Fatal Error

Error: Allowed memory size of 402653184 bytes exhausted (tried to allocate 41943040 bytes)
File: /www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/Controller/OrthologsController.php
Line: 135

Notice: If you want to customize this error message, create app/View/Errors/fatal_error.ctp

( ! ) Xdebug: user triggered in /www/bioinformatics01_ro/plaza/_dev_instances/feedback/lib/Cake/View/Errors/fatal_error.ctp on line 37
Call Stack
#	Time	Memory	Function	Location
1	0.0012	434656	{main}( )	.../index.php:0
2	0.0366	1903872	Dispatcher->dispatch( $request = class CakeRequest { public $params = ['plugin' => NULL, 'controller' => 'orthologs', 'action' => 'explore', 'named' => [...], 'pass' => [...], 'models' => [...]]; public $data = []; public $query = []; public $url = 'orthologs/explore/Nitab4.5_0002611g0080/mbi'; public $base = '/plaza.dev/_dev_instances/feedback'; public $webroot = '/plaza.dev/_dev_instances/feedback/'; public $here = '/plaza.dev/_dev_instances/feedback/orthologs/explore/Nitab4.5_0002611g0080/mbi'; protected $_detectors = ['get' => [...], 'patch' => [...], 'post' => [...], 'put' => [...], 'delete' => [...], 'head' => [...], 'options' => [...], 'ssl' => [...], 'ajax' => [...], 'flash' => [...], 'mobile' => [...], 'requested' => [...], 'json' => [...], 'xml' => [...]]; protected $_input = '' }, $response = class CakeResponse { protected $_statusCodes = [100 => 'Continue', 101 => 'Switching Protocols', 200 => 'OK', 201 => 'Created', 202 => 'Accepted', 203 => 'Non-Authoritative Information', 204 => 'No Content', 205 => 'Reset Content', 206 => 'Partial Content', 300 => 'Multiple Choices', 301 => 'Moved Permanently', 302 => 'Found', 303 => 'See Other', 304 => 'Not Modified', 305 => 'Use Proxy', 307 => 'Temporary Redirect', 400 => 'Bad Request', 401 => 'Unauthorized', 402 => 'Payment Required', 403 => 'Forbidden', 404 => 'Not Found', 405 => 'Method Not Allowed', 406 => 'Not Acceptable', 407 => 'Proxy Authentication Required', 408 => 'Request Time-out', 409 => 'Conflict', 410 => 'Gone', 411 => 'Length Required', 412 => 'Precondition Failed', 413 => 'Request Entity Too Large', 414 => 'Request-URI Too Large', 415 => 'Unsupported Media Type', 416 => 'Requested range not satisfiable', 417 => 'Expectation Failed', 429 => 'Too Many Requests', 500 => 'Internal Server Error', 501 => 'Not Implemented', 502 => 'Bad Gateway', 503 => 'Service Unavailable', 504 => 'Gateway Time-out', 505 => 'Unsupported Version']; protected $_mimeTypes = ['html' => [...], 'json' => 'application/json', 'xml' => [...], 'rss' => 'application/rss+xml', 'ai' => 'application/postscript', 'bcpio' => 'application/x-bcpio', 'bin' => 'application/octet-stream', 'ccad' => 'application/clariscad', 'cdf' => 'application/x-netcdf', 'class' => 'application/octet-stream', 'cpio' => 'application/x-cpio', 'cpt' => 'application/mac-compactpro', 'csh' => 'application/x-csh', 'csv' => [...], 'dcr' => 'application/x-director', 'dir' => 'application/x-director', 'dms' => 'application/octet-stream', 'doc' => 'application/msword', 'docx' => 'application/vnd.openxmlformats-officedocument.wordprocessingml.document', 'drw' => 'application/drafting', 'dvi' => 'application/x-dvi', 'dwg' => 'application/acad', 'dxf' => 'application/dxf', 'dxr' => 'application/x-director', 'eot' => 'application/vnd.ms-fontobject', 'eps' => 'application/postscript', 'exe' => 'application/octet-stream', 'ez' => 'application/andrew-inset', 'flv' => 'video/x-flv', 'gtar' => 'application/x-gtar', 'gz' => 'application/x-gzip', 'bz2' => 'application/x-bzip', '7z' => 'application/x-7z-compressed', 'hdf' => 'application/x-hdf', 'hqx' => 'application/mac-binhex40', 'ico' => 'image/x-icon', 'ips' => 'application/x-ipscript', 'ipx' => 'application/x-ipix', 'js' => 'application/javascript', 'jsonapi' => 'application/vnd.api+json', 'latex' => 'application/x-latex', 'lha' => 'application/octet-stream', 'lsp' => 'application/x-lisp', 'lzh' => 'application/octet-stream', 'man' => 'application/x-troff-man', 'me' => 'application/x-troff-me', 'mif' => 'application/vnd.mif', 'ms' => 'application/x-troff-ms', 'nc' => 'application/x-netcdf', 'oda' => 'application/oda', 'otf' => 'font/otf', 'pdf' => 'application/pdf', 'pgn' => 'application/x-chess-pgn', 'pot' => 'application/vnd.ms-powerpoint', 'pps' => 'application/vnd.ms-powerpoint', 'ppt' => 'application/vnd.ms-powerpoint', 'pptx' => 'application/vnd.openxmlformats-officedocument.presentationml.presentation', 'ppz' => 'application/vnd.ms-powerpoint', 'pre' => 'application/x-freelance', 'prt' => 'application/pro_eng', 'ps' => 'application/postscript', 'roff' => 'application/x-troff', 'scm' => 