Paralogs (intra-species colinear regions)

Gene id Description Chromosome Strand Multiplicon
Solyc01g105610.1 RING/U-box superfamily protein (AHRD V3.3 *-* A0A2U1LC40_ARTAN) SL4.0ch01 + View
Solyc04g074790.3 RING/U-box superfamily protein (AHRD V3.3 *-* F4JJ02_ARATH) SL4.0ch04 + View
Solyc04g014220.1 RING/U-box superfamily protein (AHRD V3.3 *-* F4JJ02_ARATH) SL4.0ch04 + View

Orthologs (inter-species colinear regions)

Organism Gene id Description Chromosome Strand Multiplicon
Aethionema arabicum Aa31LG4G8340 LG-4 + View
Aethionema arabicum Aa31LG3G16800 LG-3 - View
Acer truncatum Atru.chr3.1337 chr3 - View
Acer truncatum Atru.chr13.1110 chr13 - View
Acer truncatum Atru.chr6.1222 chr6 + View
Actinidia chinensis Actinidia24011 Lachesis_group2 + View
Actinidia chinensis Actinidia01863 Lachesis_group11 - View
Arabidopsis lyrata AL6G20880 scaffold_6 + View
Avicennia marina MSTRG.3753 ScioBoG_102836_HRSCAF_103072 - View
Amaranthus hybridus Ah.03g141920 RING-H2 finger protein ATL51 (EC 2.3.2.27) (RING-type E3 ubiquitin transferase ATL51) AmaHy_arrow1_Scaffold_3 - View
Aquilegia oxysepala Aqoxy6G00699 CHR06 - View
Arachis hypogaea arahy.Tifrunner.gnm1.ann1.1BG2C5 PTHR14155//PTHR14155:SF101 - RING FINGER DOMAIN-CONTAINING // SUBFAMILY NOT NAMED arahy.Tifrunner.gnm1.Arahy.10 - View
Arachis hypogaea arahy.Tifrunner.gnm1.ann1.RYUR57 PTHR14155//PTHR14155:SF94 - RING FINGER DOMAIN-CONTAINING // RING-H2 FINGER PROTEIN ATL33-RELATED arahy.Tifrunner.gnm1.Arahy.13 - View
Arachis hypogaea arahy.Tifrunner.gnm1.ann1.WBD5UZ PF00560//PF08263//PF13639//PF13855 - Leucine Rich Repeat (LRR_1) // Leucine rich repeat N-terminal domain (LRRNT_2) // Ring finger domain (zf-RING_2) // Leucine rich repeat (LRR_8) arahy.Tifrunner.gnm1.Arahy.20 - View
Arachis hypogaea arahy.Tifrunner.gnm1.ann1.2KT40Z PTHR14155//PTHR14155:SF94 - RING FINGER DOMAIN-CONTAINING // RING-H2 FINGER PROTEIN ATL33-RELATED arahy.Tifrunner.gnm1.Arahy.03 - View
Arachis hypogaea arahy.Tifrunner.gnm1.ann1.CUW7MQ PTHR14155//PTHR14155:SF174 - RING FINGER DOMAIN-CONTAINING // SUBFAMILY NOT NAMED arahy.Tifrunner.gnm1.Arahy.17 - View
Arabidopsis thaliana AT4G38140 RING/U-box superfamily protein RING/U-box superfamily protein%3B FUNCTIONS IN: zinc ion binding%3B LOCATED IN: anchored to membrane%3B CONTAINS InterPro DOMAIN/s: Zinc finger%2C RING-type (InterPro:IPR001841)%2C Zinc finger%2C C3HC4 RING-type (InterPro:IPR018957)%3B BEST Arabidopsis thaliana protein match is: RING/U-box superfamily protein (TAIR:AT2G18650.1)%3B Has 7548 Blast hits to 7531 proteins in 260 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 1845%3B Fungi - 600%3B Plants - 4291%3B Viruses - 10%3B Other Eukaryotes - 802 (source: NCBI BLink). Chr4 - View
