $validate = [...]; public $validationErrors = [...]; public $validationDomain = NULL; public $tablePrefix = ''; public $plugin = NULL; public $alias = 'Orthologs'; public $tableToModel = [...]; public $cacheQueries = FALSE; public $belongsTo = [...]; public $hasOne = [...]; public $hasMany = [...]; public $hasAndBelongsToMany = [...]; public $actsAs = NULL; public $Behaviors = class BehaviorCollection { ... }; public $whitelist = [...]; public $cacheSources = TRUE; public $findQueryType = NULL; public $recursive = 1; public $order = NULL; public $virtualFields = [...]; protected $_associationKeys = [...]; protected $_associations = [...]; public $__backAssociation = [...]; public $__backInnerAssociation = [...]; public $__backOriginalAssociation = [...]; public $__backContainableAssociation = [...]; public $__safeUpdateMode = FALSE; public $useConsistentAfterFind = TRUE; protected $_insertID = NULL; protected $_sourceConfigured = TRUE; public $findMethods = [...]; protected $_eventManager = class CakeEventManager { ... }; protected $_validator = NULL } }, $args = [0 => 'PSO013G0260', 1 => 'pso'] ).../Controller.php:491
60.06253136304OrthologsController->explore( $query_gene = 'PSO013G0260', $target_species = 'pso' ).../Controller.php:491
71.882365433176Hash::extract( $data = ['PSO013G0031' => ['ORTHO' => [...], 'BHIF' => [...]], 'PSO013G0260' => ['ORTHO' => [...], 'BHIF' => [...]], 'PSO017G0047' => ['ORTHO' => [...], 'BHIF' => [...]], 'PSO017G0212' => ['ORTHO' => [...], 'BHIF' => [...]], 'PSO017G0228' => ['ORTHO' => [...], 'BHIF' => [...]], 'PSO017G0303' => ['ORTHO' => [...], 'BHIF' => [...]], 'PSO017G0510' => ['ORTHO' => [...], 'BHIF' => [...]], 'PSO017G0520' => ['ORTHO' => [...], 'BHIF' => [...]], 'PSO017G0808' => ['ORTHO' => [...], 'BHIF' => [...]], 'PSO017G0857' => ['ORTHO' => [...], 'BHIF' => [...]], 'PSO017G0957' => ['ORTHO' => [...], 'BHIF' => [...]], 'PSO017G0976' => ['ORTHO' => [...], 'BHIF' => [...]], 'PSO017G1187' => ['ORTHO' => [...], 'BHIF' => [...]], 'PSO017G1242' => ['ORTHO' => [...], 'BHIF' => [...]], 'PSO017G1333' => ['ORTHO' => [...], 'BHIF' => [...]], 'PSO017G1369' => ['ORTHO' => [...], 'BHIF' => [...]], 'PSO017G1390' => ['ORTHO' => [...], 'BHIF' => [...]], 'PSO017G1395' => ['ORTHO' => [...], 'BHIF' => [...]], 'PSO017G1470' => ['ORTHO' => [...], 'BHIF' => [...]], 'PSO017G1471' => ['ORTHO' => [...], 'BHIF' => [...]], 'PSO017G1489' => ['ORTHO' => [...], 'BHIF' => [...]], 'PSO017G1834' => ['ORTHO' => [...], 'BHIF' => [...]], 'PSO017G1919' => ['ORTHO' => [...], 'BHIF' => [...], 'anchor_point' => [...]], 'PSO017G2182' => ['ORTHO' => [...], 'BHIF' => [...]], 'PSO017G2214' => ['ORTHO' => [...], 'BHIF' => [...]], 'PSO017G2217' => ['ORTHO' => [...], 'BHIF' => [...]], 'PSO017G2373' => ['ORTHO' => [...], 'BHIF' => [...]], 'PSO017G2506' => ['ORTHO' => [...], 'BHIF' => [...]], 'PSO017G2760' => ['ORTHO' => [...], 'BHIF' => [...], 'anchor_point' => [...]], 'PSO017G2762' => ['ORTHO' => [...], 'BHIF' => [...]], 'PSO017G2921' => ['ORTHO' => [...], 'BHIF' => [...]], 'PSO017G2972' => ['ORTHO' => [...], 'BHIF' => [...], 'anchor_point' => [...]], 'PSO017G3046' => ['ORTHO' => [...], 