Paralogs (intra-species colinear regions)

Gene id Description Chromosome Strand Multiplicon
CSS0008853 hypothetical protein EUTSA_v10009970mg, partial [Eutrema salsugineum] Chr1 - View

Orthologs (inter-species colinear regions)

Organism Gene id Description Chromosome Strand Multiplicon
Aethionema arabicum Aa31LG6G12540 LG-6 - View
Aethionema arabicum Aa31LG7G4890 LG-7 + View
Aethionema arabicum Aa31LG8G14860 LG-8 - View
Acer truncatum Atru.chr3.135 chr3 - View
Actinidia chinensis Actinidia17361 Lachesis_group11 + View
Actinidia chinensis Actinidia17056 Lachesis_group28 - View
Arabidopsis lyrata AL3G50530 scaffold_3 - View
Arabidopsis lyrata AL7G15590 scaffold_7 + View
Avicennia marina MSTRG.3629 ScioBoG_102836_HRSCAF_103072 - View
Avicennia marina MSTRG.15599 ScioBoG_19538_HRSCAF_19626 - View
Aquilegia oxysepala Aqoxy6G01624 CHR06 - View
Aquilegia oxysepala Aqoxy5G01012 CHR05 - View
Arachis hypogaea arahy.Tifrunner.gnm1.ann1.3NB7SA PTHR13711//PTHR13711:SF222 - SWI/SNF-RELATED CHROMATIN BINDING PROTEIN // HIGH MOBILITY GROUP B PROTEIN 4-RELATED arahy.Tifrunner.gnm1.Arahy.08 + View
Arachis hypogaea arahy.Tifrunner.gnm1.ann1.JM0DSQ PTHR13711//PTHR13711:SF218 - SWI/SNF-RELATED CHROMATIN BINDING PROTEIN // SUBFAMILY NOT NAMED arahy.Tifrunner.gnm1.Arahy.01 + View
Arachis hypogaea arahy.Tifrunner.gnm1.ann1.E2TLBW PTHR13711:SF223 - HIGH MOBILITY GROUP B PROTEIN 2-RELATED arahy.Tifrunner.gnm1.Arahy.05 - View
Arachis hypogaea arahy.Tifrunner.gnm1.ann1.8F15T7 PTHR13711//PTHR13711:SF218 - SWI/SNF-RELATED CHROMATIN BINDING PROTEIN // SUBFAMILY NOT NAMED arahy.Tifrunner.gnm1.Arahy.20 - View
Arachis hypogaea arahy.Tifrunner.gnm1.ann1.BS74YV PTHR13711//PTHR13711:SF222 - SWI/SNF-RELATED CHROMATIN BINDING PROTEIN // HIGH MOBILITY GROUP B PROTEIN 4-RELATED arahy.Tifrunner.gnm1.Arahy.17 - View
Arachis hypogaea arahy.Tifrunner.gnm1.ann1.H0PYWT PTHR13711:SF223 - HIGH MOBILITY GROUP B PROTEIN 2-RELATED arahy.Tifrunner.gnm1.Arahy.15 - View
Arabidopsis thaliana AT4G35570 high mobility group B5 Encodes a protein belonging to the subgroup of HMGB (high mobility group B) proteins that have a distinctive DNA-binding motif%2C the HMG-box domain. The motif confers non-sequence specific interaction with linear DNA and structure-specific binding to distorted DNA sites. The HMGB proteins are involved in the assembly of nucleoprotein complexes. Cannot be phosphorylated by CK2alpha. high mobility group B5 (HMGB5)%3B CONTAINS InterPro DOMAIN/s: High mobility group%2C superfamily (InterPro:IPR009071)%2C High mobility group%2C HMG1/HMG2 (InterPro:IPR000910)%3B BEST Arabidopsis thaliana protein match is: high mobility group B4 (TAIR:AT2G17560.2)%3B Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 736%3B Fungi - 347%3B Plants - 385%3B Viruses - 0%3B Other Eukaryotes - 339 (source: NCBI BLink). Chr4 - View
