Gene family expansion analysis
Gene family information
- Gene count gene family 172
- Total coding gene count 3,667,693
Keywords
Organisms
| Organism | Total genes | Genes in family | Percentage total | Percentage family | Ratio family vs. total |
|---|---|---|---|---|---|
| Arabidopsis lyrata | 31,073 | 3 | 0.85% | 1.74% | 2.05 |
| Arabidopsis thaliana | 27,655 | 2 | 0.75% | 1.16% | 1.55 |
| Capsella rubella | 27,682 | 2 | 0.75% | 1.16% | 1.55 |
| Cardamine hirsuta | 29,458 | 3 | 0.8% | 1.74% | 2.18 |
| Brassica carinata | 97,149 | 3 | 2.65% | 1.74% | 0.66 |
| Brassica oleracea | 61,279 | 0 | 1.67% | 0% | 0 |
| Brassica napus | 108,190 | 3 | 2.95% | 1.74% | 0.59 |
| Brassica rapa | 46,721 | 1 | 1.27% | 0.58% | 0.46 |
| Schrenkiella parvula | 26,847 | 1 | 0.73% | 0.58% | 0.79 |
| Eutrema salsugineum | 26,351 | 2 | 0.72% | 1.16% | 1.61 |
| Aethionema arabicum | 24,932 | 2 | 0.68% | 1.16% | 1.71 |
| Tarenaya hassleriana | 27,398 | 2 | 0.75% | 1.16% | 1.55 |
| Carica papaya | 27,768 | 0 | 0.76% | 0% | 0 |
| Corchorus olitorius | 35,704 | 1 | 0.97% | 0.58% | 0.6 |
| Theobroma cacao | 27,379 | 2 | 0.75% | 1.16% | 1.55 |
| Gossypium hirsutum | 75,376 | 6 | 2.06% | 3.49% | 1.69 |
| Gossypium raimondii | 37,505 | 3 | 1.02% | 1.74% | 1.71 |
| Durio zibethinus | 34,943 | 4 | 0.95% | 2.33% | 2.45 |
| Acer truncatum | 28,438 | 2 | 0.78% | 1.16% | 1.49 |
| Citrus clementina | 24,533 | 2 | 0.67% | 1.16% | 1.73 |
| Eucalyptus grandis | 36,349 | 2 | 0.99% | 1.16% | 1.17 |
| Punica granatum | 23,231 | 2 | 0.63% | 1.16% | 1.84 |
| Corylus avellana | 27,791 | 0 | 0.76% | 0% | 0 |
| Carpinus fangiana | 27,379 | 1 | 0.75% | 0.58% | 0.77 |
| Carya illinoinensis | 32,267 | 4 | 0.88% | 2.33% | 2.65 |
| Quercus lobata | 39,366 | 1 | 1.07% | 0.58% | 0.54 |
| Cucumis melo | 29,980 | 1 | 0.82% | 0.58% | 0.71 |
| Cucumis sativus L. | 24,317 | 0 | 0.66% | 0% | 0 |
| Citrullus lanatus | 22,545 | 2 | 0.61% | 1.16% | 1.9 |
| Sechium edule | 28,237 | 4 | 0.77% | 2.33% | 3.03 |
| Fragaria x ananassa | 108,087 | 5 | 2.95% | 2.91% | 0.99 |
| Fragaria vesca | 34,006 | 2 | 0.93% | 1.16% | 1.25 |
| Rosa chinensis | 45,469 | 2 | 1.24% | 1.16% | 0.94 |
| Malus domestica | 45,116 | 2 | 1.23% | 1.16% | 0.94 |
| Prunus persica | 26,873 | 3 | 0.73% | 1.74% | 2.38 |
| Cannabis sativa | 24,962 | 1 | 0.68% | 0.58% | 0.85 |
| Medicago truncatula | 50,894 | 3 | 1.39% | 1.74% | 1.25 |