Arabidopsis thaliana AT5G10380 RING/U-box superfamily protein Encodes a RING finger domain protein with E3 ligase activity that is localized to the lipid rafts of the plasma membrane. Expression is increased in response to fungal pathogen. May be involved in regulation of programmed cell death by facilitating degredation of regulation of PDC activators. RING1%3B CONTAINS InterPro DOMAIN/s: Zinc finger%2C RING-type (InterPro:IPR001841)%2C Zinc finger%2C C3HC4 RING-type (InterPro:IPR018957)%3B BEST Arabidopsis thaliana protein match is: RING/U-box superfamily protein (TAIR:AT1G72220.1)%3B Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 736%3B Fungi - 347%3B Plants - 385%3B Viruses - 0%3B Other Eukaryotes - 339 (source: NCBI BLink). Chr5 + View
Amborella trichopoda ATR0684G056 AmTr_v1.0_scaffold00008 - View
Brassica carinata BcaB08g37112 ChrB08 - View
Brassica napus C09p67030 C09 - View
Brassica napus A10p27220 A10 - View
Brassica oleracea BolC9t59476H C9 - View
Brassica rapa BraA10t44772Z A10 - View
Beta vulgaris EL10Ac1g01133 PTHR14155//PTHR14155:SF174 - RING FINGER DOMAIN-CONTAINING // SUBFAMILY NOT NAMED Chr1_EL10_PGA_scaffold3 - View
Beta vulgaris EL10Ac6g14811 PTHR14155:SF94 - RING-H2 FINGER PROTEIN ATL33-RELATED Chr6_EL10_PGA_scaffold0 - View
Camellia sinensis var. sinensis CSS0001119 PREDICTED: RING-H2 finger protein ATL54 [Vitis vinifera] Chr4 - View
Camellia sinensis var. sinensis CSS0014171 unnamed protein product [Coffea canephora] Chr1 - View
Camellia sinensis var. sinensis CSS0030238 RING/U-box superfamily protein, putative [Theobroma cacao] Chr9 + View
Cannabis sativa CANSAT01G0420 NC_044373.1 + View
Cannabis sativa CANSAT11G1436 NC_044377.1 + View
Corylus avellana Haze_24826 Similar to ATL55: E3 ubiquitin-protein ligase RING1 (Arabidopsis thaliana OX%3D3702) 8 + View
Corylus avellana Haze_10564 Similar to ATL54: RING-H2 finger protein ATL54 (Arabidopsis thaliana OX%3D3702) 9 - View
Coffea canephora Cc07_g14510 Putative uncharacterized protein chr7 - View
Coffea canephora Cc10_g06590 Ring finger protein, putative chr10 - View
Coffea canephora Cc02_g21130 Putative RING-H2 finger protein ATL52 chr2 - View
Citrus clementina Ciclev10025698m.g scaffold_7 - View
Citrus clementina Ciclev10001098m.g scaffold_5 - View
Ceratophyllum demersum CDE03G0406 12 - View
Ceratophyllum demersum CDE06G2580 4 + View
Carpinus fangiana Cfa005686 Cfa02 + View
Carpinus fangiana Cfa002589 Cfa01 + View
Cardamine hirsuta CARHR202920 Ring finger protein, putative Chr6 - View
Carya illinoinensis CiPaw.05G032000 PTHR14155//PTHR14155:SF174 - RING FINGER DOMAIN-CONTAINING // SUBFAMILY NOT NAMED Chr05 - View
Carya illinoinensis CiPaw.03G146500 PTHR14155:SF94 - RING-H2 FINGER PROTEIN ATL33-RELATED Chr03 + View
Carya illinoinensis CiPaw.04G104200 PTHR14155//PTHR14155:SF94 - RING FINGER DOMAIN-CONTAINING // RING-H2 FINGER PROTEIN ATL33-RELATED Chr04 + View
Carya illinoinensis CiPaw.06G156200 PTHR14155//PTHR14155:SF101 - RING FINGER DOMAIN-CONTAINING // SUBFAMILY NOT NAMED Chr06 + View
Carya illinoinensis CiPaw.15G044900 K19041 - E3 ubiquitin-protein ligase RNF38/44 [EC:6.3.2.19] (RNF38_44) Chr15 - View
Citrullus lanatus ClCG01G018570 Ring finger protein, putative CG_Chr01 - View