Arabidopsis thaliana AT2G17560 high mobility group B4 Encodes a protein belonging to the subgroup of HMGB (high mobility group B) proteins that have a distinctive DNA-binding motif%2C the HMG-box domain. The motif confers non-sequence specific interaction with linear DNA and structure-specific binding to distorted DNA sites. The HMGB proteins are involved in the assembly of nucleoprotein complexes. Can be phosphorylated by CK2alpha. high mobility group B4 (HMGB4)%3B FUNCTIONS IN: chromatin binding%2C structural constituent of chromatin%2C DNA binding%2C sequence-specific DNA binding transcription factor activity%3B INVOLVED IN: chromatin assembly or disassembly%3B LOCATED IN: chromatin%3B EXPRESSED IN: 24 plant structures%3B EXPRESSED DURING: 13 growth stages%3B CONTAINS InterPro DOMAIN/s: High mobility group%2C superfamily (InterPro:IPR009071)%2C High mobility group%2C HMG1/HMG2 (InterPro:IPR000910)%3B BEST Arabidopsis thaliana protein match is: high mobility group B5 (TAIR:AT4G35570.1)%3B Has 4827 Blast hits to 4510 proteins in 564 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 3518%3B Fungi - 343%3B Plants - 550%3B Viruses - 3%3B Other Eukaryotes - 413 (source: NCBI BLink). Chr2 - View
Amborella trichopoda ATR0807G249 AmTr_v1.0_scaffold00044 + View
Brassica carinata BcaNung00581 Contig324 + View
Brassica carinata BcaNung05034 Contig1826 - View
Brassica carinata BcaB03g14305 ChrB03 - View
Brassica carinata BcaB07g32065 ChrB07 + View
Brassica carinata BcaC07g39050 ChrC07 + View
Brassica carinata BcaNung03640 Contig1247 - View
Brassica carinata BcaC06g36290 ChrC06 - View
Brassica carinata BcaB03g16528 ChrB03 - View
Brassica carinata BcaB03g12857 ChrB03 - View
Brassica napus A03p63690 A03 - View
Brassica napus C07p61250 C07 - View
Brassica napus A07p15520 A07 - View
Brassica napus C07p05700 C07 + View
Brassica napus C07p22860 C07 - View
Brassica napus C01p03400 C01 + View
Brassica napus A01p03050 A01 + View
Brassica oleracea BolC7t40969H C7 + View
Brassica oleracea BolC7t46551H C7 - View
Brassica oleracea BolC1t00327H C1 + View
Brassica oleracea BolC8t49661H C8 + View
Brassica oleracea BolC7t42826H C7 - View
Brassica rapa BraA01t00289Z A01 + View
Brassica rapa BraA07t29293Z A07 - View
Brassica rapa BraA06t24775Z A06 + View
Brassica rapa BraA07t28138Z A07 + View
Brassica rapa BraA03t15440Z A03 - View
Capsicum annuum CAN.G1238.10 PGAv.1.6.scaffold1238 + View
Capsicum annuum CAN.G354.15 PGAv.1.6.scaffold354 - View
Cannabis sativa CANSAT25G1035 NC_044370.1 - View
Cicer arietinum L. Ca_15407_v3 Ca_LG5_v3 - View
Cicer arietinum L. Ca_24979_v3 Ca_LG8_v3 + View
Corylus avellana Haze_22819 Similar to HMG1/2-like protein (Glycine max OX%3D3847) 3 + View
Corylus avellana Haze_03656 Similar to HMGB3: High mobility group B protein 3 (Arabidopsis thaliana OX%3D3702) 2 - View
Coffea canephora Cc07_g11830 HMG1/2-like protein chr7 + View
Citrus clementina Ciclev10026715m.g scaffold_7 - View
Citrus clementina Ciclev10002782m.g scaffold_5 + View