'BHIF' => [...]], 'PSO017G3061' => ['ORTHO' => [...], 'BHIF' => [...]], 'PSO017G3220' => ['ORTHO' => [...], 'BHIF' => [...]], 'PSO017G3235' => ['ORTHO' => [...], 'BHIF' => [...], 'anchor_point' => [...]], 'PSO017G3287' => ['ORTHO' => [...], 'BHIF' => [...], 'anchor_point' => [...]], 'PSO017G3530' => ['ORTHO' => [...], 'BHIF' => [...], 'anchor_point' => [...]], 'PSO017G3535' => ['ORTHO' => [...], 'BHIF' => [...]], 'PSO017G3568' => ['ORTHO' => [...], 'BHIF' => [...]], 'PSO017G3760' => ['ORTHO' => [...], 'BHIF' => [...]], 'PSO017G3976' => ['ORTHO' => [...], 'BHIF' => [...]], 'PSO017G4088' => ['ORTHO' => [...], 'BHIF' => [...]], 'PSO017G4383' => ['ORTHO' => [...], 'BHIF' => [...]], 'PSO017G4411' => ['ORTHO' => [...], 'BHIF' => [...]], 'PSO017G4428' => ['ORTHO' => [...], 'BHIF' => [...]], 'PSO017G4441' => ['ORTHO' => [...], 'BHIF' => [...]], 'PSO017G4467' => ['ORTHO' => [...], 'BHIF' => [...]], 'PSO017G4696' => ['ORTHO' => [...], 'BHIF' => [...]], 'PSO017G4995' => ['ORTHO' => [...], 'BHIF' => [...]], 'PSO017G5080' => ['ORTHO' => [...], 'BHIF' => [...]], 'PSO017G5091' => ['ORTHO' => [...], 'BHIF' => [...]], 'PSO017G5145' => ['ORTHO' => [...], 'BHIF' => [...]], 'PSO017G5264' => ['ORTHO' => [...], 'BHIF' => [...]], 'PSO017G5476' => ['ORTHO' => [...], 'BHIF' => [...], 'anchor_point' => [...]], 'PSO017G5492' => ['ORTHO' => [...], 'BHIF' => [...]], 'PSO017G5681' => ['ORTHO' => [...], 'BHIF' => [...]], 'PSO017G6159' => ['ORTHO' => [...], 'BHIF' => [...]], 'PSO017G6280' => ['ORTHO' => [...], 'BHIF' => [...]], 'PSO017G6330' => ['ORTHO' => [...], 'BHIF' => [...], 'anchor_point' => [...]], 'PSO017G6357' => ['ORTHO' => [...], 'BHIF' => [...]], 'PSO017G6616' => ['ORTHO' => [...], 'BHIF' => [...]], 'PSO017G6798' => ['ORTHO' => [...], 'BHIF' => [...]], 'PSO017G6835' => ['ORTHO' => [...], 'BHIF' => [...]], 'PSO017G6960' => ['ORTHO' => [...], 'BHIF' => [...]], 'PSO017G7127' => ['ORTHO' => [...], 'BHIF' => [...]], 'PSO017G7364' => ['ORTHO' => [...], 'BHIF' => [...]], 'PSO040G0023' => ['ORTHO' => [...], 'BHIF' => [...]], 'PSO061G0001' => ['ORTHO' => [...], 'BHIF' => [...]], 'PSO063G0039' => ['ORTHO' => [...], 'BHIF' => [...]], 'PSO063G0103' => ['ORTHO' => [...], 'BHIF' => [...], 'anchor_point' => [...]], 'PSO063G0335' => ['ORTHO' => [...], 'BHIF' => [...], 'anchor_point' => [...]], 'PSO063G0448' => ['ORTHO' => [...], 'BHIF' => [...]], 'PSO063G0558' => ['ORTHO' => [...], 'BHIF' => [...]], 'PSO063G0729' => ['ORTHO' => [...], 'BHIF' => [...]], 'PSO063G0763' => ['ORTHO' => [...], 'BHIF' => [...]], 'PSO063G0768' => ['ORTHO' => [...], 'BHIF' => [...]], 'PSO063G0844' => ['ORTHO' => [...], 'BHIF' => [...], 'anchor_point' => [...]], 'PSO063G0862' => ['ORTHO' => [...], 'BHIF' => [...]], 'PSO063G0891' => ['ORTHO' => [...], 'BHIF' => [...]], 'PSO063G1041' => ['ORTHO' => [...], 'BHIF' => [...]], 'PSO063G1176' => ['ORTHO' => [...], 'BHIF' => [...], 'anchor_point' => [...]], 'PSO063G1199' => ['ORTHO' => [...], 'BHIF' => [...]], 'PSO063G1212' => ['ORTHO' => [...], 'BHIF' => [...]], 'PSO063G1566' => ['ORTHO' => [...], 'BHIF' => [...], 'anchor_point' => [...]], 'PSO063G1595' => ['ORTHO' => [...], 'BHIF' => [...]], 