Gene: Thhalv10026936m.g

General Information

Structural Information

  • Species Eutrema salsugineum
  • Gene Identifier Thhalv10026936m.g
  • Transcript Identifier Thhalv10026936m
  • Gene Type Coding gene
  • Location scaffold_1 : 2537902-2543675 : negative

Gene Family Information

  • ID HOM05D001201
  • #Genes/#Species 520/96
  • Phylogenetic origin

Gene Duplication Information

Labels

Identifiers

  • id Thhalv10026936m.g.v1.0
  • pacid 20195909

Descriptions

  • Description PTHR10359:SF22 - DEMETER-LIKE PROTEIN 2-RELATED
  • Loading (ortholog descriptions from ath)...

Functional Annotation

Biological Process

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0080111
IEA
InterProDNA demethylation
GO:0006281
IEA
InterProDNA repair
GO:0006284
ISO
PLAZA Homology (enrichment)base-excision repair HOM05D001201
GO:0010150
ISO
PLAZA Integrative Orthologyleaf senescence AT4G34060
GO:0010216
ISO
PLAZA Integrative Orthologymaintenance of DNA methylation AT4G34060

Molecular Function

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0019104
IEA
InterProDNA N-glycosylase activity
GO:0035514
IEA
InterProDNA demethylase activity
GO:0003824
IEA
InterProcatalytic activity
GO:0051747
ISO
PLAZA Integrative Orthologycytosine C-5 DNA demethylase activity AT4G34060
GO:0051539
ISO
PLAZA Homology (enrichment)4 iron, 4 sulfur cluster binding HOM05D001201

Cellular Component

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0005634
ISO
PLAZA Integrative Orthologynucleus AT4G34060

Color Legend

Experimental Evidence
Computational Reviewed Evidence
Electronic Evidence
GO Sources: Primary Orthology Homology
Show redundant parents:
InterPro Description
IPR028925 Demeter, RRM-fold domain
IPR023170 Helix-hairpin-helix, base-excision DNA repair, C-terminal
IPR044811 DNA glycosylase, plant
IPR028924 Permuted single zf-CXXC unit
IPR011257 DNA glycosylase
Mapman id Description
12.5.3.1 Chromatin organisation.DNA methylation.ROS1-mediated DNA demethylation.methylcytosine-specific DNA glycosylase (ROS1)