Carpinus fangiana Cfa007076 Cfa02 + View
Cardamine hirsuta CARHR107740 high mobility group B4 Chr3 - View
Cardamine hirsuta CARHR021130 high mobility group B2 Chr1 + View
Cardamine hirsuta CARHR243910 high mobility group B5 Chr7 - View
Carya illinoinensis CiPaw.07G002900 K11296 - high mobility group protein B3 (HMGB3) Chr07 - View
Carya illinoinensis CiPaw.08G074800 PTHR13711//PTHR13711:SF222 - SWI/SNF-RELATED CHROMATIN BINDING PROTEIN // HIGH MOBILITY GROUP B PROTEIN 4-RELATED Chr08 + View
Citrullus lanatus ClCG11G018780 High mobility group protein CG_Chr11 + View
Citrullus lanatus ClCG10G000260 High mobility group protein 2 CG_Chr10 + View
Cucumis melo MELO3C013723.2 High mobility group B protein 2 chr06 + View
Cucumis melo MELO3C017031.2 High mobility group B protein 2 chr07 - View
Corchorus olitorius COL.COLO4_22549 hypothetical protein AWUE01017980.1 + View
Carica papaya Cpa.g.sc26.174 supercontig_26 - View
Capsella rubella Carub.0001s2015 PTHR13711:SF223 - HIGH MOBILITY GROUP B PROTEIN 2-RELATED scaffold_1 + View
Capsella rubella Carub.0007s0475 PTHR13711//PTHR13711:SF222 - SWI/SNF-RELATED CHROMATIN BINDING PROTEIN // HIGH MOBILITY GROUP B PROTEIN 4-RELATED scaffold_7 + View
Capsella rubella Carub.0003s3165 K11296 - high mobility group protein B3 (HMGB3) scaffold_3 - View
Cucumis sativus L. CsaV3_3G000290 high mobility group B protein 2-like chr3 + View
Davidia involucrata Dinv40188 GWHABJS00000014 - View
Davidia involucrata Dinv08164 GWHABJS00000012 + View
Davidia involucrata Dinv31958 GWHABJS00000002 + View
Durio zibethinus Duzib147G1147 NW_019168470.1 + View
Durio zibethinus Duzib093G1450 NW_019167937.1 - View
Eucalyptus grandis Eucgr.J02535 Chr10 + View
Erythranthe guttata Migut.L00772 scaffold_12 - View
Eutrema salsugineum Thhalv10026524m.g PTHR13711:SF222 - HIGH MOBILITY GROUP B PROTEIN 4-RELATED scaffold_1 + View
Eutrema salsugineum Thhalv10022905m.g PTHR13711:SF222 - HIGH MOBILITY GROUP B PROTEIN 4-RELATED scaffold_11 + View
Fragaria x ananassa FAN18G3867 PTHR13711//PTHR13711:SF222 - SWI/SNF-RELATED CHROMATIN BINDING PROTEIN // HIGH MOBILITY GROUP B PROTEIN 4-RELATED Fvb5-1 - View
Fragaria x ananassa FAN04G1929 PTHR13711:SF222 - HIGH MOBILITY GROUP B PROTEIN 4-RELATED Fvb5-4 + View
Fragaria x ananassa FAN26G1647 PTHR13711:SF223 - HIGH MOBILITY GROUP B PROTEIN 2-RELATED Fvb1-2 - View
Fragaria x ananassa FAN19G0340 PTHR13711:SF223 - HIGH MOBILITY GROUP B PROTEIN 2-RELATED Fvb1-4 - View
Fragaria x ananassa FAN13G1494 PTHR13711:SF222 - HIGH MOBILITY GROUP B PROTEIN 4-RELATED Fvb5-2 + View
Fragaria x ananassa FAN23G0363 PTHR13711//PTHR13711:SF223 - SWI/SNF-RELATED CHROMATIN BINDING PROTEIN // HIGH MOBILITY GROUP B PROTEIN 2-RELATED Fvb1-3 - View
Fragaria x ananassa FAN08G1233 PTHR13711:SF223 - HIGH MOBILITY GROUP B PROTEIN 2-RELATED Fvb5-3 - View