'application/x-lotusscreencam', 'set' => 'application/set', 'sh' => 'application/x-sh', 'shar' => 'application/x-shar', 'sit' => 'application/x-stuffit', 'skd' => 'application/x-koan', 'skm' => 'application/x-koan', 'skp' => 'application/x-koan', 'skt' => 'application/x-koan', 'smi' => 'application/smil', 'smil' => 'application/smil', 'sol' => 'application/solids', 'spl' => 'application/x-futuresplash', 'src' => 'application/x-wais-source', 'step' => 'application/STEP', 'stl' => 'application/SLA', 'stp' => 'application/STEP', 'sv4cpio' => 'application/x-sv4cpio', 'sv4crc' => 'application/x-sv4crc', 'svg' => 'image/svg+xml', 'svgz' => 'image/svg+xml', 'swf' => 'application/x-shockwave-flash', 't' => 'application/x-troff', 'tar' => 'application/x-tar', 'tcl' => 'application/x-tcl', 'tex' => 'application/x-tex', 'texi' => 'application/x-texinfo', 'texinfo' => 'application/x-texinfo', 'tr' => 'application/x-troff', 'tsp' => 'application/dsptype', 'ttc' => 'font/ttf', 'ttf' => 'font/ttf', 'unv' => 'application/i-deas', 'ustar' => 'application/x-ustar', 'vcd' => 'application/x-cdlink', 'vda' => 'application/vda', 'xlc' => 'application/vnd.ms-excel', 'xll' => 'application/vnd.ms-excel', 'xlm' => 'application/vnd.ms-excel', 'xls' => 'application/vnd.ms-excel', 'xlsx' => 'application/vnd.openxmlformats-officedocument.spreadsheetml.sheet', 'xlw' => 'application/vnd.ms-excel', 'zip' => 'application/zip', 'aif' => 'audio/x-aiff', 'aifc' => 'audio/x-aiff', 'aiff' => 'audio/x-aiff', 'au' => 'audio/basic', 'kar' => 'audio/midi', 'mid' => 'audio/midi', 'midi' => 'audio/midi', 'mp2' => 'audio/mpeg', 'mp3' => 'audio/mpeg', 'mpga' => 'audio/mpeg', 'ogg' => 'audio/ogg', 'oga' => 'audio/ogg', 'spx' => 'audio/ogg', 'ra' => 'audio/x-realaudio', 'ram' => 'audio/x-pn-realaudio', 'rm' => 'audio/x-pn-realaudio', 'rpm' => 'audio/x-pn-realaudio-plugin', 'snd' => 'audio/basic', 'tsi' => 'audio/TSP-audio', 'wav' => 'audio/x-wav', 'aac' => 'audio/aac', 'asc' => 'text/plain', 'c' => 'text/plain', ...]; protected $_protocol = 'HTTP/1.1'; protected $_status = 200; protected $_contentType = 'text/html'; protected $_headers = []; protected $_body = NULL; protected $_file = NULL; protected $_fileRange = NULL; protected $_charset = 'UTF-8'; protected $_cacheDirectives = []; protected $_cookies = [] }, $additionalParams = ??? )	.../index.php:151
3	0.0587	2712384	Dispatcher->_invoke( $controller = class OrthologsController { public $name = 'Orthologs'; public $helpers = ['Session' => NULL, 'Html' => NULL, 'Form' => NULL, 'Cache' => NULL]; public $uses = [0 => 'Annotation', 1 => 'AnnotSource', 2 => 'Configuration', 3 => 'DnaMotifsCns', 4 => 'GfDatum', 5 => 'Msa', 6 => 'Orthologs', 7 => 'Similarities', 8 => 'Trees', 9 => 'AdExperiments', 10 => 'FunctionalClustersExperiments']; public $components = ['Session' => NULL, 'DataUtils' => NULL, 'FunctionalAnnotationUtils' => NULL, 'GeneFamilies' => NULL, 'Organism' => NULL, 'WorkbenchUtils' => NULL, 'Orthology' => NULL]; public $request = class CakeRequest { public $params = [...]; public $data = [...]; public $query = [...]; public $url = 'orthologs/explore/Nitab4.5_0002611g0080/mbi'; public $base = '/plaza.dev/_dev_instances/feedback'; public $webroot = '/plaza.dev/_dev_instances/feedback/'; public $here = '/plaza.dev/_dev_instances/feedback/orthologs/explore/Nitab4.5_0002611g0080/mbi'; protected $_detectors = [...]; protected $_input = '' }; public $response = class CakeResponse { protected $_statusCodes = [...]; protected $_mimeTypes = [...]; protected $_protocol = 'HTTP/1.1'; protected $_status = 200; protected $_contentType = 'text/html'; protected $_headers = [...]; protected $_body = NULL; protected $_file = NULL; protected $_fileRange = NULL; protected $_charset = 'UTF-8'; protected $_cacheDirectives = [...]; protected $_cookies = [...] }; protected $_responseClass = 'CakeResponse'; public $viewPath = 'Orthologs'; public $layoutPath = NULL; public $viewVars = ['num_paralogs' => 413, 'supporting_types' => [...], 'ortholog_types' => [...], 'all_organisms' => [...], 'target_species' => 'mbi', 'query_species' => 'nta', 'query_gene' => 'Nitab4.5_0002611g0080', 'title_for_layout' => 'Dicots PLAZA 5.0 : Integrative Orthology']; public $view = 'explore'; public $layout = 'default'; public $autoRender = TRUE; public $autoLayout = TRUE; public $Components = class ComponentCollection { protected $_Controller = ...; protected $_enabled = [...]; protected $_loaded = [...]; public $defaultPriority = 10 }; public $viewClass = 'View'; public $View = NULL; public $ext = '.ctp'; public $plugin = NULL; public $cacheAction = FALSE; public $passedArgs = [0 => 'Nitab4.5_0002611g0080', 