Paralogs (intra-species colinear regions)

Gene id Description Chromosome Strand Multiplicon
Potri.012G143500 PTHR11165//PTHR11165:SF61 - SKP1 // SUBFAMILY NOT NAMED Chr12 - View
Potri.002G160600 PTHR11165:SF62 - SKP1-LIKE PROTEIN 20-RELATED Chr02 - View

Orthologs (inter-species colinear regions)

Organism Gene id Description Chromosome Strand Multiplicon
Aethionema arabicum Aa31LG1G27360 LG-1 - View
Aethionema arabicum Aa31LG10G15540 LG-10 + View
Acer truncatum Atru.chr1.416 chr1 + View
Acer truncatum Atru.chr5.504 chr5 - View
Actinidia chinensis Actinidia34133 Lachesis_group3 - View
Actinidia chinensis Actinidia10036 Lachesis_group0 + View
Actinidia chinensis Actinidia20898 Lachesis_group6 + View
Arabidopsis lyrata AL4G45170 scaffold_4 - View
Arabidopsis lyrata AL5G43710 scaffold_5 - View
Avicennia marina MSTRG.28224 ScioBoG_94932_HRSCAF_95134 - View
Avicennia marina MSTRG.20839 ScioBoG_26180_HRSCAF_26306 - View
Aquilegia oxysepala Aqoxy7G00293 CHR07 + View
Arachis hypogaea arahy.Tifrunner.gnm1.ann1.LDA2L2 PTHR11165//PTHR11165:SF61 - SKP1 // SUBFAMILY NOT NAMED arahy.Tifrunner.gnm1.Arahy.02 - View
Arachis hypogaea arahy.Tifrunner.gnm1.ann1.JHU363 PTHR11165//PTHR11165:SF61 - SKP1 // SUBFAMILY NOT NAMED arahy.Tifrunner.gnm1.Arahy.14 + View
Arachis hypogaea arahy.Tifrunner.gnm1.ann1.P9SQBF PTHR11165//PTHR11165:SF61 - SKP1 // SUBFAMILY NOT NAMED arahy.Tifrunner.gnm1.Arahy.12 - View
Arachis hypogaea arahy.Tifrunner.gnm1.ann1.T02BE4 PTHR11165//PTHR11165:SF61 - SKP1 // SUBFAMILY NOT NAMED arahy.Tifrunner.gnm1.Arahy.04 + View
Arachis hypogaea arahy.Tifrunner.gnm1.ann1.8QB15U PTHR11165:SF62 - SKP1-LIKE PROTEIN 20-RELATED arahy.Tifrunner.gnm1.Arahy.05 - View
Arabidopsis thaliana AT3G61415 SKP1-like 21 SKP1-like 21 (SK21)%3B FUNCTIONS IN: ubiquitin-protein ligase activity%3B INVOLVED IN: ubiquitin-dependent protein catabolic process%3B LOCATED IN: SCF ubiquitin ligase complex%3B EXPRESSED IN: stem%2C fruit%2C root%2C inflorescence%2C leaf%3B EXPRESSED DURING: seedling growth%3B CONTAINS InterPro DOMAIN/s: SKP1 component%2C dimerisation (InterPro:IPR016072)%2C SKP1 component (InterPro:IPR001232)%2C BTB/POZ fold (InterPro:IPR011333)%2C SKP1 component%2C POZ (InterPro:IPR016073)%3B BEST Arabidopsis thaliana protein match is: SKP1-like 20 (TAIR:AT2G45950.1)%3B Has 1341 Blast hits to 1337 proteins in 268 species: Archae - 0%3B Bacteria - 12%3B Metazoa - 524%3B Fungi - 168%3B Plants - 472%3B Viruses - 11%3B Other Eukaryotes - 154 (source: NCBI BLink). Chr3 - View