Citrullus lanatus ClCG08G011350 Ring finger protein, putative CG_Chr08 + View
Cucumis melo MELO3C007735.2 E3 ubiquitin-protein ligase RING1 chr08 - View
Cucumis melo MELO3C011051.2 RING-H2 finger protein ATL54-like chr03 - View
Carica papaya Cpa.g.sc36.190 supercontig_36 + View
Carica papaya Cpa.g.sc55.65 supercontig_55 - View
Chenopodium quinoa AUR62018981 ATL54: RING-H2 finger protein ATL54 C_Quinoa_Scaffold_3876 + View
Chenopodium quinoa AUR62012903 ATL51: RING-H2 finger protein ATL51 C_Quinoa_Scaffold_1040 - View
Chenopodium quinoa AUR62027198 ATL54: RING-H2 finger protein ATL54 C_Quinoa_Scaffold_2924 - View
Chenopodium quinoa AUR62027822 ATL54: RING-H2 finger protein ATL54 C_Quinoa_Scaffold_3784 + View
Capsella rubella Carub.0006s0885 PTHR14155//PTHR14155:SF94 - RING FINGER DOMAIN-CONTAINING // RING-H2 FINGER PROTEIN ATL33-RELATED scaffold_6 + View
Cucumis sativus L. CsaV3_2G029930 RING-H2 finger protein ATL54-like chr2 + View
Cucumis sativus L. CsaV3_6G045220 RING-H2 finger protein chr6 - View
Davidia involucrata Dinv08872 GWHABJS00000021 - View
Davidia involucrata Dinv24165 GWHABJS00000005 - View
Davidia involucrata Dinv44812 GWHABJS00000002 + View
Davidia involucrata Dinv13240 GWHABJS00000014 - View
Durio zibethinus Duzib093G1162 NW_019167937.1 + View
Durio zibethinus Duzib041G0657 NW_019167826.1 - View
Durio zibethinus Duzib132G0563 NW_019167915.1 - View
Durio zibethinus Duzib147G0707 NW_019168470.1 + View
Durio zibethinus Duzib187G0211 NW_019167860.1 + View
Eucalyptus grandis Eucgr.B00047 Chr06 - View
Eucalyptus grandis Eucgr.F00383 Chr06 - View
Eucalyptus grandis Eucgr.H04739 Chr08 - View
Erythranthe guttata Migut.L00164 scaffold_12 + View
Erythranthe guttata Migut.B00576 scaffold_2 - View
Eutrema salsugineum Thhalv10015812m.g PTHR14155:SF94 - RING-H2 FINGER PROTEIN ATL33-RELATED scaffold_2 + View
Fragaria x ananassa FAN23G1114 PTHR14155:SF94 - RING-H2 FINGER PROTEIN ATL33-RELATED Fvb1-3 - View
Fragaria x ananassa FAN28G1256 PTHR14155//PTHR14155:SF94 - RING FINGER DOMAIN-CONTAINING // RING-H2 FINGER PROTEIN ATL33-RELATED Fvb1-1 + View
Fragaria x ananassa FAN19G0666 PTHR14155//PTHR14155:SF101 - RING FINGER DOMAIN-CONTAINING // SUBFAMILY NOT NAMED Fvb1-4 - View
Fragaria x ananassa FAN04G3046 PTHR14155//PTHR14155:SF174 - RING FINGER DOMAIN-CONTAINING // SUBFAMILY NOT NAMED Fvb5-4 - View
Fragaria x ananassa FAN26G2743 PTHR14155//PTHR14155:SF94 - RING FINGER DOMAIN-CONTAINING // RING-H2 FINGER PROTEIN ATL33-RELATED Fvb1-2 - View
Fragaria x ananassa FAN13G1247 PTHR14155//PTHR14155:SF174 - RING FINGER DOMAIN-CONTAINING // SUBFAMILY NOT NAMED Fvb5-2 - View
Fragaria vesca FvH4_1g20164 PTHR14155//PTHR14155:SF101 - RING FINGER DOMAIN-CONTAINING // SUBFAMILY NOT NAMED Fvb1 - View
Gossypium hirsutum Gohir.A05G222900 PTHR14155//PTHR14155:SF174 - RING FINGER DOMAIN-CONTAINING // SUBFAMILY NOT NAMED A05 - View
Gossypium hirsutum Gohir.D05G225600 PTHR14155//PTHR14155:SF174 - RING FINGER DOMAIN-CONTAINING // SUBFAMILY NOT NAMED D05 - View