1 => 'mbi']; public $scaffold = FALSE; public $methods = [1 => 'overview', 2 => 'explore', 3 => 'get_orthologs_type_data', 4 => 'get_supporting_data', 5 => 'get_supporting_type_data', 6 => 'get_orthologs_data']; public $modelClass = 'Annotation'; public $modelKey = 'ortholog'; public $validationErrors = NULL; protected $_mergeParent = 'AppController'; protected $_eventManager = class CakeEventManager { protected $_listeners = [...]; protected $_isGlobal = FALSE }; public $Session = class SessionComponent { protected $_Collection = class ComponentCollection { ... }; public $settings = [...]; public $components = [...]; protected $_componentMap = [...] }; public $DataUtils = class DataUtilsComponent { public $name = 'DataUtils'; public $controller = ...; public $components = [...]; protected $_Collection = class ComponentCollection { ... }; public $settings = [...]; protected $_componentMap = [...] }; public $FunctionalAnnotationUtils = class FunctionalAnnotationUtilsComponent { public $name = 'FunctionalAnnotationUtils'; public $controller = ...; public $components = [...]; protected $_Collection = class ComponentCollection { ... }; public $settings = [...]; protected $_componentMap = [...] }; public $GeneFamilies = class GeneFamiliesComponent { public $name = 'GeneFamilies'; private $controller = ...; protected $_Collection = class ComponentCollection { ... }; public $settings = [...]; public $components = [...]; protected $_componentMap = [...] }; public $Organism = class OrganismComponent { public $name = 'Organism'; private $controller = ...; public $components = [...]; protected $_Collection = class ComponentCollection { ... }; public $settings = [...]; protected $_componentMap = [...] }; public $WorkbenchUtils = class WorkbenchUtilsComponent { public $name = 'WorkbenchUtils'; private $controller = ...; public $components = [...]; protected $_Collection = class ComponentCollection { ... }; public $settings = [...]; protected $_componentMap = [...] }; public $Orthology = class OrthologyComponent { public $name = 'Orthology'; private $controller = ...; protected $_Collection = class ComponentCollection { ... }; public $settings = [...]; public $components = [...]; protected $_componentMap = [...] }; public $Annotation = class Annotation { public $name = 'Annotation'; public $useTable = 'annotation'; public $primaryKey = 'gene_id'; public $cacheQueries = FALSE; public $cacheSources = FALSE; public $belongsTo = [...]; public $hasMany = [...]; public $useDbConfig = 'default'; public $displayField = *uninitialized*; public $id = FALSE; public $data = [...]; public $schemaName = 'db_plaza_public_dicots_05'; public $table = 'annotation'; protected $_schema = [...]; public $validate = [...]; public $validationErrors = [...]; public $validationDomain = NULL; public $tablePrefix = ''; public $plugin = NULL; public $alias = 'Annotation'; public $tableToModel = [...]; public $hasOne = [...]; public $hasAndBelongsToMany = [...]; public $actsAs = NULL; public $Behaviors = class BehaviorCollection { ... }; public $whitelist = [...]; public $findQueryType = NULL; public $recursive = 1; public $order = NULL; public $virtualFields = [...]; protected $_associationKeys = [...]; protected $_associations = [...]; public $__backAssociation = [...]; public $__backInnerAssociation = [...]; public $__backOriginalAssociation = [...]; public $__backContainableAssociation = [...]; public $__safeUpdateMode = FALSE; public $useConsistentAfterFind = TRUE; protected $_insertID = NULL; protected $_sourceConfigured = TRUE; public $findMethods = [...]; protected $_eventManager = class CakeEventManager { ... }; protected $_validator = NULL }; public $AnnotSource = class AnnotSource { public $name = 'AnnotSource'; public $useTable = 'annot_sources'; public $primaryKey = 'species'; public $displayField = 'common_name'; public $useDbConfig = 'default'; public $id = FALSE; public $data = [...]; public $schemaName = 'db_plaza_public_dicots_05'; public $table = 'annot_sources'; protected $_schema = [...]; public $validate = [...]; public $validationErrors = [...]; public $validationDomain = NULL; public $tablePrefix = ''; public $plugin = NULL; public $alias = 'AnnotSource'; public $tableToModel = [...]; public $cacheQueries = FALSE; public $belongsTo = [...]; public $hasOne = [...]; public $hasMany = [...]; public $hasAndBelongsToMany = [...]; public $actsAs = NULL; public $Behaviors = class BehaviorCollection { ... }; public $whitelist = [...]; public $cacheSources = TRUE; public $findQueryType = NULL; public $recursive = 1; public $order = NULL; public $virtualFields = [...]; protected $_associationKeys = [...]; protected $_associations = [...]; public $__backAssociation = [...]; public $__backInnerAssociation = [...]; public $__backOriginalAssociation = [...]; public $__backContainableAssociation = [...]; public $__safeUpdateMode = FALSE; public $useConsistentAfterFind = TRUE; protected $_insertID = NULL; protected $_sourceConfigured = TRUE; public $findMethods = [...]; protected $_eventManager = class CakeEventManager { ... }; protected $_validator = NULL }; public $Configuration = class Configuration { public $name = 'Configuration'; public $useTable = 'configuration'; public $useDbConfig = 'default'; public $displayField = *uninitialized*; public $id = FALSE; public $data = [...]; public $schemaName = 'db_plaza_public_dicots_05'; public $table = 'configuration'; public $primaryKey = 'id'; protected $_schema = [...]; public $validate = [...]; public $validationErrors = [...]; public $validationDomain = NULL; public $tablePrefix = ''; public $plugin = NULL; public $alias = 'Configuration'; public $tableToModel = [...]; public $cacheQueries = FALSE; public $belongsTo = [...]; public $hasOne = [...]; public $hasMany = [...]; public $hasAndBelongsToMany = [...]; public $actsAs = NULL; public $Behaviors = class BehaviorCollection { ... }; public $whitelist = [...]; public $cacheSources = TRUE; public $findQueryType = NULL; public $recursive = 1; public $order = NULL; public $virtualFields = [...]; protected $_associationKeys = [...]; protected $_associations = [...]; public $__backAssociation = [...]; public $__backInnerAssociation = [...]; public $__backOriginalAssociation = [...]; public $__backContainableAssociation = [...]; public $__safeUpdateMode = FALSE; public $useConsistentAfterFind = TRUE; protected $_insertID = NULL; protected $_sourceConfigured = TRUE; public $findMethods = [...]; protected $_eventManager = class CakeEventManager { ... }; protected $_validator = NULL }; public $Orthologs = class Orthologs { public $name = 'Orthologs'; public $useTable = 'orthologs'; public $useDbConfig = 'default'; public $displayField = *uninitialized*; public $id = FALSE; public $data = [...]; public $schemaName = 'db_plaza_public_dicots_05'; public $table = 'orthologs'; public $primaryKey = 'id'; protected $_schema = [...]; public $validate = [...]; public $validationErrors = [...]; public $validationDomain = NULL; public $tablePrefix = ''; public $plugin = NULL; public $alias = 'Orthologs'; public $tableToModel = [...]; public $cacheQueries = FALSE; public $belongsTo = [...]; public $hasOne = [...]; public $hasMany = [...]; public $hasAndBelongsToMany = [...]; public $actsAs = NULL; public $Behaviors = class BehaviorCollection { ... }; public $whitelist = [...]; public $cacheSources = TRUE; public $findQueryType = NULL; public $recursive = 1; public $order = NULL; public $virtualFields = [...]; protected $_associationKeys = [...]; protected $_associations = [...]; public $__backAssociation = [...]; public $__backInnerAssociation = [...]; public $__backOriginalAssociation = [...]; public $__backContainableAssociation = [...]; public $__safeUpdateMode = FALSE; public $useConsistentAfterFind = TRUE; protected $_insertID = NULL; protected $_sourceConfigured = TRUE; public $findMethods = [...]; protected $_eventManager = class CakeEventManager { ... }; protected $_validator = NULL } }, $request = class CakeRequest { public $params = ['plugin' => NULL, 'controller' => 'orthologs', 'action' => 'explore', 'named' => [...], 'pass' => [...], 'models' => [...]]; public $data = []; public $query = []; public $url = 'orthologs/explore/Nitab4.5_0002611g0080/mbi'; public $base = '/plaza.dev/_dev_instances/feedback'; public $webroot = '/plaza.dev/_dev_instances/feedback/'; public $here = '/plaza.dev/_dev_instances/feedback/orthologs/explore/Nitab4.5_0002611g0080/mbi'; protected $_detectors = ['get' => [...], 'patch' => [...], 'post' => [...], 'put' => [...], 'delete' => [...], 'head' => [...], 'options' => [...], 'ssl' => [...], 'ajax' => [...], 'flash' => [...], 'mobile' => [...], 'requested' => [...], 'json' => [...], 'xml' => [...]]; protected $_input = '' } )	.../Dispatcher.php:167
4	0.0719	3136280	Controller->invokeAction( $request = class CakeRequest { public $params = ['plugin' => NULL, 'controller' => 'orthologs', 'action' => 'explore', 'named' => [...], 'pass' => [...], 'models' => [...]]; public $data = []; public $query = []; public $url = 'orthologs/explore/Nitab4.5_0002611g0080/mbi'; public $base = '/plaza.dev/_dev_instances/feedback'; public $webroot = '/plaza.dev/_dev_instances/feedback/'; public $here = '/plaza.dev/_dev_instances/feedback/orthologs/explore/Nitab4.5_0002611g0080/mbi'; protected $_detectors = ['get' => [...], 'patch' => [...], 'post' => [...], 'put' => [...], 'delete' => [...], 'head' => [...], 'options' => [...], 'ssl' => [...], 'ajax' => [...], 'flash' => [...], 'mobile' => [...], 'requested' => [...], 'json' => [...], 'xml' => [...]]; protected $_input = '' } )	.../Dispatcher.php:193