Fragaria vesca FvH4_5g25420 PTHR13711//PTHR13711:SF222 - SWI/SNF-RELATED CHROMATIN BINDING PROTEIN // HIGH MOBILITY GROUP B PROTEIN 4-RELATED Fvb5 - View
Fragaria vesca FvH4_1g10340 PTHR13711:SF223 - HIGH MOBILITY GROUP B PROTEIN 2-RELATED Fvb1 - View
Gossypium hirsutum Gohir.D07G177800 K10802 - high mobility group protein B1 (HMGB1) D07 + View
Glycine max Glyma.06G017100 PTHR13711//PTHR13711:SF222 - SWI/SNF-RELATED CHROMATIN BINDING PROTEIN // HIGH MOBILITY GROUP B PROTEIN 4-RELATED Gm06 - View
Glycine max Glyma.04G016800 PTHR13711//PTHR13711:SF222 - SWI/SNF-RELATED CHROMATIN BINDING PROTEIN // HIGH MOBILITY GROUP B PROTEIN 4-RELATED Gm04 - View
Glycine max Glyma.16G116300 PTHR13711//PTHR13711:SF218 - SWI/SNF-RELATED CHROMATIN BINDING PROTEIN // SUBFAMILY NOT NAMED Gm16 - View
Glycine max Glyma.09G198300 PTHR13711//PTHR13711:SF218 - SWI/SNF-RELATED CHROMATIN BINDING PROTEIN // SUBFAMILY NOT NAMED Gm09 - View
Gossypium raimondii Gorai.001G198900 Chr01 + View
Hydrangea macrophylla Hma1.2p1_0300F.1_g118000 Hma1.2p1_0300F.1 - View
Lupinus albus Lalb_Chr16g0380001 K10802 - high mobility group protein B1 (HMGB1) Lalb_Chr16 + View
Lupinus albus Lalb_Chr11g0061531 PTHR13711//PTHR13711:SF222 - SWI/SNF-RELATED CHROMATIN BINDING PROTEIN // HIGH MOBILITY GROUP B PROTEIN 4-RELATED Lalb_Chr11 - View
Lupinus albus Lalb_Chr23g0265701 PTHR13711:SF222 - HIGH MOBILITY GROUP B PROTEIN 4-RELATED Lalb_Chr23 - View
Lotus japonicus Lj2g0028112 PTHR13711//PTHR13711:SF223 - SWI/SNF-RELATED CHROMATIN BINDING PROTEIN // HIGH MOBILITY GROUP B PROTEIN 2-RELATED chr2 + View
Lonicera japonica Lj2P499T18 GWHAAZE00000002 + View
Lonicera japonica Lj4C236T3 GWHAAZE00000004 + View
Lactuca sativa Lsat_1_v5_gn_3_68040 K10802 - high mobility group protein B1 (HMGB1) Lsat_1_v8_lg_3 + View
Magnolia biondii MBI08_g12260_MAGBIO AED:0.05 Chr08 - View
Malus domestica MD02G1116500 high mobility group B2 Chr02 - View
Malus domestica MD15G1231500 high mobility group B2 Chr15 - View
Manihot esculenta Manes.01G155300 Chromosome01 + View
Manihot esculenta Manes.05G124100 Chromosome05 - View
Medicago truncatula Medtr5g024180 high mobility group (HMG)-box protein chr5 + View
Medicago truncatula Medtr3g115580 high mobility group (HMG)-box protein chr3 + View
Medicago truncatula Medtr8g073345 high mobility group (HMG)-box protein chr8 - View
Nelumbo nucifera Nn6g31707 chr6 - View
Nelumbo nucifera Nn5g30987 chr5 + View
Nicotiana tabacum Nitab4.5_0000702g0140 High mobility group box domain Nitab4.5_0000702 + View
Nicotiana tabacum Nitab4.5_0000495g0130 High mobility group box domain Nitab4.5_0000495 - View
Olea europaea Oeu039713.1 chr14 - View
Olea europaea Oeu042480.1 scaffold402 + View
Olea europaea Oeu012544.1 chr7 - View
Oryza sativa ssp. japonica Os06g0728000 HMG1 protein (HMGB1). chr06 + View
Oryza sativa ssp. japonica Os04g0564600 Similar to HMG1 protein. Similar to H0409D10.9 protein. chr04 + View
