Cluster id E-value Cluster size Chromosome Identifier Description
CH_shi_1 7.26279e-22 9 scaffold11_13529635 24.2.2.9 Solute transport.carrier-mediated transport.MFS superfamily.anion transporter (NRT1/PTR)
CH_shi_10 0.00000000000280452 4 scaffold17_11767850 24.3.17 Solute transport.channels.mechanosensitive ion channel (Piezo)
CH_shi_100 0.0000571804 2 scaffold42_4718812 23.5.1.2.8 Protein translocation.nucleus.nucleocytoplasmic transport.cargo receptor activities.import karyopherin (SAD2/EMA1)
CH_shi_101 0.0000571804 2 scaffold52_3862006 24.1.1.2.6 Solute transport.primary active transport.V-type ATPase complex.peripheral V1 subcomplex.subunit F
CH_shi_102 0.0000571804 2 scaffold3_21451142 24.1.1.2.8 Solute transport.primary active transport.V-type ATPase complex.peripheral V1 subcomplex.subunit H
CH_shi_103 0.0000571804 2 scaffold59_3208471 24.2.9.1.4 Solute transport.carrier-mediated transport.CDF superfamily.CaCA family.cation exchanger (NCL/EF-CAX)
CH_shi_104 0.0000571804 2 scaffold42_4718812 27.5.2.7.3 Multi-process regulation.phosphatidylinositol and inositol phosphate system.degradation.SAC phosphoinositide phosphatase activities.SAC-group-III phosphoinositide phosphatase
CH_shi_105 0.0000571804 2 scaffold1_25991295 4.1.1.2.6 Amino acid metabolism.biosynthesis.glutamate family.histidine.imidazoleglycerol-phosphate dehydratase
CH_shi_106 0.0000571804 2 scaffold12_13443846 9.2.2.6.1 Secondary metabolism.phenolics.flavonoid biosynthesis.flavonols.flavonol synthase
CH_shi_107 0.0000571804 2 scaffold10_15062905 11.4.2.1 Phytohormone action.cytokinin.perception and signal transduction.receptor protein (AHK)
CH_shi_108 0.0000571804 2 scaffold2_22354274 12.3.1.2 Chromatin organisation.post-translational histone modification.histone acetylation.histone acetyltransferase (HAC/HPCAT)
CH_shi_109 0.0000571804 2 scaffold52_3862006 12.4.3.4 Chromatin organisation.nucleosome remodeling.INO80 chromatin remodeling complex.component IES6
CH_shi_11 0.00000000000841332 4 scaffold9_16683904 22.3.4.5.5.1 Vesicle trafficking.post-Golgi trafficking.vesicle tethering.RAB5-RAB7-dependent pathway.MON1-CCZ1 RAB7 nucleotide exchange factor complex.component MON1/SAND
CH_shi_110 0.0000571804 2 scaffold13_12996478 15.4.4.3 RNA biosynthesis.RNA polymerase III-dependent transcription.TFIIIc transcription factor complex.promotor-binding component TFC3
CH_shi_111 0.0000571804 2 scaffold6_19132642 16.5.3.5 RNA processing.RNA modification.pseudouridylation.tRNA pseudouridine synthase (Pus10)
CH_shi_112 0.0000571804 2 scaffold52_3862006 16.5.7.7 RNA processing.RNA modification.tRNA methylation.tRNA uridine-methyltransferase (TRM2)
CH_shi_113 0.0000571804 2 scaffold1_25991295 19.3.2.3 Protein homeostasis.autophagy.nucleation complexes.auxiliary ATG6-stability component TRAF1
CH_shi_114 0.0000571804 2 scaffold5_19632047 22.3.3.3 Vesicle trafficking.post-Golgi trafficking.vacuolar protein sorting.regulatory factor (COV1)
CH_shi_115 0.0000571804 2 scaffold9_16683904 22.5.1.4 Vesicle trafficking.exocytic trafficking.Exocyst complex.component SEC6
CH_shi_116 0.0000571804 2 scaffold32_6892495 23.1.3.2 Protein translocation.chloroplast.inner envelope TIC translocation system.translocation channel (Tic110)
CH_shi_117 0.0000571804 2 scaffold8_16897533 24.2.2.12 Solute transport.carrier-mediated transport.MFS superfamily.organic anion transporter (OATP)