| Trifolium pratense | 39,948 | 2 | 1.09% | 1.16% | 1.06 |
| Pisum sativum | 44,756 | 2 | 1.22% | 1.16% | 0.95 |
| Cicer arietinum L. | 31,358 | 1 | 0.85% | 0.58% | 0.68 |
| Lotus japonicus | 28,251 | 2 | 0.77% | 1.16% | 1.51 |
| Glycine max | 52,872 | 6 | 1.44% | 3.49% | 2.42 |
| Phaseolus vulgaris | 27,433 | 3 | 0.75% | 1.74% | 2.32 |
| Vigna mungo | 32,729 | 0 | 0.89% | 0% | 0 |
| Lupinus albus | 38,258 | 3 | 1.04% | 1.74% | 1.67 |
| Arachis hypogaea | 67,124 | 6 | 1.83% | 3.49% | 1.91 |
| Manihot esculenta | 32,805 | 3 | 0.89% | 1.74% | 1.96 |
| Sapria himalayana | 55,162 | 0 | 1.5% | 0% | 0 |
| Populus trichocarpa | 34,699 | 3 | 0.95% | 1.74% | 1.83 |
| Salix brachista | 30,209 | 2 | 0.82% | 1.16% | 1.41 |
| Tripterygium wilfordii | 30,703 | 3 | 0.84% | 1.74% | 2.07 |
| Vitis vinifera | 26,346 | 2 | 0.72% | 1.16% | 1.61 |
| Rhododendron simsii | 32,999 | 2 | 0.9% | 1.16% | 1.29 |
| Vaccinium macrocarpon | 22,836 | 2 | 0.62% | 1.16% | 1.87 |
| Actinidia chinensis | 40,466 | 3 | 1.1% | 1.74% | 1.58 |
| Camellia sinensis var. sinensis | 50,525 | 4 | 1.38% | 2.33% | 1.69 |
| Davidia involucrata | 42,554 | 0 | 1.16% | 0% | 0 |
| Hydrangea macrophylla | 32,222 | 2 | 0.88% | 1.16% | 1.32 |
| Erythranthe guttata | 28,140 | 2 | 0.77% | 1.16% | 1.51 |
| Striga asiatica | 33,423 | 0 | 0.91% | 0% | 0 |
| Salvia bowleyana | 43,958 | 2 | 1.2% | 1.16% | 0.97 |
| Utricularia gibba | 29,666 | 1 | 0.81% | 0.58% | 0.72 |
| Avicennia marina | 23,331 | 1 | 0.64% | 0.58% | 0.91 |
| Olea europaea | 50,684 | 1 | 1.38% | 0.58% | 0.42 |
| Capsicum annuum | 35,884 | 2 | 0.98% | 1.16% | 1.18 |
| Solanum lycopersicum | 34,075 | 1 | 0.93% | 0.58% | 0.62 |
| Solanum pennellii | 44,965 | 1 | 1.23% | 0.58% | 0.47 |
| Solanum tuberosum | 39,028 | 0 | 1.06% | 0% | 0 |
| Nicotiana tabacum | 69,500 | 0 | 1.89% | 0% | 0 |
| Petunia axillaris | 32,928 | 0 | 0.9% | 0% | 0 |
| Coffea canephora | 25,574 | 1 | 0.7% | 0.58% | 0.83 |
| Erigeron canadensis | 45,483 | 1 | 1.24% | 0.58% | 0.47 |
| Helianthus annuus | 52,243 | 1 | 1.42% | 0.58% | 0.41 |
| Lactuca sativa | 38,910 | 1 | 1.06% | 0.58% | 0.55 |
| Daucus carota | 32,113 | 1 | 0.88% | 0.58% | 0.66 |
| Lonicera japonica | 33,939 | 0 | 0.93% | 0% | 0 |
| Beta vulgaris | 24,255 | 0 | 0.66% | 0% | 0 |
| Chenopodium quinoa | 44,776 | 2 | 1.22% | 1.16% | 0.95 |