Oryza sativa ssp. japonica Os09g0551600 Similar to HMGd1 protein (Nucleasome/chromatin assembly factor D protein NFD101). chr09 + View
Petunia axillaris Peaxi162Scf00580g00028 high mobility group B3 Peaxi162Scf00580 - View
Punica granatum PGR031G2351 NC_045127.1 + View
Prunus persica Prupe.7G182700 PTHR13711:SF223 - HIGH MOBILITY GROUP B PROTEIN 2-RELATED Pp07 + View
Papaver somniferum PSO675G4760 NC_039358.1 + View
Papaver somniferum PSO761G0390 NW_020622381.1 - View
Papaver somniferum PSO210G5428 NC_039359.1 + View
Papaver somniferum PSO541G1006 NC_039363.1 + View
Populus trichocarpa Potri.005G252600 PTHR13711:SF223 - HIGH MOBILITY GROUP B PROTEIN 2-RELATED Chr05 + View
Populus trichocarpa Potri.005G101400 PTHR13711:SF223 - HIGH MOBILITY GROUP B PROTEIN 2-RELATED Chr05 + View
Populus trichocarpa Potri.002G009000 PTHR13711:SF223 - HIGH MOBILITY GROUP B PROTEIN 2-RELATED Chr02 - View
Phaseolus vulgaris Phvul.003G270000 PTHR13711:SF223 - HIGH MOBILITY GROUP B PROTEIN 2-RELATED Chr03 + View
Quercus lobata QL06p052945 6 + View
Quercus lobata QL02p014787 CM012294 + View
Rosa chinensis RcHm_v2.0_Chr2g0097191 RcHm_v2.0_Chr2 - View
Rhododendron simsii Rhsim10G0196000 chr10 - View
Striga asiatica SGA_v2.0_scaffold54G19652 scaffold54 + View
Salvia bowleyana SalBow5G5592 GWHASIU00000003 + View
Salix brachista Sabra05G0196000 GWHAAZH00000005 + View
Salix brachista Sabra05G0083800 GWHAAZH00000005 + View
Sechium edule Sed0024929 LG04 - View
Sechium edule Sed0011497 LG01 - View
Sechium edule Sed0006666 LG13 + View
Solanum lycopersicum Solyc03g032130.4 High mobility group family (AHRD V3.3 *-* S8EDU2_9LAMI) SL4.0ch03 - View
Solanum lycopersicum Solyc02g082700.3 High mobility group family (AHRD V3.3 *** S8EDU2_9LAMI) SL4.0ch02 - View
Schrenkiella parvula Sp7g33350 PTHR13711:SF222 - HIGH MOBILITY GROUP B PROTEIN 4-RELATED ch7-6 - View
Schrenkiella parvula Sp3g30920 PTHR13711//PTHR13711:SF222 - SWI/SNF-RELATED CHROMATIN BINDING PROTEIN // HIGH MOBILITY GROUP B PROTEIN 4-RELATED ch3-6 - View
Solanum pennellii Sopen03g005980 HMG1/2-like protein - Ipomoea nil (Japanese morning glory) (Pharbitis nil), Encodes a protein belonging to the subgroup of HMGB (high mobility group B) proteins that have a distinctive DNA-binding motif, the HMG-box domain. The motif confers non-sequence specific interaction with linear DNA and structure-specific binding to distorted DNA sites. The HMGB proteins are involved in the assembly of nucleoprotein complexes. Can be phosphorylated by CK2alpha. | high mobility group B3 (HMGB3) | FUNCTIONS IN: chromatin binding, structural constituent of chromatin, DNA binding, sequence-specific DNA binding transcription factor activity | INVOLVED IN: chromatin assembly or disassembly | LOCATED IN: chromatin | EXPRESSED IN: 24 plant structures | EXPRESSED DURING: 13 growth stages | CONTAINS InterPro DOMAIN/s: High mobility group, superfamily , High mobility group, HMG1/HMG2 | BEST Arabidopsis thaliana protein match is: high mobility group B2 Spenn-ch03 - View