CH_shi_118 0.0000571804 2 scaffold7_18583372 26.11.3.1 External stimuli response.virus.virus infection.susceptibility factor (EXA1)
CH_shi_119 0.0000571804 2 scaffold22_8815566 5.2.5.6 Lipid metabolism.glycerolipid biosynthesis.phosphatidylcholine.acyl-CoA:lysophosphatidylcholine acyltransferase
CH_shi_12 0.00000000000841332 4 scaffold2_22354274 22.3.4.8.5 Vesicle trafficking.post-Golgi trafficking.vesicle tethering.GARP/EARP complexes.EARP-specific component Syndetin-like
CH_shi_120 0.0000571804 2 scaffold2_22354274 6.1.1.6 Nucleotide metabolism.purines.ribonucleotide (RN) anabolism.aminoimidazole RN carboxylase
CH_shi_121 0.0000571804 2 scaffold5_19632047 6.1.1.8 Nucleotide metabolism.purines.ribonucleotide (RN) anabolism.adenylosuccinate lyase
CH_shi_122 0.0000571804 2 scaffold32_6892495 6.2.4.3 Nucleotide metabolism.pyrimidines.catabolism.dihydropyrimidine dehydrogenase (PYD1)
CH_shi_123 0.0000571804 2 scaffold2_22354274 7.7.1.2 Coenzyme metabolism.pyridoxalphosphate biosynthesis.pyridoxal 5'-phosphate synthase complex.glutaminase component
CH_shi_124 0.0000571804 2 scaffold54_3822261 14.2.1 DNA damage response.DNA repair polymerase activities.DNA polymerase eta (POLH)
CH_shi_125 0.0000571804 2 scaffold28_7511268 15.5.27 RNA biosynthesis.transcriptional regulation.transcription factor (ELF3)
CH_shi_126 0.0000571804 2 scaffold20_10339243 18.6.1 Protein modification.tyrosine sulfation.tyrosyl protein sulfotransferase
CH_shi_127 0.0000571804 2 scaffold19_10581841 19.5.1 Protein homeostasis.protein repair.protein-L-isoaspartate methyltransferase
CH_shi_128 0.0000571804 2 scaffold52_3862006 27.12.4 Multi-process regulation.RAM (Regulation of Ace2 and Morphogenesis) signalling.scaffold component (MO25)
CH_shi_129 0.0000695955 3 scaffold66_2751028 50.3.2 Enzyme classification.EC_3 hydrolases.EC_3.2 glycosylase
CH_shi_13 0.00000000000841332 4 scaffold13_12996478 7.11.3.2.3 Coenzyme metabolism.iron-sulfur cluster assembly machinery.cytosolic CIA system.transfer phase.assembly factor (MMS19)
CH_shi_130 0.0000897461 4 scaffold3_21451142 12.3.3.8.1 Chromatin organisation.post-translational histone modification.histone lysine methylation.JmjC group histone demethylase activities.histone demethylase (KDM3)
CH_shi_131 0.0000902425 3 scaffold1_25991295 22.3.4.4.1.3 Vesicle trafficking.post-Golgi trafficking.vesicle tethering.RAB-GTPase membrane association.RAB-GTPase geranylgeranyltransferase (RGT) complex.accessory subunit
CH_shi_132 0.000106965 3 scaffold5_19632047 50.2.4 Enzyme classification.EC_2 transferases.EC_2.4 glycosyltransferase
CH_shi_133 0.000111647 3 scaffold54_3822261 21.3.5.1.2 Cell wall organisation.pectin.modification and degradation.polygalacturonase activities.polygalacturonase (QRT3)
CH_shi_134 0.000117655 3 scaffold1_25991295 5.7.3 Lipid metabolism.lipid degradation.fatty acid degradation
CH_shi_135 0.00016609 3 scaffold9_16683904 50.1.10 Enzyme classification.EC_1 oxidoreductases.EC_1.10 oxidoreductase acting on diphenol or related substance as donor
CH_shi_136 0.000171536 2 scaffold2_22354274 13.3.5.5.2.2.1 Cell cycle organisation.mitosis and meiosis.meiotic recombination.meiotic crossover.class II interference-insensitive crossover pathway.MUS81-independent pathway.endonuclease (FAN1)