Arabidopsis thaliana AT2G45950 SKP1-like 20 SKP1-like 20 (SK20)%3B FUNCTIONS IN: ubiquitin-protein ligase activity%3B INVOLVED IN: ubiquitin-dependent protein catabolic process%3B LOCATED IN: SCF ubiquitin ligase complex%3B EXPRESSED IN: 7 plant structures%3B EXPRESSED DURING: L mature pollen stage%2C M germinated pollen stage%2C seedling growth%3B CONTAINS InterPro DOMAIN/s: SKP1 component%2C dimerisation (InterPro:IPR016072)%2C SKP1 component (InterPro:IPR001232)%2C BTB/POZ fold (InterPro:IPR011333)%3B BEST Arabidopsis thaliana protein match is: SKP1-like 21 (TAIR:AT3G61415.1)%3B Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798%3B Bacteria - 22429%3B Metazoa - 974%3B Fungi - 991%3B Plants - 531%3B Viruses - 0%3B Other Eukaryotes - 9610 (source: NCBI BLink). Chr2 - View
Amborella trichopoda ATR0680G050 AmTr_v1.0_scaffold00009 + View
Brassica carinata BcaC02g12165 ChrC02 + View
Brassica carinata BcaC07g40638 ChrC07 - View
Brassica napus C08p36270 C08 - View
Brassica napus C04p06840 C04 - View
Brassica napus A05p05900 A05 - View
Brassica napus A09p53460 A09 - View
Brassica oleracea BolC4t22306H C4 - View
Brassica oleracea BolC8t51209H C8 - View
Brassica rapa BraA05t19554Z A05 - View
Brassica rapa BraA09t40771Z A09 - View
Beta vulgaris EL10Ac1g00409 PTHR11165//PTHR11165:SF62 - SKP1 // SKP1-LIKE PROTEIN 20-RELATED Chr1_EL10_PGA_scaffold3 - View
Beta vulgaris EL10Ac3g05597 PTHR11165//PTHR11165:SF61 - SKP1 // SUBFAMILY NOT NAMED Chr3_EL10_PGA_scaffold7 + View
Camellia sinensis var. sinensis CSS0027799 SKP1-like protein 21 isoform 3 [Theobroma cacao] Chr6 + View
Cicer arietinum L. Ca_07926_v3 Ca_LG3_v3 - View
Cicer arietinum L. Ca_23628_v3 Ca_LG7_v3 + View
Corylus avellana Haze_00016 Similar to ASK21: SKP1-like protein 21 (Arabidopsis thaliana OX%3D3702) 1 - View
Corylus avellana Haze_15519 Similar to ASK21: SKP1-like protein 21 (Arabidopsis thaliana OX%3D3702) 11 - View
Coffea canephora Cc02_g02670 SKP1-like protein 21 chr2 + View
Coffea canephora Cc02_g38110 SKP1-like protein 21 chr2 - View
Citrus clementina Ciclev10005270m.g scaffold_9 - View
Citrus clementina Ciclev10020595m.g scaffold_3 + View
Ceratophyllum demersum CDE04G2626 2 - View
Carpinus fangiana Cfa003912 Cfa01 + View
Cardamine hirsuta CARHR141220 SKP1-like 20 Chr4 - View
Cardamine hirsuta CARHR171760 SKP1-like 21 Chr5 - View
Carya illinoinensis CiPaw.01G062400 PTHR11165//PTHR11165:SF61//PTHR11165:SF62 - SKP1 // SUBFAMILY NOT NAMED // SKP1-LIKE PROTEIN 20-RELATED Chr01 - View
Carya illinoinensis CiPaw.02G031700 PTHR11165//PTHR11165:SF62 - SKP1 // SKP1-LIKE PROTEIN 20-RELATED Chr02 - View
Carica papaya Cpa.g.sc11.11 supercontig_11 - View
