Paralogs (intra-species colinear regions)

Gene id Description Chromosome Strand Multiplicon
SGA_v2.0_scaffold80G25861 scaffold80 - View

Orthologs (inter-species colinear regions)

Organism Gene id Description Chromosome Strand Multiplicon
Aethionema arabicum Aa31LG6G16500 LG-6 + View
Acer truncatum Atru.chr5.3282 chr5 + View
Actinidia chinensis Actinidia17437 Lachesis_group11 + View
Actinidia chinensis Actinidia28707 Lachesis_group8 - View
Arabidopsis lyrata AL7G10570 scaffold_7 - View
Avicennia marina MSTRG.5443 ScioBoG_102838_HRSCAF_103081 + View
Amaranthus hybridus Ah.01g022780 Cold shock protein 1 (AtCSP1) (Cold shock domain-containing protein 1) AmaHy_arrow1_Scaffold_1 + View
Amaranthus hybridus Ah.01g008750 Cold shock domain-containing protein 4 (AtCSP4) (Glycine-rich protein 2b) (AtGRP2b) AmaHy_arrow1_Scaffold_1 - View
Arachis hypogaea arahy.Tifrunner.gnm1.ann1.LSB155 PF00098//PF00313 - Zinc knuckle (zf-CCHC) // 'Cold-shock' DNA-binding domain (CSD) arahy.Tifrunner.gnm1.Arahy.13 - View
Arachis hypogaea arahy.Tifrunner.gnm1.ann1.LP1JBF PF00098//PF00313 - Zinc knuckle (zf-CCHC) // 'Cold-shock' DNA-binding domain (CSD) arahy.Tifrunner.gnm1.Arahy.03 + View
Arabidopsis thaliana AT4G38680 glycine rich protein 2 Encodes a glycine-rich protein that binds nucleic acids and promotes DNA melting. Its transcript and protein levels are up-regulated in response to cold treatment with protein levels peaking earlier in shoots (~10-14 days) than in roots (~21 days). It is normally expressed in meristematic regions and developing tissues where cell division occurs. RNAi and antisense lines with lower levels of CSP2/GRP2 transcripts flower earlier than wild type plants and have some defects in anther and seed development. glycine rich protein 2 (GRP2)%3B FUNCTIONS IN: double-stranded DNA binding%2C mRNA binding%2C single-stranded DNA binding%2C nucleic acid binding%3B INVOLVED IN: stamen development%2C vegetative to reproductive phase transition of meristem%2C response to cold%2C seed development%2C DNA duplex unwinding%3B LOCATED IN: nucleolus%2C nucleus%2C plasma membrane%2C cytoplasm%3B EXPRESSED IN: 37 plant structures%3B EXPRESSED DURING: 14 growth stages%3B CONTAINS InterPro DOMAIN/s: Nucleic acid-binding%2C OB-fold-like (InterPro:IPR016027)%2C Nucleic acid-binding%2C OB-fold (InterPro:IPR012340)%2C Cold shock protein (InterPro:IPR011129)%2C Cold-shock conserved site (InterPro:IPR019844)%2C Zinc finger%2C CCHC-type (InterPro:IPR001878)%2C Cold-shock protein%2C DNA-binding (InterPro:IPR002059)%3B BEST Arabidopsis thaliana protein match is: glycine-rich protein 2B (TAIR:AT2G21060.1)%3B Has 150401 Blast hits to 55289 proteins in 3379 species: Archae - 285%3B Bacteria - 51625%3B Metazoa - 48133%3B Fungi - 9113%3B Plants - 13783%3B Viruses - 1771%3B Other Eukaryotes - 25691 (source: NCBI BLink). Chr4 - View
Beta vulgaris EL10Ac9g21411 PF00313 - 'Cold-shock' DNA-binding domain (CSD) Chr9_EL10_PGA_scaffold8 - View
Camellia sinensis var. sinensis CSS0028878 Glycine-rich protein 2b [Morus notabilis] Chr6 - View
Camellia sinensis var. sinensis CSS0033859 Glycine-rich protein 2b [Morus notabilis] Chr3 - View
Capsicum annuum CAN.G588.45 PGAv.1.6.scaffold588 - View
Cicer arietinum L. Ca_19047_v3 Ca_LG6_v3 + View
Corylus avellana Haze_02169 Similar to CSP4: Cold shock domain-containing protein 4 (Arabidopsis thaliana OX%3D3702) 1 - View
Coffea canephora Cc02_g16400 Glycine-rich protein 2b chr2 - View
Carpinus fangiana Cfa005217 Cfa02 + View
Cardamine hirsuta CARHR294400 Cold shock protein, putative scaffold1271 - View
Carya illinoinensis CiPaw.06G123800 PF00098//PF00313 - Zinc knuckle (zf-CCHC) // 'Cold-shock' DNA-binding domain (CSD) Chr06 - View