CH_shi_137 0.000171536 2 scaffold60_3140063 13.3.2.2.1.2 Cell cycle organisation.mitosis and meiosis.chromosome segregation.centromere assembly and maintenance.chromosome passenger complex (CPC).component INCENP/WYRD
CH_shi_138 0.000171536 2 scaffold5_19632047 13.3.5.5.1.3 Cell cycle organisation.mitosis and meiosis.meiotic recombination.meiotic crossover.class I interference-sensitive crossover pathway.transverse filament protein of synaptonemal complex (ZYP1/ZIP1)
CH_shi_139 0.000171536 2 scaffold19_10581841 13.3.5.5.1.7 Cell cycle organisation.mitosis and meiosis.meiotic recombination.meiotic crossover.class I interference-sensitive crossover pathway.pachytene checkpoint protein (PCH2/CRC1)
CH_shi_14 0.0000000000196305 4 scaffold5_19632047 19.3.2.4 Protein homeostasis.autophagy.nucleation complexes.regulatory kinase component VPS15
CH_shi_140 0.000171536 2 scaffold27_7528638 15.3.3.5.1.4 RNA biosynthesis.RNA polymerase II-dependent transcription.transcription initiation.TFIIh basal transcription factor complex.core module.component TFB1
CH_shi_141 0.000171536 2 scaffold28_7511268 17.1.2.2.1.8 Protein biosynthesis.ribosome biogenesis.large ribosomal subunit (LSU).LSU processome.pre-60S ribosomal subunit nuclear assembly.assembly factor (SMO4)
CH_shi_142 0.000171536 2 scaffold12_13443846 4.1.2.2.8.6 Amino acid metabolism.biosynthesis.aspartate family.aspartate-derived amino acids.isoleucine.valine/leucine/isoleucine aminotransferase
CH_shi_143 0.000171536 2 scaffold9_16683904 11.10.1.2.1 Phytohormone action.signalling peptides.NCRP (non-cysteine-rich-peptide) category.phytosulfokine activity.pythosulfokine precursor polypeptide (PSK)
CH_shi_144 0.000171536 2 scaffold39_5409082 11.2.4.1.3 Phytohormone action.auxin.transport.polar auxin transport.regulatory protein (BIG)
CH_shi_145 0.000171536 2 scaffold66_2751028 13.3.1.1.2 Cell cycle organisation.mitosis and meiosis.chromatin condensation.condensin I/II complex.component CAP-E2/SMC2
CH_shi_146 0.000171536 2 scaffold10_15062905 13.3.1.2.3 Cell cycle organisation.mitosis and meiosis.chromatin condensation.condensin I complex.component CAP-H
CH_shi_147 0.000171536 2 scaffold22_8815566 14.1.3.1.2 DNA damage response.DNA damage sensing and signalling.DNA damage checkpoint activation.ATR-ATRIP DNA damage sensor complex.kinase co-activator component ATRIP
CH_shi_148 0.000171536 2 scaffold6_19132642 16.10.1.1.2 RNA processing.messenger ribonucleoparticle (mRNP) export.TREX/THO mRNP trafficking complex.THO subcomplex.component THOC2/Tho2
CH_shi_149 0.000171536 2 scaffold18_10761044 18.3.4.2.5 Protein modification.lipidation.glycophosphatidylinositol (GPI) anchor addition.GPI transamidase complex.component GAA1
CH_shi_15 0.0000000000392644 4 scaffold12_13443846 50.2.6 Enzyme classification.EC_2 transferases.EC_2.6 transferase transferring nitrogenous group
CH_shi_150 0.000171536 2 scaffold9_16683904 19.4.5.7.2 Protein homeostasis.proteolysis.metallopeptidase activities.carboxypeptidase activities.M14-class carboxypeptidase (SOL)
CH_shi_151 0.000171536 2 scaffold15_12544384 20.1.5.1.3 Cytoskeleton organisation.microtubular network.microtubule dynamics.microtubule (MT) plus-end-tracking.MT plus-end-tracking protein (SPR1)
CH_shi_152 0.000171536 2 scaffold8_16897533 21.3.1.1.3 Cell wall organisation.pectin.homogalacturonan.biosynthesis.methyltransferase (CGR)