Carica papaya Cpa.g.sc107.78 supercontig_107 - View
Chenopodium quinoa AUR62021154 ASK21: SKP1-like protein 21 C_Quinoa_Scaffold_1783 + View
Chenopodium quinoa AUR62004365 ASK21: SKP1-like protein 21 C_Quinoa_Scaffold_4250 + View
Chenopodium quinoa AUR62022574 ASK21: SKP1-like protein 21 C_Quinoa_Scaffold_1870 + View
Capsella rubella Carub.0004s2864 PTHR11165:SF62 - SKP1-LIKE PROTEIN 20-RELATED scaffold_4 - View
Capsella rubella Carub.0005s2811 PTHR11165:SF62 - SKP1-LIKE PROTEIN 20-RELATED scaffold_5 - View
Daucus carota DCAR_006934 hypothetical protein DCARv2_Chr2 - View
Davidia involucrata Dinv35228 GWHABJS00000009 + View
Davidia involucrata Dinv32490 GWHABJS00000020 - View
Davidia involucrata Dinv43822 GWHABJS00000016 - View
Durio zibethinus Duzib138G1934 NW_019167893.1 - View
Durio zibethinus Duzib133G0151 NW_019167938.1 - View
Erigeron canadensis ECA236G0440 Conyza_canadensis_scaffold:3 - View
Erythranthe guttata Migut.N01448 scaffold_14 + View
Erythranthe guttata Migut.B01761 scaffold_2 - View
Eutrema salsugineum Thhalv10001775m.g PTHR11165:SF62 - SKP1-LIKE PROTEIN 20-RELATED scaffold_22 - View
Eutrema salsugineum Thhalv10006063m.g PTHR11165:SF62 - SKP1-LIKE PROTEIN 20-RELATED scaffold_19 + View
Fragaria x ananassa FAN06G3716 PTHR11165//PTHR11165:SF61 - SKP1 // SUBFAMILY NOT NAMED Fvb7-2 - View
Fragaria x ananassa FAN10G0827 PTHR11165//PTHR11165:SF62 - SKP1 // SKP1-LIKE PROTEIN 20-RELATED Fvb7-1 - View
Fragaria x ananassa FAN06G0110 Fvb7-2 - View
Fragaria x ananassa FAN01G1196 PTHR11165:SF62 - SKP1-LIKE PROTEIN 20-RELATED Fvb7-4 + View
Fragaria x ananassa FAN10G0263 KOG0472//KOG1724 - Leucine-rich repeat protein // SCF ubiquitin ligase, Skp1 component Fvb7-1 - View
Fragaria x ananassa FAN10G1975 PTHR11165//PTHR11165:SF62 - SKP1 // SKP1-LIKE PROTEIN 20-RELATED Fvb7-1 - View
Fragaria x ananassa FAN01G3142 PTHR11165:SF62 - SKP1-LIKE PROTEIN 20-RELATED Fvb7-4 + View
Fragaria x ananassa FAN06G4076 PTHR11165//PTHR11165:SF62 - SKP1 // SKP1-LIKE PROTEIN 20-RELATED Fvb7-2 - View
Fragaria x ananassa FAN03G0326 PTHR11165:SF62 - SKP1-LIKE PROTEIN 20-RELATED Fvb7-3 + View
Fragaria x ananassa FAN03G0533 PTHR11165//PTHR11165:SF62 - SKP1 // SKP1-LIKE PROTEIN 20-RELATED Fvb7-3 + View
Fragaria x ananassa FAN06G4107 PTHR11165//PTHR11165:SF62 - SKP1 // SKP1-LIKE PROTEIN 20-RELATED Fvb7-2 - View
Fragaria x ananassa FAN03G1854 PTHR11165:SF62 - SKP1-LIKE PROTEIN 20-RELATED Fvb7-3 + View
Fragaria x ananassa FAN10G2332 PTHR11165:SF62 - SKP1-LIKE PROTEIN 20-RELATED Fvb7-1 - View