'PSO063G1748' => ['ORTHO' => [...], 'BHIF' => [...]], 'PSO063G1906' => ['ORTHO' => [...], 'BHIF' => [...]], 'PSO063G2021' => ['ORTHO' => [...], 'BHIF' => [...], 'anchor_point' => [...]], 'PSO063G2037' => ['ORTHO' => [...], 'BHIF' => [...]], 'PSO063G2062' => ['ORTHO' => [...], 'BHIF' => [...]], 'PSO063G2233' => ['ORTHO' => [...], 'BHIF' => [...]], 'PSO063G2385' => ['ORTHO' => [...], 'BHIF' => [...]], 'PSO063G2458' => ['ORTHO' => [...], 'BHIF' => [...]], 'PSO063G2629' => ['ORTHO' => [...], 'BHIF' => [...]], 'PSO063G2685' => ['ORTHO' => [...], 'BHIF' => [...]], 'PSO063G2690' => ['ORTHO' => [...], 'BHIF' => [...]], 'PSO063G2714' => ['ORTHO' => [...], 'BHIF' => [...]], 'PSO063G2825' => ['ORTHO' => [...], 'BHIF' => [...], 'anchor_point' => [...]], 'PSO063G2977' => ['ORTHO' => [...], 'BHIF' => [...]], 'PSO063G3131' => ['ORTHO' => [...], 'BHIF' => [...]], 'PSO063G3214' => ['ORTHO' => [...], 'BHIF' => [...], 'anchor_point' => [...]], 'PSO063G3357' => ['ORTHO' => [...], 'BHIF' => [...]], 'PSO063G3360' => ['ORTHO' => [...], 'BHIF' => [...]], 'PSO063G3371' => ['ORTHO' => [...], 'BHIF' => [...]], 'PSO063G3467' => ['ORTHO' => [...], 'BHIF' => [...]], 'PSO063G3571' => ['ORTHO' => [...], 'BHIF' => [...]], 'PSO063G3576' => ['ORTHO' => [...], 'BHIF' => [...]], 'PSO063G3609' => ['ORTHO' => [...], 'BHIF' => [...]], 'PSO063G3623' => ['ORTHO' => [...], 'BHIF' => [...]], 'PSO063G3697' => ['ORTHO' => [...], 'BHIF' => [...]], 'PSO063G3784' => ['ORTHO' => [...], 'BHIF' => [...]], 'PSO063G3795' => ['ORTHO' => [...], 'BHIF' => [...]], 'PSO063G4266' => ['ORTHO' => [...], 'BHIF' => [...]], 'PSO063G4287' => ['ORTHO' => [...], 'BHIF' => [...]], 'PSO063G4319' => ['ORTHO' => [...], 'BHIF' => [...], 'anchor_point' => [...]], 'PSO063G4338' => ['ORTHO' => [...], 'BHIF' => [...]], 'PSO063G4608' => ['ORTHO' => [...], 'BHIF' => [...]], 'PSO063G4661' => ['ORTHO' => [...], 'BHIF' => [...]], 'PSO063G4674' => ['ORTHO' => [...], 'BHIF' => [...]], 'PSO063G4677' => ['ORTHO' => [...], 'BHIF' => [...]], 'PSO063G4704' => ['ORTHO' => [...], 'BHIF' => [...]], 'PSO063G5061' => ['ORTHO' => [...], 'BHIF' => [...]], 'PSO063G5130' => ['ORTHO' => [...], 'BHIF' => [...]], 'PSO063G5132' => ['ORTHO' => [...], 'BHIF' => [...]], 'PSO063G5302' => ['ORTHO' => [...], 'BHIF' => [...], 'anchor_point' => [...]], 'PSO063G5487' => ['ORTHO' => [...], 'BHIF' => [...]], 'PSO063G5564' => ['ORTHO' => [...], 'BHIF' => [...]], ...], $path = '{s}.{s}.{n}' ).../OrthologsController.php:135
82.103269765448App::shutdown( ).../App.php:0
92.103369765480App::_checkFatalError( ).../App.php:943
102.103369766208ErrorHandler::handleError( $code = 1, $description = 'Allowed memory size of 402653184 bytes exhausted (tried to allocate 8388616 bytes)', $file = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/lib/Cake/Utility/Hash.php', $line = 132, $context = [] ).../App.php:970
112.103369766208ErrorHandler::handleFatalError( $code = 1, $description = 'Allowed memory size of 402653184 bytes exhausted (tried to allocate 8388616 bytes)', $file = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/lib/Cake/Utility/Hash.php', $line = 132 ).../ErrorHandler.php:212
