Paralogs (intra-species colinear regions)

Gene id Description Chromosome Strand Multiplicon
CSS0041862 PREDICTED: pentatricopeptide repeat-containing protein At5g03800 [Vitis vinifera] Chr4 + View
CSS0036596 PREDICTED: pentatricopeptide repeat-containing protein At5g66520-like [Vitis vinifera] Chr1 + View

Orthologs (inter-species colinear regions)

Organism Gene id Description Chromosome Strand Multiplicon
Aethionema arabicum Aa31LG5G21950 LG-5 - View
Acer truncatum Atru.chr8.1680 chr8 + View
Actinidia chinensis Actinidia31302 Lachesis_group20 - View
Arabidopsis lyrata AL4G32944 scaffold_4 - View
Arabidopsis lyrata AL6G13380 scaffold_6 - View
Avicennia marina MSTRG.5791 ScioBoG_102839_HRSCAF_103093 + View
Amaranthus hybridus Ah.15g091250 Pentatricopeptide repeat-containing protein At5g03800 (Protein EMBRYO DEFECTIVE 175) AmaHy_arrow1_Scaffold_15 + View
Amaranthus hybridus Ah.08g211000 Pentatricopeptide repeat-containing protein At1g62260, mitochondrial AmaHy_arrow1_Scaffold_8 - View
Aquilegia oxysepala Aqoxy1G01015_Aqoxy1G01016 CHR01 - View
Arabidopsis thaliana AT2G36730 Pentatricopeptide repeat (PPR) superfamily protein Pentatricopeptide repeat (PPR) superfamily protein%3B CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885)%3B BEST Arabidopsis thaliana protein match is: Tetratricopeptide repeat (TPR)-like superfamily protein (TAIR:AT4G21065.1)%3B Has 32545 Blast hits to 13146 proteins in 206 species: Archae - 0%3B Bacteria - 9%3B Metazoa - 61%3B Fungi - 42%3B Plants - 32037%3B Viruses - 0%3B Other Eukaryotes - 396 (source: NCBI BLink). Chr2 - View
Arabidopsis thaliana AT5G03800 Pentatricopeptide repeat (PPR) superfamily protein Encodes a protein with a large central domain of 14 internal pentatricopeptide motifs (some degenerate) arranged in tandem. Mutations in this locus result in embryo lethality. EMBRYO DEFECTIVE 175 (EMB175)%3B FUNCTIONS IN: catalytic activity%3B INVOLVED IN: embryo development ending in seed dormancy%3B LOCATED IN: chloroplast%2C membrane%3B EXPRESSED IN: root%2C flower%2C leaf%3B CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885)%3B BEST Arabidopsis thaliana protein match is: Tetratricopeptide repeat (TPR)-like superfamily protein (TAIR:AT3G49170.1)%3B Has 41516 Blast hits to 13216 proteins in 205 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 24%3B Fungi - 21%3B Plants - 41054%3B Viruses - 0%3B Other Eukaryotes - 417 (source: NCBI BLink). Chr5 - View
Brassica carinata BcaB06g28983 ChrB06 + View
Brassica carinata BcaC02g11792 ChrC02 + View
Brassica napus A03p47170 A03 - View
Beta vulgaris EL10Ac7g16742 PF14432 - DYW family of nucleic acid deaminases (DYW_deaminase) Chr7_EL10_PGA_scaffold5 - View
Cannabis sativa CANSAT80G2556 NC_044372.1 + View
Cicer arietinum L. Ca_08947_v3 Ca_LG3_v3 + View
Corylus avellana Haze_19503 Similar to EMB175: Pentatricopeptide repeat-containing protein At5g03800 (Arabidopsis thaliana OX%3D3702) 10 + View
Coffea canephora Cc06_g04910 Pentatricopeptide repeat-containing protein At5g03800 chr6 + View
Citrus clementina Ciclev10011036m.g scaffold_6 + View
Carpinus fangiana Cfa016499 Cfa07 + View
Cardamine hirsuta CARHR131090 Pentatricopeptide repeat-containing protein Chr4 - View
Cardamine hirsuta CARHR209460 Pentatricopeptide repeat-containing protein Chr6 + View
Citrullus lanatus ClCG04G009630 Pentatricopeptide repeat protein 91 CG_Chr04 + View