Fragaria vesca FvH4_7g29890 PTHR11165//PTHR11165:SF61//PTHR11165:SF62 - SKP1 // SUBFAMILY NOT NAMED // SKP1-LIKE PROTEIN 20-RELATED Fvb7 - View
Fragaria vesca FvH4_7g14420 PTHR11165//PTHR11165:SF62 - SKP1 // SKP1-LIKE PROTEIN 20-RELATED Fvb7 - View
Gossypium hirsutum Gohir.A08G131500 PTHR11165//PTHR11165:SF61 - SKP1 // SUBFAMILY NOT NAMED A08 - View
Gossypium hirsutum Gohir.A11G089200 PTHR11165//PTHR11165:SF62 - SKP1 // SKP1-LIKE PROTEIN 20-RELATED A11 - View
Gossypium hirsutum Gohir.D08G153000 PTHR11165//PTHR11165:SF61//PTHR11165:SF62 - SKP1 // SUBFAMILY NOT NAMED // SKP1-LIKE PROTEIN 20-RELATED D08 - View
Gossypium hirsutum Gohir.D11G093500 PTHR11165//PTHR11165:SF62 - SKP1 // SKP1-LIKE PROTEIN 20-RELATED D11 - View
Glycine max Glyma.03G008500 PTHR11165//PTHR11165:SF61 - SKP1 // SUBFAMILY NOT NAMED Gm03 + View
Glycine max Glyma.07G069800 PTHR11165//PTHR11165:SF61 - SKP1 // SUBFAMILY NOT NAMED Gm07 + View
Glycine max Glyma.09G136000 PTHR11165//PTHR11165:SF62 - SKP1 // SKP1-LIKE PROTEIN 20-RELATED Gm09 + View
Glycine max Glyma.18G233700 PTHR11165//PTHR11165:SF61 - SKP1 // SUBFAMILY NOT NAMED Gm18 - View
Glycine max Glyma.09G258900 PTHR11165//PTHR11165:SF61 - SKP1 // SUBFAMILY NOT NAMED Gm09 + View
Gossypium raimondii Gorai.007G099900 Chr07 - View
Gossypium raimondii Gorai.004G158900 Chr04 - View
Helianthus annuus HanXRQChr04g0121111 Probable SKP1-like 20 HanXRQChr04 - View
Lupinus albus Lalb_Chr17g0339551 PTHR11165//PTHR11165:SF61 - SKP1 // SUBFAMILY NOT NAMED Lalb_Chr17 + View
Lupinus albus Lalb_Chr04g0257001 PTHR11165//PTHR11165:SF61 - SKP1 // SUBFAMILY NOT NAMED Lalb_Chr04 - View
Lupinus albus Lalb_Chr10g0096881 PTHR11165//PTHR11165:SF61 - SKP1 // SUBFAMILY NOT NAMED Lalb_Chr10 + View
Lotus japonicus Lj3g0011404 PTHR11165//PTHR11165:SF61 - SKP1 // SUBFAMILY NOT NAMED chr3 + View
Lotus japonicus Lj1g0004586 PTHR11165//PTHR11165:SF61 - SKP1 // SUBFAMILY NOT NAMED chr1 + View
Lonicera japonica Lj8C21G6 GWHAAZE00000008 + View
Lactuca sativa Lsat_1_v5_gn_7_4761 PTHR11165:SF62 - SKP1-LIKE PROTEIN 20-RELATED Lsat_1_v8_lg_7 + View
Magnolia biondii MBI18_g29421_MAGBIO AED:0.34 Chr18 - View
Malus domestica MD01G1205300 SKP1-like 21 Chr01 - View
Malus domestica MD07G1273900 SKP1-like 21 Chr07 - View
Malus domestica MD01G1062100 SKP1-like 21 Chr01 - View
Manihot esculenta Manes.06G150000 Chromosome06 - View
Manihot esculenta Manes.14G024500 Chromosome14 + View
Medicago truncatula Medtr8g030670 ubiquitin-protein ligase, putative chr8 + View
Medicago truncatula Medtr7g077810 ubiquitin-protein ligase, putative chr7 - View
Nelumbo nucifera Nn6g33404 chr6 + View
Nelumbo nucifera Nn1g01547 chr1 - View