| Amaranthus hybridus | 23,819 | 3 | 0.65% | 1.74% | 2.68 |
| Selenicereus undatus | 31,522 | 0 | 0.86% | 0% | 0 |
| Simmondsia chinensis | 23,490 | 1 | 0.64% | 0.58% | 0.91 |
| Trochodendron aralioides | 35,328 | 2 | 0.96% | 1.16% | 1.21 |
| Nelumbo nucifera | 46,712 | 3 | 1.27% | 1.74% | 1.37 |
| Aquilegia oxysepala | 25,571 | 2 | 0.7% | 1.16% | 1.66 |
| Papaver somniferum | 61,433 | 2 | 1.67% | 1.16% | 0.69 |
| Ceratophyllum demersum | 25,323 | 1 | 0.69% | 0.58% | 0.84 |
| Magnolia biondii | 41,181 | 0 | 1.12% | 0% | 0 |
| Oryza sativa ssp. japonica | 35,489 | 2 | 0.97% | 1.16% | 1.2 |
| Zea mays | 39,756 | 0 | 1.08% | 0% | 0 |
| Vanilla planifolia | 29,167 | 1 | 0.8% | 0.58% | 0.73 |
| Amborella trichopoda | 26,846 | 0 | 0.73% | 0% | 0 |
| Sequoiadendron giganteum | 41,631 | 0 | 1.14% | 0% | 0 |
| Selaginella moellendorffii | 22,285 | 1 | 0.61% | 0.58% | 0.95 |
| Anthoceros agrestis | 25,846 | 0 | 0.7% | 0% | 0 |
| Marchantia polymorpha | 19,287 | 1 | 0.53% | 0.58% | 1.09 |
| Physcomitrium patens | 32,926 | 2 | 0.9% | 1.16% | 1.29 |
| Chara braunii | 34,718 | 0 | 0.95% | 0% | 0 |
| Chlamydomonas reinhardtii | 17,741 | 1 | 0.48% | 0.58% | 1.21 |
| Micromonas commoda | 10,103 | 1 | 0.28% | 0.58% | 2.07 |
| Prasinoderma coloniale | 7,139 | 1 | 0.19% | 0.58% | 3.05 |
Phylogenetic clades
| Clade | Num species | Total genes | Genes in family | Percentage total | Percentage family | Ratio family vs. total |
|---|---|---|---|---|---|---|
| Arabidopsis | 2 | 58,728 | 5 | 1.6% | 2.91% | 1.82 |
| Camelineae | 3 | 86,410 | 7 | 2.36% | 4.07% | 1.72 |
| Brassica | 4 | 313,339 | 7 | 8.54% | 4.07% | 0.48 |
| Brassicaceae | 11 | 507,337 | 22 | 13.83% | 12.79% | 0.92 |
| Brassicales | 13 | 562,503 | 24 | 15.34% | 13.95% | 0.91 |
| Gossypium | 2 | 112,881 | 9 | 3.08% | 5.23% | 1.7 |
| Malvaceae | 5 | 210,907 | 16 | 5.75% | 9.3% | 1.62 |
| Sapindales | 2 | 52,971 | 4 | 1.44% | 2.33% | 1.62 |
| Myrtales | 2 | 59,580 | 4 | 1.62% | 2.33% | 1.44 |
| Malvids | 22 | 885,961 | 48 | 24.16% | 27.91% | 1.16 |
| Betulaceae | 2 | 55,170 | 1 | 1.5% | 0.58% | 0.39 |
| Fagales | 4 | 126,803 | 6 | 3.46% | 3.49% | 1.01 |
| Cucumis | 2 | 54,297 | 1 | 1.48% | 0.58% | 0.39 |
| Benincaseae | 3 | 76,842 | 3 | 2.1% | 1.74% | 0.83 |
| Cucurbitaceae | 4 | 105,079 | 7 | 2.86% | 4.07% | 1.42 |
| Fragaria | 2 | 142,093 | 7 | 3.87% | 4.07% | 1.05 |