5	0.0720	3136392	invokeArgs( $object = class OrthologsController { public $name = 'Orthologs'; public $helpers = ['Session' => NULL, 'Html' => NULL, 'Form' => NULL, 'Cache' => NULL]; public $uses = [0 => 'Annotation', 1 => 'AnnotSource', 2 => 'Configuration', 3 => 'DnaMotifsCns', 4 => 'GfDatum', 5 => 'Msa', 6 => 'Orthologs', 7 => 'Similarities', 8 => 'Trees', 9 => 'AdExperiments', 10 => 'FunctionalClustersExperiments']; public $components = ['Session' => NULL, 'DataUtils' => NULL, 'FunctionalAnnotationUtils' => NULL, 'GeneFamilies' => NULL, 'Organism' => NULL, 'WorkbenchUtils' => NULL, 'Orthology' => NULL]; public $request = class CakeRequest { public $params = [...]; public $data = [...]; public $query = [...]; public $url = 'orthologs/explore/Nitab4.5_0002611g0080/mbi'; public $base = '/plaza.dev/_dev_instances/feedback'; public $webroot = '/plaza.dev/_dev_instances/feedback/'; public $here = '/plaza.dev/_dev_instances/feedback/orthologs/explore/Nitab4.5_0002611g0080/mbi'; protected $_detectors = [...]; protected $_input = '' }; public $response = class CakeResponse { protected $_statusCodes = [...]; protected $_mimeTypes = [...]; protected $_protocol = 'HTTP/1.1'; protected $_status = 200; protected $_contentType = 'text/html'; protected $_headers = [...]; protected $_body = NULL; protected $_file = NULL; protected $_fileRange = NULL; protected $_charset = 'UTF-8'; protected $_cacheDirectives = [...]; protected $_cookies = [...] }; protected $_responseClass = 'CakeResponse'; public $viewPath = 'Orthologs'; public $layoutPath = NULL; public $viewVars = ['num_paralogs' => 413, 'supporting_types' => [...], 'ortholog_types' => [...], 'all_organisms' => [...], 'target_species' => 'mbi', 'query_species' => 'nta', 'query_gene' => 'Nitab4.5_0002611g0080', 'title_for_layout' => 'Dicots PLAZA 5.0 : Integrative Orthology']; public $view = 'explore'; public $layout = 'default'; public $autoRender = TRUE; public $autoLayout = TRUE; public $Components = class ComponentCollection { protected $_Controller = ...; protected $_enabled = [...]; protected $_loaded = [...]; public $defaultPriority = 10 }; public $viewClass = 'View'; public $View = NULL; public $ext = '.ctp'; public $plugin = NULL; public $cacheAction = FALSE; public $passedArgs = [0 => 'Nitab4.5_0002611g0080', 1 => 'mbi']; public $scaffold = FALSE; public $methods = [1 => 'overview', 2 => 'explore', 3 => 'get_orthologs_type_data', 4 => 'get_supporting_data', 5 => 'get_supporting_type_data', 6 => 'get_orthologs_data']; public $modelClass = 'Annotation'; public $modelKey = 'ortholog'; public $validationErrors = NULL; protected $_mergeParent = 'AppController'; protected $_eventManager = class CakeEventManager { protected $_listeners = [...]; protected $_isGlobal = FALSE }; public $Session = class SessionComponent { protected $_Collection = class ComponentCollection { ... }; public $settings = [...]; public $components = [...]; protected $_componentMap = [...] }; public $DataUtils = class DataUtilsComponent { public $name = 'DataUtils'; public $controller = ...; public $components = [...]; protected $_Collection = class ComponentCollection { ... }; public $settings = [...]; protected $_componentMap = [...] }; public $FunctionalAnnotationUtils = class FunctionalAnnotationUtilsComponent { public $name = 'FunctionalAnnotationUtils'; public $controller = ...; public $components = [...]; protected $_Collection = class ComponentCollection { ... }; public $settings = [...]; protected $_componentMap = [...] }; public $GeneFamilies = class GeneFamiliesComponent { public $name = 'GeneFamilies'; private $controller = ...; protected $_Collection = class ComponentCollection { ... }; public $settings = [...]; public $components = [...]; protected $_componentMap = [...] }; public $Organism = class OrganismComponent { public $name = 'Organism'; private $controller = ...; public $components = [...]; protected $_Collection = class ComponentCollection { ... }; public $settings = [...]; protected $_componentMap = [...] }; public $WorkbenchUtils = class WorkbenchUtilsComponent { public $name = 'WorkbenchUtils'; private $controller = ...; public $components = [...]; protected $_Collection = class ComponentCollection { ... }; public $settings = [...]; protected $_componentMap = [...] }; public $Orthology = class OrthologyComponent { public $name = 'Orthology'; private $controller = ...; protected $_Collection = class ComponentCollection { ... }; public $settings = [...]; public $components = [...]; protected $_componentMap = [...] }; public $Annotation = class Annotation { public $name = 'Annotation'; public $useTable = 'annotation'; public $primaryKey = 'gene_id'; public $cacheQueries = FALSE; public $cacheSources = FALSE; public $belongsTo = [...]; public $hasMany = [...]; public $useDbConfig = 'default'; public $displayField = *uninitialized*; public $id = FALSE; public $data = [...]; public $schemaName = 'db_plaza_public_dicots_05'; public $table = 'annotation'; protected $_schema = [...]; public $validate = [...]; public $validationErrors = [...]; public $validationDomain = NULL; public $tablePrefix = ''; public $plugin = NULL; public $alias = 'Annotation'; public $tableToModel = [...]; public $hasOne = [...]; public $hasAndBelongsToMany = [...]; public $actsAs = NULL; public $Behaviors = class BehaviorCollection { ... }; public $whitelist = [...]; public $findQueryType = NULL; public $recursive = 1; public $order = NULL; public $virtualFields = [...]; protected $_associationKeys = [...]; protected $_associations = [...]; public $__backAssociation = [...]; public $__backInnerAssociation = [...]; public $__backOriginalAssociation = [...]; public $__backContainableAssociation = [...]; public $__safeUpdateMode = FALSE; public $useConsistentAfterFind = TRUE; protected $_insertID = NULL; protected $_sourceConfigured = TRUE; public $findMethods = [...]; protected $_eventManager = class CakeEventManager { ... }; protected $_validator = NULL }; public $AnnotSource = class AnnotSource { public $name = 'AnnotSource'; public $useTable = 'annot_sources'; public $primaryKey = 'species'; public $displayField = 'common_name'; public $useDbConfig = 'default'; public $id = FALSE; public $data = [...]; public $schemaName = 'db_plaza_public_dicots_05'; public $table = 'annot_sources'; protected $_schema = [...]; public $validate = [...]; public $validationErrors = [...]; public $validationDomain = NULL; public $tablePrefix = ''; public $plugin = NULL; public $alias = 'AnnotSource'; public $tableToModel = [...]; public $cacheQueries = FALSE; public $belongsTo = [...]; public $hasOne = [...]; public $hasMany = [...]; public $hasAndBelongsToMany = [...]; public $actsAs = NULL; public $Behaviors = class BehaviorCollection { ... }; public $whitelist = [...]; public $cacheSources = TRUE; public $findQueryType = NULL; public $recursive = 1; public $order = NULL; public $virtualFields = [...]; protected $_associationKeys = [...]; protected $_associations = [...]; public $__backAssociation = [...]; public $__backInnerAssociation = [...]; public $__backOriginalAssociation = [...]; public $__backContainableAssociation = [...]; public $__safeUpdateMode = FALSE; public $useConsistentAfterFind = TRUE; protected $_insertID = NULL; protected $_sourceConfigured = TRUE; public $findMethods = [...]; protected $_eventManager = class CakeEventManager { ... }; protected $_validator = NULL }; public $Configuration = class Configuration { public $name = 'Configuration'; public $useTable = 'configuration'; public $useDbConfig = 'default'; public $displayField = *uninitialized*; public $id = FALSE; public $data = [...]; public $schemaName = 'db_plaza_public_dicots_05'; public $table = 'configuration'; public $primaryKey = 'id'; protected $_schema = [...]; public $validate = [...]; public $validationErrors = [...]; public $validationDomain = NULL; public $tablePrefix = ''; public $plugin = NULL; public $alias = 'Configuration'; public $tableToModel = [...]; public $cacheQueries = FALSE; public $belongsTo = [...]; public $hasOne = [...]; public $hasMany = [...]; public $hasAndBelongsToMany = [...]; public $actsAs = NULL; public $Behaviors = class BehaviorCollection { ... }; public $whitelist = [...]; public $cacheSources = TRUE; public $findQueryType = NULL; public $recursive = 1; public $order = NULL; public $virtualFields = [...]; protected $_associationKeys = [...]; protected $_associations = [...]; public $__backAssociation = [...]; public $__backInnerAssociation = [...]; public $__backOriginalAssociation = [...]; public $__backContainableAssociation = [...]; public $__safeUpdateMode = FALSE; public $useConsistentAfterFind = TRUE; protected $_insertID = NULL; protected $_sourceConfigured = TRUE; public $findMethods = [...]; protected $_eventManager = class CakeEventManager { ... }; protected $_validator = NULL }; public $Orthologs = class Orthologs { public $name = 'Orthologs'; public $useTable = 