Olea europaea Oeu010617.1 chr3 - View
Prunus persica Prupe.2G171100 Pp02 - View
Prunus persica Prupe.2G297900 Pp02 - View
Pisum sativum Psat3g108080 Skp1 family + dimerisation domain chr3LG5 + View
Pisum sativum Psat4g156040 Skp1 family + dimerisation domain chr4LG4 - View
Papaver somniferum PSO782G2254 NC_039365.1 - View
Phaseolus vulgaris Phvul.008G062000 PTHR11165//PTHR11165:SF61 - SKP1 // SUBFAMILY NOT NAMED Chr08 + View
Phaseolus vulgaris Phvul.010G099600 PTHR11165//PTHR11165:SF61 - SKP1 // SUBFAMILY NOT NAMED Chr10 - View
Phaseolus vulgaris Phvul.004G113200 PTHR11165:SF62 - SKP1-LIKE PROTEIN 20-RELATED Chr04 + View
Quercus lobata QL08p048301 8 + View
Rosa chinensis RcHm_v2.0_Chr1g0377851 RcHm_v2.0_Chr1 - View
Rhododendron simsii Rhsim03G0188300 chr03 - View
Striga asiatica SGA_v2.0_scaffold4G02309 scaffold4 + View
Salvia bowleyana SalBow3G0162 GWHASIU00000006 + View
Salvia bowleyana SalBow5G2881 GWHASIU00000003 - View
Salix brachista Sabra12G0107700 GWHAAZH00000012 - View
Salix brachista Sabra14G0061800 GWHAAZH00000014 - View
Simmondsia chinensis Sc23g0002860 GWHAASQ00000023 - View
Solanum lycopersicum Solyc03g025420.3 SKP1-like protein 21 (AHRD V3.3 *** A0A2G2ZZ74_CAPAN) SL4.0ch03 + View
Schrenkiella parvula Sp4g28020 PTHR11165:SF62 - SKP1-LIKE PROTEIN 20-RELATED ch4-6 - View
Schrenkiella parvula Sp5g01980 PTHR11165:SF62 - SKP1-LIKE PROTEIN 20-RELATED ch5-1 + View
Solanum pennellii Sopen03g004260 SKP1-like 21 (SK21) | FUNCTIONS IN: ubiquitin-protein ligase activity | INVOLVED IN: ubiquitin-dependent protein catabolic process | LOCATED IN: SCF ubiquitin ligase complex | EXPRESSED IN: stem, fruit, root, inflorescence, leaf | EXPRESSED DURING: seedling growth | CONTAINS InterPro DOMAIN/s: SKP1 component, dimerisation , SKP1 component , BTB/POZ fold , SKP1 component, POZ | BEST Arabidopsis thaliana protein match is: SKP1-like 20 Spenn-ch03 + View
Solanum tuberosum PGSC0003DMG400015800 Ubiquitin-protein ligase ST4.03ch03 - View
Trochodendron aralioides TAR375G0720 group15 - View
Trochodendron aralioides TAR374G0481 group12 - View
Theobroma cacao Thecc.01G358300 SKP1-like protein 21 Chromosome_1 + View
Theobroma cacao Thecc.03G180200 SKP1-like protein 21 Chromosome_3 - View
Tripterygium wilfordii TWI59G0468 NC_052248.1 - View
Tripterygium wilfordii TWI14G1018 NC_052249.1 - View
Utricularia gibba unitig_8.g3800 unitig_8 + View
Vigna mungo VMungo0464G1316 CM024077.1 + View
Vigna mungo VMungo0331G1747 CM024078.1 + View
Vitis vinifera GSVIVG01026939001 chr15 + View
Vitis vinifera GSVIVG01028906001 chr16 - View