Gene: Solyc11g072340.2

General Information

Structural Information

  • Species Solanum lycopersicum
  • Gene Identifier Solyc11g072340.2
  • Transcript Identifier Solyc11g072340.2.1
  • Gene Type Coding gene
  • Location SL4.0ch11 : 53615280-53618091 : positive

Gene Family Information

  • ID HOM05D001628
  • #Genes/#Species 396/97
  • Phylogenetic origin

Gene Duplication Information

Labels

Identifiers

  • tid Solyc11g072340.2.1
  • gene_id Solyc11g072340

Descriptions

  • Description Serine/arginine-rich-splicing factor RS40 (AHRD V3.3 *** A0A0N0RI43_NICAT)
  • Loading (ortholog descriptions from ath)...

Functional Annotation

Biological Process

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0031053
ISO
PLAZA Integrative Orthologyprimary miRNA processing AT4G25500
GO:0000398
ISO
PLAZA Integrative OrthologymRNA splicing, via spliceosome AT3G61860

Molecular Function

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0003676
IEA
InterPronucleic acid binding
GO:0005515
ISO
PLAZA Integrative Orthologyprotein binding AT3G61860
GO:0003729
ISO
PLAZA Integrative OrthologymRNA binding AT3G61860

Cellular Component

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0016607
ISO
PLAZA Integrative Orthologynuclear speck AT3G61860
GO:0005681
ISO
PLAZA Integrative Orthologyspliceosomal complex AT3G61860
GO:0010445
ISO
PLAZA Integrative Orthologynuclear dicing body AT4G25500

Color Legend

Experimental Evidence
Computational Reviewed Evidence
Electronic Evidence
GO Sources: Primary Orthology Homology
Show redundant parents:
InterPro Description
IPR035979 RNA-binding domain superfamily
IPR012677 Nucleotide-binding alpha-beta plait domain superfamily
IPR000504 RNA recognition motif domain
Mapman id Description
16.2.6.3 RNA processing.pre-mRNA splicing.spliceosome-associated non-snRNP factor activities.splicing factor (RS31/40/41)