Gene: Sopen06g028860
General Information
Structural Information
- Species Solanum pennellii
- Gene Identifier Sopen06g028860
- Transcript Identifier Sopen06g028860.1
- Gene Type Coding gene
- Location Spenn-ch06 : 55417373-55419973 : positive
Gene Family Information
- ID HOM05D001851
- #Genes/#Species 354/98
- Phylogenetic origin
- ID ORTHO05D002237
- #Genes/#Species 305/98
- Phylogenetic origin
Gene Duplication Information
- Block Duplication Block duplicate
Labels
Identifiers
- tid Sopen06g028860.1
Descriptions
- Description 40S ribosomal protein S3a (CYC07 protein) - Catharanthus roseus (Rosy periwinkle) (Madagascar periwinkle), Ribosomal protein S3Ae | FUNCTIONS IN: structural constituent of ribosome | INVOLVED IN: translation | LOCATED IN: in 6 components | EXPRESSED IN: 23 plant structures | EXPRESSED DURING: 13 growth stages | CONTAINS InterPro DOMAIN/s: Ribosomal protein S3Ae, conserved site , Ribosomal protein S3Ae | BEST Arabidopsis thaliana protein match is: Ribosomal protein S3Ae
- Loading (ortholog descriptions from ath)...
Functional Annotation
Biological Process
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0006412 | IEA | InterPro | translation |
Molecular Function
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0003735 | IEA | InterPro | structural constituent of ribosome | |
| GO:0003729 | ISO | PLAZA Integrative Orthology | mRNA binding | AT3G04840 |
Cellular Component
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0005840 | IEA | InterPro | ribosome | |
| GO:0009506 | ISO | PLAZA Integrative Orthology | plasmodesma | AT3G04840 |
| GO:0022626 | ISO | PLAZA Integrative Orthology | cytosolic ribosome | AT3G04840 |
| GO:0022627 | ISO | PLAZA Integrative Orthology | cytosolic small ribosomal subunit | AT3G04840 |
| GO:0005618 | ISO | PLAZA Integrative Orthology | cell wall | AT4G34670 |
| GO:0005829 | ISO | PLAZA Integrative Orthology | cytosol | AT3G04840 |
| GO:0005730 | ISO | PLAZA Integrative Orthology | nucleolus | AT4G34670 |
| GO:0005886 | ISO | PLAZA Integrative Orthology | plasma membrane | AT3G04840 |
| GO:0042788 | ISO | PLAZA Integrative Orthology | polysomal ribosome | AT3G04840 |
Color Legend
| Experimental Evidence |
| Computational Reviewed Evidence |
| Electronic Evidence |
| InterPro | Description |
|---|---|
| IPR001593 | Ribosomal protein S3Ae |
| Mapman id | Description |
|---|---|
| 17.1.3.1.4 | Protein biosynthesis.ribosome biogenesis.small ribosomal subunit (SSU).SSU proteome.component RPS3a |