Citrullus lanatus ClCG10G019710 Pentatricopeptide repeat-containing protein CG_Chr10 + View
Cucumis melo MELO3C033153.2 pentatricopeptide repeat-containing protein At5g03800 chr08 - View
Carica papaya Cpa.g.sc5.112 supercontig_5 - View
Chenopodium quinoa AUR62037918 EMB175: Pentatricopeptide repeat-containing protein At5g03800 C_Quinoa_Scaffold_3859 + View
Chenopodium quinoa AUR62040169 EMB175: Pentatricopeptide repeat-containing protein At5g03800 C_Quinoa_Scaffold_3626 + View
Chenopodium quinoa AUR62023992 PCMP-E31: Pentatricopeptide repeat-containing protein At3g14730 C_Quinoa_Scaffold_3389 - View
Capsella rubella Carub.0006s0274 PF01535//PF13041//PF14432 - PPR repeat (PPR) // PPR repeat family (PPR_2) // DYW family of nucleic acid deaminases (DYW_deaminase) scaffold_6 - View
Cucumis sativus L. CsaV3_6G040260 pentatricopeptide repeat-containing protein At5g03800 chr6 + View
Davidia involucrata Dinv35845 GWHABJS00000015 + View
Durio zibethinus Duzib106G0832 NW_019168492.1 - View
Erigeron canadensis ECA238G3137 Conyza_canadensis_scaffold:6 - View
Erythranthe guttata Migut.J00485 scaffold_10 + View
Eutrema salsugineum Thhalv10012634m.g PF01535//PF13041//PF14432 - PPR repeat (PPR) // PPR repeat family (PPR_2) // DYW family of nucleic acid deaminases (DYW_deaminase) scaffold_2 - View
Eutrema salsugineum Thhalv10017676m.g PF01535//PF13041 - PPR repeat (PPR) // PPR repeat family (PPR_2) scaffold_10 - View
Fragaria x ananassa FAN09G0190 PF01535//PF13041//PF14432 - PPR repeat (PPR) // PPR repeat family (PPR_2) // DYW family of nucleic acid deaminases (DYW_deaminase) Fvb6-2 - View
Fragaria x ananassa FAN05G1177 PF13041 - PPR repeat family (PPR_2) Fvb6-3 - View
Fragaria x ananassa FAN01G1774 PF13041//PF13812 - PPR repeat family (PPR_2) // Pentatricopeptide repeat domain (PPR_3) Fvb7-4 - View
Fragaria x ananassa FAN05G3379 PF13041 - PPR repeat family (PPR_2) Fvb6-3 - View
Fragaria x ananassa FAN05G2826 PF01535//PF13041 - PPR repeat (PPR) // PPR repeat family (PPR_2) Fvb6-3 - View
Fragaria x ananassa FAN02G0793 PF01535//PF13041//PF14432 - PPR repeat (PPR) // PPR repeat family (PPR_2) // DYW family of nucleic acid deaminases (DYW_deaminase) Fvb6-4 + View
Fragaria x ananassa FAN03G1124 PF01535//PF13041 - PPR repeat (PPR) // PPR repeat family (PPR_2) Fvb7-3 - View
Fragaria x ananassa FAN14G2509 PF01535//PF13041 - PPR repeat (PPR) // PPR repeat family (PPR_2) Fvb6-1 + View
Fragaria vesca FvH4_6g17380 PF01535//PF13041//PF14432 - PPR repeat (PPR) // PPR repeat family (PPR_2) // DYW family of nucleic acid deaminases (DYW_deaminase) Fvb6 + View
Gossypium hirsutum Gohir.A13G159200 PF01535//PF13041//PF14432 - PPR repeat (PPR) // PPR repeat family (PPR_2) // DYW family of nucleic acid deaminases (DYW_deaminase) A13 + View
Gossypium hirsutum Gohir.D01G200000 PF01535//PF13041//PF14432 - PPR repeat (PPR) // PPR repeat family (PPR_2) // DYW family of nucleic acid deaminases (DYW_deaminase) D01 - View
Gossypium hirsutum Gohir.A01G211200 PF01535//PF13041//PF14432 - PPR repeat (PPR) // PPR repeat family (PPR_2) // DYW family of nucleic acid deaminases (DYW_deaminase) A01 - View
Glycine max Glyma.13G150300 PF01535//PF12854//PF13041 - PPR repeat (PPR) // PPR repeat (PPR_1) // PPR repeat family (PPR_2) Gm13 + View
Glycine max Glyma.19G189200 PF13041 - PPR repeat family (PPR_2) Gm19 + View
Glycine max Glyma.03G189000 PF01535//PF13041//PF14432 - PPR repeat (PPR) // PPR repeat family (PPR_2) // DYW family of nucleic acid deaminases (DYW_deaminase) Gm03 + View