'orthologs'; public $useDbConfig = 'default'; public $displayField = *uninitialized*; public $id = FALSE; public $data = [...]; public $schemaName = 'db_plaza_public_dicots_05'; public $table = 'orthologs'; public $primaryKey = 'id'; protected $_schema = [...]; public $validate = [...]; public $validationErrors = [...]; public $validationDomain = NULL; public $tablePrefix = ''; public $plugin = NULL; public $alias = 'Orthologs'; public $tableToModel = [...]; public $cacheQueries = FALSE; public $belongsTo = [...]; public $hasOne = [...]; public $hasMany = [...]; public $hasAndBelongsToMany = [...]; public $actsAs = NULL; public $Behaviors = class BehaviorCollection { ... }; public $whitelist = [...]; public $cacheSources = TRUE; public $findQueryType = NULL; public $recursive = 1; public $order = NULL; public $virtualFields = [...]; protected $_associationKeys = [...]; protected $_associations = [...]; public $__backAssociation = [...]; public $__backInnerAssociation = [...]; public $__backOriginalAssociation = [...]; public $__backContainableAssociation = [...]; public $__safeUpdateMode = FALSE; public $useConsistentAfterFind = TRUE; protected $_insertID = NULL; protected $_sourceConfigured = TRUE; public $findMethods = [...]; protected $_eventManager = class CakeEventManager { ... }; protected $_validator = NULL } }, $args = [0 => 'Nitab4.5_0002611g0080', 1 => 'mbi'] )	.../Controller.php:491
6	0.0720	3136488	OrthologsController->explore( $query_gene = 'Nitab4.5_0002611g0080', $target_species = 'mbi' )	.../Controller.php:491
7	1.6592	100292512	array_unique( $arg = [0 => 'MBI17_g07956_MAGBIO', 1 => 'MBI19_g08860_MAGBIO', 2 => 'MBI15_g03377_MAGBIO', 3 => 'MBI03_g26340_MAGBIO', 4 => 'MBI19_g06163_MAGBIO', 5 => 'MBI18_g25253_MAGBIO', 6 => 'MBI18_g29979_MAGBIO', 7 => 'MBI18_g28084_MAGBIO', 8 => 'MBI02_g11007_MAGBIO', 9 => 'MBI08_g12695_MAGBIO', 10 => 'MBI04_g00370_MAGBIO', 11 => 'MBI11_g00109_MAGBIO', 12 => 'MBI16_g04074_MAGBIO', 13 => 'MBI15_g04619_MAGBIO', 14 => 'MBI14_g02791_MAGBIO', 15 => 'MBI04_g22186_MAGBIO', 16 => 'MBI02_g02975_MAGBIO', 17 => 'MBI04_g29474_MAGBIO', 18 => 'MBI09_g32121_MAGBIO', 19 => 'MBI03_g12763_MAGBIO', 20 => 'MBI15_g36985_MAGBIO', 21 => 'MBI18_g34969_MAGBIO', 22 => 'MBI05_g39190_MAGBIO', 23 => 'MBI16_g06244_MAGBIO', 24 => 'MBI15_g40758_MAGBIO', 25 => 'MBI02_g35308_MAGBIO', 26 => 'MBI05_g17913_MAGBIO', 27 => 'MBI19_g04941_MAGBIO', 28 => 'MBI16_g11014_MAGBIO', 29 => 'MBI16_g31725_MAGBIO', 30 => 'MBI18_g13997_MAGBIO', 31 => 'MBI16_g08500_MAGBIO', 32 => 'MBI15_g03500_MAGBIO', 33 => 'MBI05_g19997_MAGBIO', 34 => 'MBI07_g36524_MAGBIO', 35 => 'MBI11_g13052_MAGBIO', 36 => 'MBI17_g24534_MAGBIO', 37 => 'MBI03_g05800_MAGBIO', 38 => 'MBI15_g23973_MAGBIO', 39 => 'MBI16_g11027_MAGBIO', 40 => 'MBI11_g11969_MAGBIO', 41 => 'MBI18_g33597_MAGBIO', 42 => 'MBI18_g33700_MAGBIO', 43 => 'MBI03_g13113_MAGBIO', 44 => 'MBI01_g00121_MAGBIO', 45 => 'MBI18_g41691_MAGBIO', 46 => 'MBI15_g26834_MAGBIO', 47 => 'MBI15_g26699_MAGBIO', 48 => 'MBI07_g29091_MAGBIO', 49 => 'MBI02_g19786_MAGBIO', 50 => 'MBI05_g39706_MAGBIO', 51 => 'MBI04_g19011_MAGBIO', 52 => 'MBI19_g47702_MAGBIO', 53 => 'MBI01_g15504_MAGBIO', 54 => 'MBI12_g35624_MAGBIO', 55 => 'MBI16_g12290_MAGBIO', 56 => 'MBI17_g38038_MAGBIO', 57 => 'MBI15_g33927_MAGBIO', 58 => 'MBI17_g07077_MAGBIO', 59 => 'MBI19_g09853_MAGBIO', 60 => 'MBI14_g30956_MAGBIO', 61 => 'MBI18_g35133_MAGBIO', 62 => 'MBI08_g12704_MAGBIO', 63 => 'MBI02_g35302_MAGBIO', 64 => 'MBI08_g18894_MAGBIO', 65 => 'MBI18_g23792_MAGBIO', 66 => 'MBI04_g21507_MAGBIO', 67 => 'MBI07_g36525_MAGBIO', 68 => 'MBI01_g39980_MAGBIO', 69 => 'MBI15_g06577_MAGBIO', 70 => 'MBI11_g45240_MAGBIO', 71 => 'MBI07_g09325_MAGBIO', 72 => 'MBI08_g17700_MAGBIO', 73 => 'MBI01_g03371_MAGBIO', 74 => 'MBI17_g12074_MAGBIO', 75 => 'MBI01_g02775_MAGBIO', 76 => 'MBI17_g01629_MAGBIO', 77 => 'MBI11_g00132_MAGBIO', 78 => 'MBI18_g15860_MAGBIO', 79 => 'MBI05_g43776_MAGBIO', 80 => 'MBI16_g36780_MAGBIO', 81 => 'MBI15_g11949_MAGBIO', 82 => 'MBI15_g26698_MAGBIO', 83 => 'MBI10_g04435_MAGBIO', 84 => 'MBI11_g25859_MAGBIO', 85 => 'MBI04_g33813_MAGBIO', 86 => 'MBI04_g22601_MAGBIO', 87 => 'MBI07_g42492_MAGBIO', 88 => 'MBI19_g02908_MAGBIO', 89 => 'MBI04_g00348_MAGBIO', 90 => 'MBI18_g44731_MAGBIO', 91 => 'MBI01_g21234_MAGBIO', 92 => 'MBI12_g21986_MAGBIO', 93 => 'MBI18_g11415_MAGBIO', 94 => 'MBI05_g42970_MAGBIO', 95 => 'MBI18_g28063_MAGBIO', 96 => 'MBI07_g11723_MAGBIO', 97 => 'MBI16_g18342_MAGBIO', 98 => 'MBI03_g34698_MAGBIO', 99 => 'MBI08_g18902_MAGBIO', 100 => 'MBI12_g17743_MAGBIO', 101 => 'MBI04_g45788_MAGBIO', 102 => 'MBI04_g40611_MAGBIO', 103 => 'MBI04_g34097_MAGBIO', 104 => 'MBI04_g12639_MAGBIO', 105 => 'MBI10_g15979_MAGBIO', 