Gossypium hirsutum Gohir.A12G084000 PTHR14155//PTHR14155:SF94 - RING FINGER DOMAIN-CONTAINING // RING-H2 FINGER PROTEIN ATL33-RELATED A12 - View
Gossypium hirsutum Gohir.D12G081900 PTHR14155//PTHR14155:SF94 - RING FINGER DOMAIN-CONTAINING // RING-H2 FINGER PROTEIN ATL33-RELATED D12 + View
Glycine max Glyma.11G242500 PTHR14155//PTHR14155:SF87 - RING FINGER DOMAIN-CONTAINING // SUBFAMILY NOT NAMED Gm11 + View
Glycine max Glyma.14G177900 PTHR14155//PTHR14155:SF174 - RING FINGER DOMAIN-CONTAINING // SUBFAMILY NOT NAMED Gm14 + View
Glycine max Glyma.15G056000 PTHR14155//PTHR14155:SF101 - RING FINGER DOMAIN-CONTAINING // SUBFAMILY NOT NAMED Gm15 + View
Glycine max Glyma.05G175400 PTHR14155//PTHR14155:SF94 - RING FINGER DOMAIN-CONTAINING // RING-H2 FINGER PROTEIN ATL33-RELATED Gm05 - View
Glycine max Glyma.18G014500 PTHR14155//PTHR14155:SF87 - RING FINGER DOMAIN-CONTAINING // SUBFAMILY NOT NAMED Gm18 - View
Glycine max Glyma.04G091400 PTHR14155:SF78 - RING-H2 FINGER PROTEIN ATL43 Gm04 - View
Glycine max Glyma.02G210400 PTHR14155//PTHR14155:SF174 - RING FINGER DOMAIN-CONTAINING // SUBFAMILY NOT NAMED Gm02 + View
Gossypium raimondii Gorai.009G233100 Chr09 - View
Gossypium raimondii Gorai.008G091200 Chr08 + View
Lupinus albus Lalb_Chr11g0065031 PTHR14155//PTHR14155:SF78 - RING FINGER DOMAIN-CONTAINING // RING-H2 FINGER PROTEIN ATL43 Lalb_Chr11 - View
Lupinus albus Lalb_Chr07g0185351 PTHR14155//PTHR14155:SF94 - RING FINGER DOMAIN-CONTAINING // RING-H2 FINGER PROTEIN ATL33-RELATED Lalb_Chr07 + View
Lupinus albus Lalb_Chr17g0344321 PTHR14155//PTHR14155:SF174 - RING FINGER DOMAIN-CONTAINING // SUBFAMILY NOT NAMED Lalb_Chr17 + View
Lotus japonicus Lj1g0000826 PTHR14155//PTHR14155:SF174 - RING FINGER DOMAIN-CONTAINING // SUBFAMILY NOT NAMED chr1 + View
Lotus japonicus Lj4g0012708 PTHR14155:SF94 - RING-H2 FINGER PROTEIN ATL33-RELATED chr4 + View
Lotus japonicus Lj4g0014527 PTHR14155//PTHR14155:SF101 - RING FINGER DOMAIN-CONTAINING // SUBFAMILY NOT NAMED chr4 - View
Lonicera japonica Lj4A729T42 GWHAAZE00000004 + View
Lonicera japonica Lj4P279T8 GWHAAZE00000004 - View
Lonicera japonica Lj5P233T15 GWHAAZE00000005 - View
Lactuca sativa Lsat_1_v5_gn_1_2761 PTHR14155//PTHR14155:SF174 - RING FINGER DOMAIN-CONTAINING // SUBFAMILY NOT NAMED Lsat_1_v8_lg_1 - View
Lactuca sativa Lsat_1_v5_gn_9_73540 Lsat_1_v8_lg_9 + View
Magnolia biondii MBI02_g20472_MAGBIO AED:0.22 Chr02 + View
Magnolia biondii MBI06_g03313_MAGBIO AED:0.03 Chr06 + View
Malus domestica MD15G1377700 RING/U-box superfamily protein Chr15 + View
Malus domestica MD15G1317400 RING/U-box superfamily protein Chr15 - View
Malus domestica MD01G1036900 RING/U-box superfamily protein Chr01 + View
Malus domestica MD08G1190400 RING/U-box superfamily protein Chr08 + View
Manihot esculenta Manes.10G103400 Chromosome10 - View
Manihot esculenta Manes.02G148600 Chromosome02 - View
Manihot esculenta Manes.12G129600 Chromosome12 - View
Manihot esculenta Manes.13G097400 Chromosome13 + View