Carya illinoinensis CiPaw.05G079500 PF00098//PF00313 - Zinc knuckle (zf-CCHC) // 'Cold-shock' DNA-binding domain (CSD) Chr05 + View
Citrullus lanatus ClCG02G004220 glycine-rich protein 2B LENGTH=201 CG_Chr02 - View
Cucumis melo MELO3C013368.2 Cold shock protein, putative chr01 - View
Cucumis melo MELO3C013764.2 cold shock domain-containing protein 3 chr06 - View
Carica papaya Cpa.g.sc37.170 supercontig_37 - View
Chenopodium quinoa AUR62013061 CSP4: Cold shock domain-containing protein 4 C_Quinoa_Scaffold_1040 - View
Chenopodium quinoa AUR62010069 GRP-2: Glycine-rich protein 2 C_Quinoa_Scaffold_1257 - View
Capsella rubella Carub.0007s0055 PTHR11544 - COLD SHOCK DOMAIN CONTAINING PROTEINS scaffold_7 - View
Cucumis sativus L. CsaV3_7G000900 Cold shock protein chr7 + View
Cucumis sativus L. CsaV3_3G000760 Cold shock protein chr3 - View
Davidia involucrata Dinv33640 GWHABJS00000012 + View
Davidia involucrata Dinv41961 GWHABJS00000002 + View
Davidia involucrata Dinv04947 GWHABJS00000005 - View
Durio zibethinus Duzib132G0788 NW_019167915.1 - View
Erigeron canadensis ECA233G0819 Conyza_canadensis_scaffold:1 - View
Erigeron canadensis ECA232G1335 Conyza_canadensis_scaffold:2 + View
Eucalyptus grandis Eucgr.I01395 Chr09 + View
Erythranthe guttata Migut.N01302 scaffold_14 + View
Fragaria x ananassa FAN28G0124 K09250 - cellular nucleic acid-binding protein (CNBP) Fvb1-1 + View
Fragaria x ananassa FAN15G2017 PF00098//PF00313 - Zinc knuckle (zf-CCHC) // 'Cold-shock' DNA-binding domain (CSD) Fvb2-4 - View
Fragaria x ananassa FAN20G2183 PF00098//PF00313 - Zinc knuckle (zf-CCHC) // 'Cold-shock' DNA-binding domain (CSD) Fvb2-3 + View
Fragaria x ananassa FAN27G2057 PF00098//PF00313 - Zinc knuckle (zf-CCHC) // 'Cold-shock' DNA-binding domain (CSD) Fvb2-1 - View
Fragaria x ananassa FAN24G0278 PF00098//PF00313 - Zinc knuckle (zf-CCHC) // 'Cold-shock' DNA-binding domain (CSD) Fvb2-2 + View
Fragaria vesca FvH4_2g01580 PF00098//PF00313 - Zinc knuckle (zf-CCHC) // 'Cold-shock' DNA-binding domain (CSD) Fvb2 - View
Gossypium hirsutum Gohir.D02G225400 PF00098//PF00313 - Zinc knuckle (zf-CCHC) // 'Cold-shock' DNA-binding domain (CSD) D02 + View
Gossypium hirsutum Gohir.A11G174600 K09250 - cellular nucleic acid-binding protein (CNBP) A11 - View
Gossypium hirsutum Gohir.D01G156900 PF00098//PF00313 - Zinc knuckle (zf-CCHC) // 'Cold-shock' DNA-binding domain (CSD) D01 + View
Gossypium hirsutum Gohir.D11G182000 PF00098//PF00313 - Zinc knuckle (zf-CCHC) // 'Cold-shock' DNA-binding domain (CSD) D11 - View
Gossypium hirsutum Gohir.A01G003100 PF00098//PF00313 - Zinc knuckle (zf-CCHC) // 'Cold-shock' DNA-binding domain (CSD) A01 - View
Gossypium hirsutum Gohir.A03G204101 PF00313 - 'Cold-shock' DNA-binding domain (CSD) A03 + View
Gossypium hirsutum Gohir.A01G165500 PF00098//PF00313 - Zinc knuckle (zf-CCHC) // 'Cold-shock' DNA-binding domain (CSD) A01 + View
Glycine max Glyma.04G004900 PTHR11544 - COLD SHOCK DOMAIN CONTAINING PROTEINS Gm04 + View
Glycine max Glyma.11G105900 PTHR11544 - COLD SHOCK DOMAIN CONTAINING PROTEINS Gm11 + View
Glycine max Glyma.12G030800 PTHR11544 - COLD SHOCK DOMAIN CONTAINING PROTEINS Gm12 + View
Gossypium raimondii Gorai.005G253200 Chr05 + View
Gossypium raimondii Gorai.002G195000 Chr02 + View
Gossypium raimondii Gorai.007G193700 Chr07 - View
Gossypium raimondii Gorai.002G003500 Chr02 - View
Lupinus albus Lalb_Chr03g0025031 PF00098//PF00313 - Zinc knuckle (zf-CCHC) // 'Cold-shock' DNA-binding domain (CSD) Lalb_Chr03 + View
Lupinus albus Lalb_Chr19g0139191 PF00313 - 'Cold-shock' DNA-binding domain (CSD) Lalb_Chr19 - View
Lupinus albus Lalb_Chr01g0001721 PF00098//PF00313 - Zinc knuckle (zf-CCHC) // 'Cold-shock' DNA-binding domain (CSD) Lalb_Chr01 + View
