Gene: PGSC0003DMG400024601
General Information
Structural Information
- Species Solanum tuberosum
- Gene Identifier PGSC0003DMG400024601
- Transcript Identifier PGSC0003DMT400063252
- Gene Type Coding gene
- Location ST4.03ch03 : 54463014-54469891 : negative
Gene Family Information
- ID HOM05D000032
- #Genes/#Species 5307/100
- Phylogenetic origin
- ID ORTHO05D003522
- #Genes/#Species 219/100
- Phylogenetic origin
Gene Duplication Information
Labels
Identifiers
- pacid 37464066
- id PGSC0003DMG400024601.v4.03
- uniprot M1CAB9
Descriptions
- Description Dead box ATP-dependent RNA helicase
- Loading (ortholog descriptions from ath)...
Functional Annotation
Biological Process
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0048866 | ISO | PLAZA Integrative Orthology | stem cell fate specification | AT5G65900 |
| GO:0016070 | ISO | PLAZA Integrative Orthology | RNA metabolic process | Solyc03g114370.4 |
| GO:0009790 | ISO | PLAZA Integrative Orthology | embryo development | AT5G65900 |
| GO:0000463 | IBA | GOA Database | maturation of LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) |
Molecular Function
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0003724 | IEA | GOA Database | RNA helicase activity | |
| GO:0003724 | IEA | InterPro | RNA helicase activity | |
| GO:0005515 | ISO | PLAZA Integrative Orthology | protein binding | AT5G65900 |
| GO:0003676 | IEA | GOA Database | nucleic acid binding | |
| GO:0003676 | IEA | InterPro | nucleic acid binding | |
| GO:0005524 | IEA | GOA Database | ATP binding | |
| GO:0005524 | IEA | InterPro | ATP binding | |
| GO:0004386 | IEA | GOA Database | helicase activity | |
| GO:0016787 | IEA | GOA Database | hydrolase activity | |
| GO:0000166 | IEA | GOA Database | nucleotide binding | |
| GO:0003723 | IEA | GOA Database | RNA binding |
Cellular Component
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0005634 | ISO | PLAZA Integrative Orthology | nucleus | AT5G65900 |
| GO:0005730 | IBA | GOA Database | nucleolus |
Color Legend
| Experimental Evidence |
| Computational Reviewed Evidence |
| Electronic Evidence |
| InterPro | Description |
|---|---|
| IPR027417 | P-loop containing nucleoside triphosphate hydrolase |
| IPR001650 | Helicase, C-terminal |
| IPR011545 | DEAD/DEAH box helicase domain |
| IPR025313 | Domain of unknown function DUF4217 |
| IPR014001 | Helicase superfamily 1/2, ATP-binding domain |
| IPR044773 | DDX18/Has1, DEAD-box helicase domain |
| Mapman id | Description |
|---|---|
| 35.1 | not assigned.annotated |