Solanum pennellii Sopen02g027450 HMG1/2-like protein - Ipomoea nil (Japanese morning glory) (Pharbitis nil), Encodes a protein belonging to the subgroup of HMGB (high mobility group B) proteins that have a distinctive DNA-binding motif, the HMG-box domain. The motif confers non-sequence specific interaction with linear DNA and structure-specific binding to distorted DNA sites. The HMGB proteins are involved in the assembly of nucleoprotein complexes. Can be phosphorylated by CK2alpha. | high mobility group B3 (HMGB3) | FUNCTIONS IN: chromatin binding, structural constituent of chromatin, DNA binding, sequence-specific DNA binding transcription factor activity | INVOLVED IN: chromatin assembly or disassembly | LOCATED IN: chromatin | EXPRESSED IN: 24 plant structures | EXPRESSED DURING: 13 growth stages | CONTAINS InterPro DOMAIN/s: High mobility group, superfamily , High mobility group, HMG1/HMG2 | BEST Arabidopsis thaliana protein match is: high mobility group B2 Spenn-ch02 - View
Solanum tuberosum PGSC0003DMG400018685 High mobility group protein 2 HMG2 ST4.03ch03 - View
Solanum tuberosum PGSC0003DMG400001567 High mobility group protein ST4.03ch02 - View
Selenicereus undatus Hund19700 Scaffold_33673 - View
Trochodendron aralioides TAR381G0891 group11 - View
Trochodendron aralioides TAR376G0234 group14 + View
Trochodendron aralioides TAR628G0839 group5 + View
Theobroma cacao Thecc.01G005700 High mobility group B4 Chromosome_1 - View
Tarenaya hassleriana THA.LOC104811475 high mobility group B protein 2-like NW_010965372.1 + View
Tarenaya hassleriana THA.LOC104819721 high mobility group B protein 4-like NW_010966177.1 - View
Tarenaya hassleriana THA.LOC104804293 high mobility group B protein 4-like NW_010971389.1 + View
Tarenaya hassleriana THA.LOC104809835 high mobility group B protein 2-like NW_010960187.1 + View
Tarenaya hassleriana THA.LOC104821354 high mobility group B protein 4-like NW_010966459.1 + View
Tarenaya hassleriana THA.LOC104826432 high mobility group B protein 4-like NW_010960188.1 - View
Tarenaya hassleriana THA.LOC104807428 high mobility group B protein 4-like NW_010963495.1 - View
Trifolium pratense TPR.G38242 Tp57577_TGAC_v2_LG7 + View
Tripterygium wilfordii TWI09G0481 NC_052245.1 - View
Vaccinium macrocarpon vmacro21798 Similar to HMGB3: High mobility group B protein 3 (Arabidopsis thaliana OX%3D3702) chr10_Vaccinium_macrocarpon_Stevens_v1 - View
Vaccinium macrocarpon vmacro18465 Similar to HMGB3: High mobility group B protein 3 (Arabidopsis thaliana OX%3D3702) chr3_Vaccinium_macrocarpon_Stevens_v1 + View
Vigna mungo VMungo0251G2684 CM024069.1 + View
Vigna mungo VMungo1309G0854 CM024072.1 + View
Vitis vinifera GSVIVG01013385001 chr18 - View
Vitis vinifera GSVIVG01026642001 chr4 + View
Zea mays Zm00001eb104320 Zm00001e120605 High mobility group B protein 2 2 + View