Lotus japonicus Lj3g0005027 PF00098//PF00313 - Zinc knuckle (zf-CCHC) // 'Cold-shock' DNA-binding domain (CSD) chr3 + View
Lactuca sativa Lsat_1_v5_gn_3_46880 KOG3070 - Predicted RNA-binding protein containing PIN domain and invovled in translation or RNA processing Lsat_1_v8_lg_3 + View
Malus domestica MD10G1121500 glycine-rich protein 2B Chr10 + View
Manihot esculenta Manes.11G083125 Chromosome11 + View
Manihot esculenta Manes.04G076800 Chromosome04 - View
Nicotiana tabacum Nitab4.5_0001889g0130 Zinc finger, CCHC-type, Cold-shock conserved site, Cold-shock protein, DNA-binding, Nucleic acid-binding, OB-fold, Cold shock protein Nitab4.5_0001889 + View
Olea europaea Oeu006674.1 chr3 + View
Petunia axillaris Peaxi162Scf00362g00091 cold shock domain protein 3 Peaxi162Scf00362 + View
Petunia axillaris Peaxi162Scf00042g00273 glycine-rich protein 2B Peaxi162Scf00042 + View
Punica granatum PGR042G3941 NC_045130.1 - View
Punica granatum PGR142G2913 NC_045128.1 - View
Prunus persica Prupe.8G163000 KOG3070 - Predicted RNA-binding protein containing PIN domain and invovled in translation or RNA processing Pp08 + View
Populus trichocarpa Potri.009G132000 PF00098//PF00313 - Zinc knuckle (zf-CCHC) // 'Cold-shock' DNA-binding domain (CSD) Chr09 + View
Populus trichocarpa Potri.004G172600 KOG3070 - Predicted RNA-binding protein containing PIN domain and invovled in translation or RNA processing Chr04 + View
Phaseolus vulgaris Phvul.011G033900 PTHR11544 - COLD SHOCK DOMAIN CONTAINING PROTEINS Chr11 + View
Quercus lobata QL11p049250 11 + View
Rosa chinensis RcHm_v2.0_Chr2g0099321 RcHm_v2.0_Chr2 - View
Rhododendron simsii Rhsim11G0190900 chr11 + View
Rhododendron simsii Rhsim08G0033300 chr08 - View
Rhododendron simsii Rhsim05G0062100 chr05 - View
Salvia bowleyana SalBow1G7349 GWHASIU00000001 - View
Salix brachista Sabra09G0102400 GWHAAZH00000009 + View
Salix brachista Sabra04G0114700 GWHAAZH00000004 + View
Sechium edule Sed0013765 LG04 - View
Solanum lycopersicum Solyc01g111280.3 Cold-shock protein (AHRD V3.3 *-* A0A200RAC1_9MAGN) SL4.0ch01 - View
Solanum pennellii Sopen01g053350 glycine-rich protein (AtGRP2b) | glycine-rich protein 2B (GRP2B) | FUNCTIONS IN: DNA binding, zinc ion binding, nucleic acid binding | INVOLVED IN: regulation of transcription, DNA-dependent | LOCATED IN: cellular_component unknown | EXPRESSED IN: 22 plant structures | EXPRESSED DURING: 13 growth stages | CONTAINS InterPro DOMAIN/s: Nucleic acid-binding, OB-fold , Cold-shock conserved site , Zinc finger, CCHC retroviral-type , Nucleic acid-binding, OB-fold-like , Cold shock protein , Zinc finger, CCHC-type , Cold-shock protein, DNA-binding | BEST Arabidopsis thaliana protein match is: glycine rich protein 2 Spenn-ch01 - View
Solanum tuberosum PGSC0003DMG400023206 Cold shock domain protein 2 ST4.03ch10 - View
Solanum tuberosum PGSC0003DMG400001591 Glycine-rich protein 2 ST4.03ch01 - View
Trochodendron aralioides TAR628G0853 group5 + View
Trochodendron aralioides TAR376G0860 group14 + View
Trochodendron aralioides TAR381G0031 group11 - View
Theobroma cacao Thecc.02G063600 Chromosome_2 - View
Theobroma cacao Thecc.01G017400 Cold shock domain protein 1 Chromosome_1 - View
Tarenaya hassleriana THA.LOC104807821 cold shock protein 2 NW_010963495.1 - View
Tarenaya hassleriana THA.LOC104804094 cold shock protein 2 NW_010971389.1 - View
Tarenaya hassleriana THA.LOC104820188 cold shock domain-containing protein 3-like NW_010966177.1 - View
Tripterygium wilfordii TWI79G0078 NC_052238.1 - View
Tripterygium wilfordii TWI31G1215 NC_052233.1 - View
Vigna mungo VMungo1309G0193 CM024072.1 - View
Vitis vinifera GSVIVG01024055001 chr3 + View
Vitis vinifera GSVIVG01018771001 chr4 + View