Gossypium raimondii Gorai.002G244700 Chr02 - View
Lupinus albus Lalb_Chr20g0112311 PF01535//PF13041//PF14432 - PPR repeat (PPR) // PPR repeat family (PPR_2) // DYW family of nucleic acid deaminases (DYW_deaminase) Lalb_Chr20 - View
Lotus japonicus Lj1g0002958 PF01535//PF13041//PF14432 - PPR repeat (PPR) // PPR repeat family (PPR_2) // DYW family of nucleic acid deaminases (DYW_deaminase) chr1 - View
Lotus japonicus Lj5g0012856 PF01535//PF13041 - PPR repeat (PPR) // PPR repeat family (PPR_2) chr5 + View
Lotus japonicus Lj3g0009534 PTHR11062:SF46 - GLUCURONOXYLAN GLUCURONOSYLTRANSFERASE F8H-RELATED chr3 - View
Lonicera japonica Lj3P1010T35 GWHAAZE00000003 - View
Lactuca sativa Lsat_1_v5_gn_2_24360 PF01535//PF13041//PF14432 - PPR repeat (PPR) // PPR repeat family (PPR_2) // DYW family of nucleic acid deaminases (DYW_deaminase) Lsat_1_v8_lg_2 - View
Lactuca sativa Lsat_1_v5_gn_6_28020 PF01535//PF12854//PF13041//PF14432 - PPR repeat (PPR) // PPR repeat (PPR_1) // PPR repeat family (PPR_2) // DYW family of nucleic acid deaminases (DYW_deaminase) Lsat_1_v8_lg_6 - View
Manihot esculenta Manes.08G017700 Chromosome08 + View
Medicago truncatula Medtr7g103230 PPR containing plant-like protein chr7 + View
Nelumbo nucifera Nn2g13915 chr2 - View
Olea europaea Oeu039847.1 chr11 - View
Punica granatum PGR142G4282 NC_045128.1 + View
Prunus persica Prupe.7G121700 PF01535//PF13041//PF14432 - PPR repeat (PPR) // PPR repeat family (PPR_2) // DYW family of nucleic acid deaminases (DYW_deaminase) Pp07 - View
Pisum sativum Psat3g037600 DYW family of nucleic acid deaminases chr3LG5 - View
Papaver somniferum PSO339G3584 NC_039366.1 + View
Papaver somniferum PSO063G0191 NC_039364.1 - View
Populus trichocarpa Potri.006G118200 PTHR11240//PTHR11240:SF20 - RIBONUCLEASE T2 // SUBFAMILY NOT NAMED Chr06 - View
Phaseolus vulgaris Phvul.001G179800 PF01535//PF13041 - PPR repeat (PPR) // PPR repeat family (PPR_2) Chr01 - View
Phaseolus vulgaris Phvul.001G184400 PF01535//PF13041//PF14432 - PPR repeat (PPR) // PPR repeat family (PPR_2) // DYW family of nucleic acid deaminases (DYW_deaminase) Chr01 + View
Quercus lobata QL01p014299 1 - View
Quercus lobata QL07p041150 7 - View
Rosa chinensis RcHm_v2.0_Chr3g0471571 RcHm_v2.0_Chr3 + View
Striga asiatica SGA_v2.0_scaffold75G24811 scaffold75 - View
Salvia bowleyana SalBow5G5026 GWHASIU00000003 - View
Salvia bowleyana SalBow3G3695 GWHASIU00000006 - View
Simmondsia chinensis Sc20g0005960 GWHAASQ00000020 + View
Sechium edule Sed0023285 LG14 - View
Sechium edule Sed0000141 LG01 - View
Schrenkiella parvula Sp4g19010 PF01535//PF13041 - PPR repeat (PPR) // PPR repeat family (PPR_2) ch4-6 - View
Schrenkiella parvula Sp4g10920 PTHR11062//PTHR11062:SF46 - EXOSTOSIN HEPARAN SULFATE GLYCOSYLTRANSFERASE -RELATED // GLUCURONOXYLAN GLUCURONOSYLTRANSFERASE F8H-RELATED ch4-6 - View
Schrenkiella parvula Sp6g38910 PF01535//PF13041//PF14432 - PPR repeat (PPR) // PPR repeat family (PPR_2) // DYW family of nucleic acid deaminases (DYW_deaminase) ch6-6 + View
Theobroma cacao Thecc.05G077300 Pentatricopeptide repeat (PPR) superfamily protein Chromosome_5 + View
Tarenaya hassleriana THA.LOC104816383 pentatricopeptide repeat-containing protein At5g03800 NW_010965775.1 - View
Tripterygium wilfordii TWI77G0897 NC_052236.1 - View
Utricularia gibba unitig_27.g25013 unitig_27 + View
Vigna mungo VMungo1383G2672 CM024070.1 + View
Vitis vinifera GSVIVG01033735001 chr8 - View