122.105569715280ErrorHandler::handleException( $exception = class FatalErrorException { protected $_attributes = []; protected $_messageTemplate = ''; protected $_responseHeaders = NULL; protected $message = 'Allowed memory size of 402653184 bytes exhausted (tried to allocate 8388616 bytes)'; private ${Exception}string = ''; protected $code = 500; protected $file = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/lib/Cake/Utility/Hash.php'; protected $line = 132; private ${Exception}trace = [0 => [...], 1 => [...], 2 => [...], 3 => [...]]; private ${Exception}previous = NULL } ).../ErrorHandler.php:269
132.111769790216ExceptionRenderer->render( ).../ErrorHandler.php:127
142.111769790216ExceptionRenderer->_cakeError( $error = class FatalErrorException { protected $_attributes = []; protected $_messageTemplate = ''; protected $_responseHeaders = NULL; protected $message = 'Allowed memory size of 402653184 bytes exhausted (tried to allocate 8388616 bytes)'; private ${Exception}string = ''; protected $code = 500; protected $file = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/lib/Cake/Utility/Hash.php'; protected $line = 132; private ${Exception}trace = [0 => [...], 1 => [...], 2 => [...], 3 => [...]]; private ${Exception}previous = NULL } ).../ExceptionRenderer.php:190
152.111869791200ExceptionRenderer->_outputMessage( $template = 'fatalError' ).../ExceptionRenderer.php:213
162.111869791200Controller->render( $view = 'fatalError', $layout = ??? ).../ExceptionRenderer.php:292
172.169870858832View->render( $view = 'fatalError', $layout = NULL ).../Controller.php:963
182.169970868984View->_render( $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/lib/Cake/View/Errors/fatal_error.ctp', $data = ??? ).../View.php:473
192.169970869928View->_evaluate( $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/lib/Cake/View/Errors/fatal_error.ctp', $dataForView = ['navigation_bar_info' => ['num_colinearity_runs' => 1, 'num_colinearity_with_dating_runs' => 0, 'num_functional_clusters_runs' => 6, 'has_pan_genomes' => FALSE], 'code' => 500, 'name' => 'Allowed memory size of 402653184 bytes exhausted (tried to allocate 8388616 bytes)', 'message' => 'Allowed memory size of 402653184 bytes exhausted (tried to allocate 8388616 bytes)', 'url' => '/plaza.dev/_dev_instances/feedback/orthologs/explore/PSO013G0260/pso', 'error' => class FatalErrorException { protected $_attributes = [...]; protected $_messageTemplate = ''; protected $_responseHeaders = NULL; protected $message = 'Allowed memory size of 402653184 bytes exhausted (tried to allocate 8388616 bytes)'; private ${Exception}string = ''; protected $code = 500; protected $file = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/lib/Cake/Utility/Hash.php'; protected $line = 132; private ${Exception}trace = [...]; private ${Exception}previous = NULL }, '_serialize' => [0 => 'code', 1 => 'name', 2 => 'message', 3 => 'url']] ).../View.php:933
202.178270891672include( '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/lib/Cake/View/Errors/fatal_error.ctp ).../View.php:971
212.185871247368xdebug_print_function_stack( ).../fatal_error.ctp:37