Gene: AT3G11580

General Information

Structural Information

  • Species Arabidopsis thaliana
  • Gene Identifier AT3G11580
  • Transcript Identifier AT3G11580.2
  • Gene Type Coding gene
  • Location Chr3 : 3650579-3651271 : negative

Gene Family Information

  • ID HOM05D000466
  • #Genes/#Species 1131/96
  • Phylogenetic origin

Gene Duplication Information

Labels

Identifiers

  • tid AT3G11580.2
  • uniprot Q8RYD3

Descriptions

  • Description AP2/B3-like transcriptional factor family protein
  • Computational description AP2/B3-like transcriptional factor family protein; FUNCTIONS IN: sequence-specific DNA binding transcription factor activity; INVOLVED IN: regulation of transcription, DNA-dependent; LOCATED IN: cellular_component unknown; EXPRESSED IN: 18 plant structures; EXPRESSED DURING: 9 growth stages; CONTAINS InterPro DOMAIN/s: Transcriptional factor B3 (InterPro:IPR003340); BEST Arabidopsis thaliana protein match is: AP2/B3-like transcriptional factor family protein (TAIR:AT5G06250.2); Has 1345 Blast hits to 1343 proteins in 71 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 1345; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
  • Computational description AP2/B3-like transcriptional factor family protein; FUNCTIONS IN: sequence-specific DNA binding transcription factor activity; INVOLVED IN: regulation of transcription, DNA-dependent; LOCATED IN: cellular_component unknown; EXPRESSED IN: 18 plant structures; EXPRESSED DURING: 9 growth stages; CONTAINS InterPro DOMAIN/s: Transcriptional factor B3 (InterPro:IPR003340); BEST Arabidopsis thaliana protein match is: AP2/B3-like transcriptional factor family protein (TAIR:AT5G06250.2); Has 1339 Blast hits to 1337 proteins in 71 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 1339; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
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Functional Annotation

Biological Process

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0019760
IMP
Gene Ontologyglucosinolate metabolic process1
GO:0080113
IMP
Gene Ontologyregulation of seed growth2
GO:0006355
IEA
GOA Databaseregulation of transcription, DNA-templated

Molecular Function

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0003700
IPI
ISS
IEA
Gene OntologyDNA-binding transcription factor activity2 3
GO:0003700
IEA
InterProDNA-binding transcription factor activity
GO:0000976
IPI
Gene Ontologytranscription cis-regulatory region binding4
GO:0043565
IDA
Gene Ontologysequence-specific DNA binding2
GO:0003677
IEA
GOA DatabaseDNA binding
GO:0003677
IEA
InterProDNA binding

Cellular Component

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0005634
IEA
GOA Databasenucleus
GO:0005634
IDA
ISM
Gene Ontologynucleus2

Color Legend

Experimental Evidence
Computational Reviewed Evidence
Electronic Evidence
GO Sources: Primary Orthology Homology
Show redundant parents:
InterPro Description
IPR044800 B3 domain-containing transcription factor LEC2-like
IPR015300 DNA-binding pseudobarrel domain superfamily
IPR003340 B3 DNA binding domain
Mapman id Description
15.5.5.3 RNA biosynthesis.transcriptional regulation.B3 transcription factor superfamily.transcription factor (RAV/NGATHA)