106 => 'MBI16_g12288_MAGBIO', 107 => 'MBI19_g12817_MAGBIO', 108 => 'MBI04_g42248_MAGBIO', 109 => 'MBI06_g11038_MAGBIO', 110 => 'MBI11_g38069_MAGBIO', 111 => 'MBI07_g42484_MAGBIO', 112 => 'MBI01_g10300_MAGBIO', 113 => 'MBI18_g30685_MAGBIO', 114 => 'MBI11_g17718_MAGBIO', 115 => 'MBI08_g04929_MAGBIO', 116 => 'MBI14_g26933_MAGBIO', 117 => 'MBI16_g37125_MAGBIO', 118 => 'MBI19_g10327_MAGBIO', 119 => 'MBI12_g15058_MAGBIO', 120 => 'MBI10_g27420_MAGBIO', 121 => 'MBI17_g17499_MAGBIO', 122 => 'MBI03_g39180_MAGBIO', 123 => 'MBI18_g33703_MAGBIO', 124 => 'MBI05_g24487_MAGBIO', 125 => 'MBI14_g02850_MAGBIO', 126 => 'MBI03_g40524_MAGBIO', 127 => 'MBI02_g26231_MAGBIO', ...] )	.../OrthologsController.php:135
8	1.7600	100347664	App::shutdown( )	.../App.php:0
9	1.7600	100347696	App::_checkFatalError( )	.../App.php:943
10	1.7600	100348440	ErrorHandler::handleError( $code = 1, $description = 'Allowed memory size of 402653184 bytes exhausted (tried to allocate 41943040 bytes)', $file = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/Controller/OrthologsController.php', $line = 135, $context = [] )	.../App.php:970
11	1.7600	100348440	ErrorHandler::handleFatalError( $code = 1, $description = 'Allowed memory size of 402653184 bytes exhausted (tried to allocate 41943040 bytes)', $file = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/Controller/OrthologsController.php', $line = 135 )	.../ErrorHandler.php:212
12	1.7619	100305736	ErrorHandler::handleException( $exception = class FatalErrorException { protected $_attributes = []; protected $_messageTemplate = ''; protected $_responseHeaders = NULL; protected $message = 'Allowed memory size of 402653184 bytes exhausted (tried to allocate 41943040 bytes)'; private ${Exception}string = ''; protected $code = 500; protected $file = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/Controller/OrthologsController.php'; protected $line = 135; private ${Exception}trace = [0 => [...], 1 => [...], 2 => [...], 3 => [...]]; private ${Exception}previous = NULL } )	.../ErrorHandler.php:269
13	1.7675	100380672	ExceptionRenderer->render( )	.../ErrorHandler.php:127
14	1.7675	100380672	ExceptionRenderer->_cakeError( $error = class FatalErrorException { protected $_attributes = []; protected $_messageTemplate = ''; protected $_responseHeaders = NULL; protected $message = 'Allowed memory size of 402653184 bytes exhausted (tried to allocate 41943040 bytes)'; private ${Exception}string = ''; protected $code = 500; protected $file = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/Controller/OrthologsController.php'; protected $line = 135; private ${Exception}trace = [0 => [...], 1 => [...], 2 => [...], 3 => [...]]; private ${Exception}previous = NULL } )	.../ExceptionRenderer.php:190
15	1.7675	100381656	ExceptionRenderer->_outputMessage( $template = 'fatalError' )	.../ExceptionRenderer.php:213
16	1.7675	100381656	Controller->render( $view = 'fatalError', $layout = ??? )	.../ExceptionRenderer.php:292
17	1.8188	101449288	View->render( $view = 'fatalError', $layout = NULL )	.../Controller.php:963
18	1.8189	101459440	View->_render( $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/lib/Cake/View/Errors/fatal_error.ctp', $data = ??? )	.../View.php:473
19	1.8189	101460384	View->_evaluate( $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/lib/Cake/View/Errors/fatal_error.ctp', $dataForView = ['navigation_bar_info' => ['num_colinearity_runs' => 1, 'num_colinearity_with_dating_runs' => 0, 'num_functional_clusters_runs' => 6, 'has_pan_genomes' => FALSE], 'code' => 500, 'name' => 'Allowed memory size of 402653184 bytes exhausted (tried to allocate 41943040 bytes)', 'message' => 'Allowed memory size of 402653184 bytes exhausted (tried to allocate 41943040 bytes)', 'url' => '/plaza.dev/_dev_instances/feedback/orthologs/explore/Nitab4.5_0002611g0080/mbi', 'error' => class FatalErrorException { protected $_attributes = [...]; protected $_messageTemplate = ''; protected $_responseHeaders = NULL; protected $message = 'Allowed memory size of 402653184 bytes exhausted (tried to allocate 41943040 bytes)'; private ${Exception}string = ''; protected $code = 500; protected $file = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/Controller/OrthologsController.php'; protected $line = 135; private ${Exception}trace = [...]; private ${Exception}previous = NULL }, '_serialize' => [0 => 'code', 1 => 'name', 2 => 'message', 3 => 'url']] )	.../View.php:933
20	1.8208	101482128	include( '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/lib/Cake/View/Errors/fatal_error.ctp )	.../View.php:971
21	1.8266	101837824	xdebug_print_function_stack( )	.../fatal_error.ctp:37