CH_shi_153 0.000171536 2 scaffold16_12220143 22.3.4.10.5 Vesicle trafficking.post-Golgi trafficking.vesicle tethering.Golgin-mediated tethering.golgin (GC3/GC4)
CH_shi_154 0.000171536 2 scaffold3_21451142 22.3.4.6.4 Vesicle trafficking.post-Golgi trafficking.vesicle tethering.TRAPP-II complex-specific components.component TRAPPC13
CH_shi_155 0.000171536 2 scaffold26_7557582 22.3.5.2.3 Vesicle trafficking.post-Golgi trafficking.target membrane fusion.regulation.regulatory protein (TMS)
CH_shi_156 0.000171536 2 scaffold3_21451142 23.5.1.2.9 Protein translocation.nucleus.nucleocytoplasmic transport.cargo receptor activities.export karyopherin (XPO1)
CH_shi_157 0.000171536 2 scaffold77_2072970 25.4.2.1.1 Nutrient uptake.metal homeostasis.iron.regulation.iron-binding sensor (HRZ/BRUTUS)
CH_shi_158 0.000171536 2 scaffold7_18583372 26.9.3.2.2 External stimuli response.pathogen.defense mechanisms.defensin activities.defensin (PDF2)
CH_shi_159 0.000171536 2 scaffold4_21100006 4.1.2.2.4 Amino acid metabolism.biosynthesis.aspartate family.aspartate-derived amino acids.bifunctional homoserine dehydrogenase and aspartate kinase
CH_shi_16 0.0000000000706658 4 scaffold7_18583372 22.2.3.2.3 Vesicle trafficking.Golgi-ER retrograde trafficking.vesicle tethering.DSL1 tethering complex.component MIP2
CH_shi_160 0.000171536 2 scaffold12_13443846 4.1.5.1.6 Amino acid metabolism.biosynthesis.shikimate family.shikimate pathway.chorismate synthase
CH_shi_161 0.000171536 2 scaffold9_16683904 14.1.3.4 DNA damage response.DNA damage sensing and signalling.DNA damage checkpoint activation.checkpoint activation factor (MEI1)
CH_shi_162 0.000171536 2 scaffold59_3208471 14.4.1.1 DNA damage response.nonhomologous end-joining (NHEJ) repair.Ku70-Ku80 helicase complex.component KU70
CH_shi_163 0.000171536 2 scaffold1_25991295 15.4.4.1 RNA biosynthesis.RNA polymerase III-dependent transcription.TFIIIc transcription factor complex.component TFC1/Tau95
CH_shi_164 0.000171536 2 scaffold11_13529635 16.10.1.4 RNA processing.messenger ribonucleoparticle (mRNP) export.TREX/THO mRNP trafficking complex.UAP56-associated mRNA export factor (MOS11)
CH_shi_165 0.000171536 2 scaffold80_1929857 16.5.10.1 RNA processing.RNA modification.histidine-tRNA maturation.histidine-tRNA guanylyltransferase (ICA)
CH_shi_166 0.000171536 2 scaffold8_16897533 17.5.1.1 Protein biosynthesis.translation elongation.eEF1 aminoacyl-tRNA binding factor activity.aminoacyl-tRNA binding factor (eEF1A)
CH_shi_167 0.000171536 2 scaffold20_10339243 18.4.4.1 Protein modification.phosphorylation.CK protein kinase superfamily.protein kinase (CKL)
CH_shi_168 0.000171536 2 scaffold26_7557582 20.3.2.4 Cytoskeleton organisation.actin and tubulin folding.Prefoldin co-chaperone complex.component PFD4
CH_shi_169 0.000171536 2 scaffold26_7557582 5.1.4.1 Lipid metabolism.fatty acid biosynthesis.plastidial fatty acid synthase (ptFAS) system.acyl carrier protein (ptACP)
CH_shi_17 0.000000000294426 4 scaffold4_21100006 18.11.1.4 Protein modification.targeting peptide maturation.endomembrane system.signal peptidase (SPP)
CH_shi_170 0.000171536 2 scaffold6_19132642 7.9.1.3 Coenzyme metabolism.NAD/NADP biosynthesis.de-novo pathway.quinolinate phosphoribosyl transferase