Manihot esculenta Manes.07G037700 Chromosome07 + View
Medicago truncatula Medtr2g009310 RING-H2 zinc finger protein chr2 + View
Medicago truncatula Medtr8g089880 zinc finger, C3HC4 type (RING finger) protein chr8 - View
Nelumbo nucifera Nn5g29979 chr5 - View
Nelumbo nucifera Nn1g05473 chr1 + View
Nicotiana tabacum Nitab4.5_0000241g0150 Zinc finger, RING-type, Zinc finger, RING/FYVE/PHD-type Nitab4.5_0000241 - View
Olea europaea Oeu032370.1 chr20 + View
Olea europaea Oeu000876.1 chr10 + View
Oryza sativa ssp. japonica Os09g0468800 Similar to RING-H2 finger protein ATL5F. chr09 - View
Petunia axillaris Peaxi162Scf00299g00919 RING/U-box superfamily protein Peaxi162Scf00299 - View
Petunia axillaris Peaxi162Scf00569g00032 RING/U-box superfamily protein Peaxi162Scf00569 - View
Petunia axillaris Peaxi162Scf00237g00125 RING/U-box superfamily protein Peaxi162Scf00237 - View
Punica granatum PGR102G2551 NC_045129.1 - View
Punica granatum PGR031G1317 NC_045127.1 + View
Prunus persica Prupe.6G194300 PTHR14155:SF94 - RING-H2 FINGER PROTEIN ATL33-RELATED Pp06 + View
Prunus persica Prupe.1G524400 PTHR14155//PTHR14155:SF174 - RING FINGER DOMAIN-CONTAINING // SUBFAMILY NOT NAMED Pp01 + View
Prunus persica Prupe.8G066400 Pp08 + View
Pisum sativum Psat7g057920 Ring finger domain chr7LG7 + View
Populus trichocarpa Potri.002G101800 PTHR14155//PTHR14155:SF174 - RING FINGER DOMAIN-CONTAINING // SUBFAMILY NOT NAMED Chr02 + View
Populus trichocarpa Potri.017G049300 PTHR14155//PTHR14155:SF101 - RING FINGER DOMAIN-CONTAINING // SUBFAMILY NOT NAMED Chr17 - View
Populus trichocarpa Potri.005G071300 PTHR14155//PTHR14155:SF94 - RING FINGER DOMAIN-CONTAINING // RING-H2 FINGER PROTEIN ATL33-RELATED Chr05 - View
Populus trichocarpa Potri.007G097500 PTHR14155//PTHR14155:SF94 - RING FINGER DOMAIN-CONTAINING // RING-H2 FINGER PROTEIN ATL33-RELATED Chr07 + View
Phaseolus vulgaris Phvul.001G254300 Chr01 + View
Phaseolus vulgaris Phvul.008G177400 PTHR14155//PTHR14155:SF174 - RING FINGER DOMAIN-CONTAINING // SUBFAMILY NOT NAMED Chr08 + View
Phaseolus vulgaris Phvul.002G260500 PTHR14155:SF94 - RING-H2 FINGER PROTEIN ATL33-RELATED Chr02 - View
Quercus lobata QL11p023242 11 + View
Quercus lobata QL06p047938 6 - View
Rosa chinensis RcHm_v2.0_Chr2g0112241 RcHm_v2.0_Chr2 - View
Rhododendron simsii Rhsim06G0076900 chr06 - View
Rhododendron simsii Rhsim10G0169000 chr10 + View
Striga asiatica SGA_v2.0_scaffold108G30900 scaffold108 + View
Striga asiatica SGA_v2.0_scaffold335G49093 scaffold335 - View
Striga asiatica SGA_v2.0_scaffold83G26340 scaffold83 + View
Salix brachista Sabra02G0079800 GWHAAZH00000002 + View
Salix brachista Sabra05G0058300 GWHAAZH00000005 - View
Salix brachista Sabra17G0036500 GWHAAZH00000017 - View
Salix brachista Sabra07G0080800 GWHAAZH00000007 + View
Simmondsia chinensis Sc23g0000470 GWHAASQ00000023 + View
Simmondsia chinensis Sc16g0000330 GWHAASQ00000016 + View
Sechium edule Sed0004276 LG04 + View
Sechium edule Sed0012639 LG10 - View
Sechium edule Sed0020452 LG14 + View
