Paralogs (intra-species colinear regions)

Gene id Description Chromosome Strand Multiplicon
A08p20020 A08 - View
A01p09420 A01 - View
C01p10970 C01 - View

Orthologs (inter-species colinear regions)

Organism Gene id Description Chromosome Strand Multiplicon
Aethionema arabicum Aa31LG1G9070 LG-1 + View
Aethionema arabicum Aa31LG2G21900 LG-2 - View
Arabidopsis lyrata AL1G13460 scaffold_1 + View
Arabidopsis lyrata AL7G24030 scaffold_7 - View
Arabidopsis thaliana AT4G28520 cruciferin 3 Encodes a 12S seed storage protein that is tyrosine-phosphorylated and its phosphorylation state is modulated in response to ABA in Arabidopsis thaliana seeds. cruciferin 3 (CRU3)%3B FUNCTIONS IN: nutrient reservoir activity%3B INVOLVED IN: response to abscisic acid stimulus%2C embryo development ending in seed dormancy%3B LOCATED IN: protein body%3B EXPRESSED IN: 7 plant structures%3B EXPRESSED DURING: seedling growth%2C seed development stages%3B CONTAINS InterPro DOMAIN/s: 11-S seed storage protein%2C conserved site (InterPro:IPR022379)%2C Cupin%2C RmlC-type (InterPro:IPR011051)%2C Cupin 1 (InterPro:IPR006045)%2C RmlC-like jelly roll fold (InterPro:IPR014710)%2C 11-S seed storage protein%2C plant (InterPro:IPR006044)%3B BEST Arabidopsis thaliana protein match is: RmlC-like cupins superfamily protein (TAIR:AT5G44120.3)%3B Has 6518 Blast hits to 3043 proteins in 462 species: Archae - 6%3B Bacteria - 857%3B Metazoa - 718%3B Fungi - 277%3B Plants - 2299%3B Viruses - 10%3B Other Eukaryotes - 2351 (source: NCBI BLink). Chr4 + View
Arabidopsis thaliana AT1G03880 cruciferin 2 Protein is tyrosine-phosphorylated and its phosphorylation state is modulated in response to ABA in Arabidopsis thaliana seeds. cruciferin 2 (CRU2)%3B FUNCTIONS IN: nutrient reservoir activity%3B INVOLVED IN: seed germination%2C response to abscisic acid stimulus%3B LOCATED IN: endomembrane system%3B EXPRESSED IN: leaf%2C seed%3B EXPRESSED DURING: seedling growth%2C seed development stages%3B CONTAINS InterPro DOMAIN/s: 11-S seed storage protein%2C conserved site (InterPro:IPR022379)%2C Cupin%2C RmlC-type (InterPro:IPR011051)%2C Cupin 1 (InterPro:IPR006045)%2C RmlC-like jelly roll fold (InterPro:IPR014710)%2C 11-S seed storage protein%2C plant (InterPro:IPR006044)%3B BEST Arabidopsis thaliana protein match is: RmlC-like cupins superfamily protein (TAIR:AT5G44120.3)%3B Has 919 Blast hits to 884 proteins in 120 species: Archae - 0%3B Bacteria - 10%3B Metazoa - 2%3B Fungi - 0%3B Plants - 906%3B Viruses - 0%3B Other Eukaryotes - 1 (source: NCBI BLink). Chr1 + View
Brassica carinata BcaB03g12577 ChrB03 + View
Brassica carinata BcaC09g51654 ChrC09 + View
Brassica carinata BcaC07g38336 ChrC07 + View
Brassica oleracea BolC1t01059H C1 - View
Brassica rapa BraA01t00884Z A01 - View
Brassica rapa BraA08t33962Z A08 - View
Cardamine hirsuta CARHR236300 11S seed storage globulin A Chr7 + View
Cardamine hirsuta CARHR003210 11S seed storage globulin B Chr1 + View
Carica papaya Cpa.g.sc165.7 supercontig_165 + View
Capsella rubella Carub.0007s1216 PTHR31189//PTHR31189:SF1 - FAMILY NOT NAMED // 12S SEED STORAGE PROTEIN CRA1-RELATED scaffold_7 - View
Eutrema salsugineum Thhalv10027035m.g PTHR31189:SF1 - 12S SEED STORAGE PROTEIN CRA1-RELATED scaffold_1 - View
Lupinus albus Lalb_Chr25g0289961 PTHR31189:SF1 - 12S SEED STORAGE PROTEIN CRA1-RELATED Lalb_Chr25 + View
Lupinus albus Lalb_Chr21g0313861 PTHR31189//PTHR31189:SF1 - FAMILY NOT NAMED // 12S SEED STORAGE PROTEIN CRA1-RELATED Lalb_Chr21 - View
Lactuca sativa Lsat_1_v5_gn_5_183501 PTHR31189:SF1 - 12S SEED STORAGE PROTEIN CRA1-RELATED Lsat_1_v8_lg_5 + View
Schrenkiella parvula Sp7g26500 PTHR31189//PTHR31189:SF1 - FAMILY NOT NAMED // 12S SEED STORAGE PROTEIN CRA1-RELATED ch7-5 + View
Trochodendron aralioides TAR365G0135 group16 - View
Tarenaya hassleriana THA.LOC104824683 cruciferin PGCRURSE5 NW_010966933.1 - View