| Rosoideae | 3 | 187,562 | 9 | 5.11% | 5.23% | 1.02 |
| Amygdaloideae | 2 | 71,989 | 5 | 1.96% | 2.91% | 1.48 |
| Rosaceae | 5 | 259,551 | 14 | 7.08% | 8.14% | 1.15 |
| Rosales | 6 | 284,513 | 15 | 7.76% | 8.72% | 1.12 |
| Trifolieae | 2 | 90,842 | 5 | 2.48% | 2.91% | 1.17 |
| IRL_clade | 4 | 166,956 | 8 | 4.55% | 4.65% | 1.02 |
| Hologalegina | 5 | 195,207 | 10 | 5.32% | 5.81% | 1.09 |
| Phaseoleae | 3 | 113,034 | 9 | 3.08% | 5.23% | 1.7 |
| NPAAA_clade | 8 | 308,241 | 19 | 8.4% | 11.05% | 1.32 |
| Saliceae | 2 | 64,908 | 5 | 1.77% | 2.91% | 1.64 |
| Malpighiales | 4 | 152,875 | 8 | 4.17% | 4.65% | 1.12 |
| Fabids | 29 | 1,113,596 | 67 | 30.36% | 38.95% | 1.28 |
| Rosids | 52 | 2,025,903 | 117 | 55.24% | 68.02% | 1.23 |
| Ericaceae | 2 | 55,835 | 4 | 1.52% | 2.33% | 1.53 |
| Ericales | 4 | 146,826 | 11 | 4% | 6.4% | 1.6 |
| Cornales | 2 | 74,776 | 2 | 2.04% | 1.16% | 0.57 |
| Lamiales | 6 | 209,202 | 7 | 5.7% | 4.07% | 0.71 |
| Solanum | 3 | 118,068 | 2 | 3.22% | 1.16% | 0.36 |
| Solanoideae | 4 | 153,952 | 4 | 4.2% | 2.33% | 0.55 |
| Solanaceae | 6 | 256,380 | 4 | 6.99% | 2.33% | 0.33 |
| Lamiids | 13 | 491,156 | 12 | 13.39% | 6.98% | 0.52 |
| Asteroideae | 2 | 97,726 | 2 | 2.66% | 1.16% | 0.44 |
| Asteraceae | 3 | 136,636 | 3 | 3.73% | 1.74% | 0.47 |
| Campanulids | 5 | 202,688 | 4 | 5.53% | 2.33% | 0.42 |
| Asterids | 24 | 915,446 | 29 | 24.96% | 16.86% | 0.68 |
| Chenopodiaceae | 2 | 69,031 | 2 | 1.88% | 1.16% | 0.62 |
| Caryophyllales | 5 | 147,862 | 6 | 4.03% | 3.49% | 0.87 |
| Pentapetalae | 81 | 3,089,211 | 152 | 84.23% | 88.37% | 1.05 |
| Ranunculales | 2 | 87,004 | 4 | 2.37% | 2.33% | 0.98 |
| Poaceae | 2 | 75,245 | 2 | 2.05% | 1.16% | 0.57 |
| Liliopsida | 3 | 104,412 | 3 | 2.85% | 1.74% | 0.61 |
| Mesangiospermae | 90 | 3,429,171 | 165 | 93.5% | 95.93% | 1.03 |
| Magnoliopsida | 91 | 3,456,017 | 165 | 94.23% | 95.93% | 1.02 |
| Spermatophyta | 92 | 3,497,648 | 165 | 95.36% | 95.93% | 1.01 |
| Tracheophyta | 93 | 3,519,933 | 166 | 95.97% | 96.51% | 1.01 |
| MossesLiverworts | 2 | 52,213 | 3 | 1.42% | 1.74% | 1.23 |
| Bryophyta | 3 | 78,059 | 3 | 2.13% | 1.74% | 0.82 |
| Embryophyta | 96 | 3,597,992 | 169 | 98.1% | 98.26% | 1 |
| Streptophytina | 97 | 3,632,710 | 169 | 99.05% | 98.26% | 0.99 |
| Chlorophyta | 2 | 27,844 | 2 | 0.76% | 1.16% | 1.53 |
| Viridiplantae | 100 | 3,667,693 | 172 | 100% | 100% | 1 |