Schrenkiella parvula Sp6g33070 PTHR14155:SF94 - RING-H2 FINGER PROTEIN ATL33-RELATED ch6-6 - View
Solanum pennellii Sopen04g029750 RING/U-box superfamily protein | FUNCTIONS IN: zinc ion binding | EXPRESSED IN: inflorescence meristem, root, flower | EXPRESSED DURING: 4 anthesis, petal differentiation and expansion stage | CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type , Zinc finger, C3HC4 RING-type | BEST Arabidopsis thaliana protein match is: RING/U-box superfamily protein Spenn-ch04 + View
Solanum pennellii Sopen04g006320 RING/U-box superfamily protein | FUNCTIONS IN: zinc ion binding | EXPRESSED IN: inflorescence meristem, root, flower | EXPRESSED DURING: 4 anthesis, petal differentiation and expansion stage | CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type , Zinc finger, C3HC4 RING-type | BEST Arabidopsis thaliana protein match is: RING/U-box superfamily protein Spenn-ch04 + View
Solanum pennellii Sopen11g005110 RING/U-box superfamily protein | FUNCTIONS IN: zinc ion binding | INVOLVED IN: biological_process unknown | LOCATED IN: plasma membrane | CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type , Zinc finger, C3HC4 RING-type | BEST Arabidopsis thaliana protein match is: RING/U-box superfamily protein Spenn-ch11 + View
Solanum pennellii Sopen01g048070 RING/U-box superfamily protein | FUNCTIONS IN: zinc ion binding | EXPRESSED IN: 19 plant structures | EXPRESSED DURING: 11 growth stages | CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type , Zinc finger, C3HC4 RING-type | BEST Arabidopsis thaliana protein match is: RING/U-box superfamily protein Spenn-ch01 + View
Solanum tuberosum PGSC0003DMG400016217 Ring finger protein ST4.03ch11 - View
Solanum tuberosum PGSC0003DMG400023634 Ring finger protein ST4.03ch04 + View
Solanum tuberosum PGSC0003DMG400017761 Ring finger protein ST4.03ch12 + View
Solanum tuberosum PGSC0003DMG400030821 Ring finger protein ST4.03ch04 + View
Solanum tuberosum PGSC0003DMG400012570 Ring finger protein ST4.03ch01 + View
Trochodendron aralioides TAR376G0764 group14 + View
Trochodendron aralioides TAR381G1377 group11 - View
Trochodendron aralioides TAR628G0774 group5 + View
Trochodendron aralioides TAR625G0609 group4 + View
Theobroma cacao Thecc.01G094900 RING/U-box superfamily protein Chromosome_1 - View
Theobroma cacao Thecc.02G133000 RING/U-box superfamily protein Chromosome_2 - View
Tarenaya hassleriana THA.LOC104798800 E3 ubiquitin-protein ligase RING1 NW_010960188.1 - View
Trifolium pratense TPR.G6239 Tp57577_TGAC_v2_LG3 - View
Tripterygium wilfordii TWI74G1689 NC_052234.1 - View
Tripterygium wilfordii TWI56G0488 NC_052242.1 - View
Tripterygium wilfordii TWI53G0251 NC_052244.1 + View
Tripterygium wilfordii TWI12G1335 NC_052243.1 + View
Vigna mungo VMungo0251G2524 CM024069.1 - View
Vigna mungo VMungo1383G2499 CM024070.1 + View
Vitis vinifera GSVIVG01009096001 chr18 + View
Zea mays Zm00001eb315620 Zm00001e034423 RING-H2 finger protein ATL5F 7 - View