CH_shi_171 0.000171536 2 scaffold7_18583372 14.2.4 DNA damage response.DNA repair polymerase activities.DNA polymerase lambda (POLL)
CH_shi_172 0.000171536 2 scaffold5_19632047 7.10.1 Coenzyme metabolism.FMN/FAD biosynthesis.ribitol kinase
CH_shi_173 0.000171541 2 scaffold26_7557582 15.6.1.2.3.3 RNA biosynthesis.organelle machinery.RNA polymerase activities.plastid-encoded RNA polymerase (PEP) complex.regulatory co-factor components.component TAC9
CH_shi_174 0.000171541 2 scaffold61_3099142 12.4.1.3.4 Chromatin organisation.nucleosome remodeling.SWI/SNF chromatin remodeling complexes.plant-specific components.component LUH
CH_shi_175 0.000171541 2 scaffold20_10339243 15.3.4.2.4 RNA biosynthesis.RNA polymerase II-dependent transcription.transcription co-activation.TFIId complex.component TAF4
CH_shi_176 0.000171541 2 scaffold28_7511268 15.5.51.6.1 RNA biosynthesis.transcriptional regulation.transcriptional repression.LEUNIG-SEUSS repressor complex.component LUG/LUH
CH_shi_177 0.000171541 2 scaffold49_4090992 16.11.3.3.2 RNA processing.organelle machinery.RNA modification.C-to-U RNA editing.RNA editing factor (ORRM)
CH_shi_178 0.000171541 2 scaffold73_2239179 16.3.1.4.2 RNA processing.RNA 3'-end processing.mRNA polyadenylation.Cleavage Factor I (CF-Im) complex.component CPFS6/CFIm68
CH_shi_179 0.000171541 2 scaffold11_13529635 18.4.26.1.5 Protein modification.phosphorylation.protein aspartate phosphatase superfamily.FCP phosphatase families.subcluster H/CPL1-2 phosphatase
CH_shi_18 0.000000000353329 4 scaffold68_2605431 9.1.4.2 Secondary metabolism.terpenoids.terpene biosynthesis.mono-/sesquiterpene-/diterpene synthase
CH_shi_180 0.000171541 2 scaffold20_10339243 2.4.6.1.2 Cellular respiration.oxidative phosphorylation.ATP synthase complex.membrane MF0 subcomplex.subunit b
CH_shi_181 0.000171541 2 scaffold69_2594531 22.3.1.7.7 Vesicle trafficking.post-Golgi trafficking.clathrin coated vesicle (CCV) machinery.TPLATE cargo co-adaptor complex.component EH
CH_shi_182 0.000171541 2 scaffold8_16897533 24.2.7.1.2 Solute transport.carrier-mediated transport.IT superfamily.DASS family.dicarboxylate:malate antiporter (DIT)
CH_shi_183 0.000171541 2 scaffold3_21451142 13.7.1.3 Cell cycle organisation.germline development.male germ cell division.regulatory factor (DUO3)
CH_shi_184 0.000171541 2 scaffold26_7557582 19.4.2.4 Protein homeostasis.proteolysis.serine-type peptidase activities.S16-class protease (LON)
CH_shi_185 0.000171541 2 scaffold50_4036370 24.2.6.2 Solute transport.carrier-mediated transport.TOC superfamily.transport protein (TSUP)
CH_shi_186 0.000171541 2 scaffold18_10761044 7.4.1.1 Coenzyme metabolism.coenzyme A biosynthesis.pantothenate biosynthesis.ketopantoate hydroxymethyltransferase
CH_shi_187 0.000227837 3 scaffold149_526024 2.4.6.1.3 Cellular respiration.oxidative phosphorylation.ATP synthase complex.membrane MF0 subcomplex.subunit c
CH_shi_188 0.000343063 2 scaffold3_21451142 13.3.3.1.1.1.2 Cell cycle organisation.mitosis and meiosis.metaphase to anaphase transition.Anaphase-Promoting Complex/Cyclosome (APC/C)-dependent ubiquitination.APC/C E3 ubiquitin protein ligase complex.platform subcomplex.component APC4
CH_shi_189 0.000343063 2 scaffold18_10761044 17.1.2.2.2.4 Protein biosynthesis.ribosome biogenesis.large ribosomal subunit (LSU).LSU processome.pre-60S ribosomal subunit nuclear export.ATP-dependent export factor (MDN1)
CH_shi_19 0.00000000056132 4 scaffold42_4718812 13.3.5.3.1.2 Cell cycle organisation.mitosis and meiosis.meiotic recombination.meiotic double strand break processing.MRE11-RAD50-NBS1 (MRN) complex.component RAD50
CH_shi_190 0.000343063 2 scaffold58_3239794 23.5.1.1.1.10 Protein translocation.nucleus.nucleocytoplasmic transport.nuclear pore complex (NPC).outer ring.scaffold nucleoporin (ELYS)
CH_shi_191 0.000343063 2 scaffold52_3862006 10.5.6.1.8 Redox homeostasis.ascorbate-based redox regulation.ascorbate metabolism.L-galactose biosynthesis pathway.L-galactono-1,4-lactone dehydrogenase (GLDH)
CH_shi_192 0.000343063 2 scaffold17_11767850 16.5.7.2.3 RNA processing.RNA modification.tRNA methylation.TRM7-TRM732/TRM734 tRNA cytidine/guanosine-methyltransferase complex.component TRM734
CH_shi_193 0.000343063 2 scaffold27_7528638 18.1.1.4.8 Protein modification.glycosylation.N-linked glycosylation.dolichol-phosphate-linked oligosaccharide precursor assembly.alpha-1,2-mannosyltransferase (ALG9)
CH_shi_194 0.000343063 2 scaffold88_1731055 18.3.4.2.1 Protein modification.lipidation.glycophosphatidylinositol (GPI) anchor addition.GPI transamidase complex.component PIG-K
CH_shi_195 0.000343063 2 scaffold37_5694058 22.3.4.8.3 Vesicle trafficking.post-Golgi trafficking.vesicle tethering.GARP/EARP complexes.component VPS53/HIT1
CH_shi_196 0.000343063 2 scaffold52_3862006 19.4.6.5 Protein homeostasis.proteolysis.protease inhibitor activities.Cystatin protease inhibitor
CH_shi_197 0.000343063 2 scaffold9_16683904 23.3.1.5 Protein translocation.endoplasmic reticulum.co-translational insertion system.accessory component Sec63
CH_shi_198 0.000343063 2 scaffold39_5409082 10.5.2 Redox homeostasis.ascorbate-based redox regulation.monodehydroascorbate reductase (MDAR)
CH_shi_199 0.000343063 2 scaffold99_1336101 13.5.1 Cell cycle organisation.organellar DNA replication.DNA polymerase (POP)
CH_shi_2 8.0191e-17 5 scaffold32_6892495 18.2.2.2 Protein modification.acetylation.NatB N-terminal acetylase complex.auxiliary component NAA25
CH_shi_20 0.00000000490454 3 scaffold51_3900769 15.3.4.3.3.3 RNA biosynthesis.RNA polymerase II-dependent transcription.transcription co-activation.SAGA complex.SPT recruitment module.component SPT20/ADA5
CH_shi_200 0.000343063 2 scaffold90_1626485 14.5.3 DNA damage response.base excision repair (BER).methyladenine-DNA glycosylase (MAG)
CH_shi_201 0.000343063 2 scaffold5_19632047 50.6.3 Enzyme classification.EC_6 ligases.EC_6.3 ligase forming carbon-nitrogen bond
CH_shi_202 0.000343083 2 scaffold32_6892495 19.2.1.2.1.1 Protein homeostasis.ubiquitin-proteasome system.N-degron pathways.Arg/N-degron pathway.N-terminal modification.cysteine oxidase (PCO)
CH_shi_203 0.000343083 2 scaffold7_18583372 12.1.3.1 Chromatin organisation.chromatin structure.DNA bending.architectural protein (HMG-B)
CH_shi_204 0.000343083 2 scaffold19_10581841 12.5.1.2 Chromatin organisation.DNA methylation.RNA-directed DNA methylation (RdDM) pathway.auxiliary factor (MORC)
CH_shi_205 0.000343083 2 scaffold5_19632047 20.2.2.5 Cytoskeleton organisation.microfilament network.actin polymerisation.villin actin-crosslinking factor
CH_shi_206 0.000343083 2 scaffold13_12996478 19.1.2 Protein homeostasis.protein quality control.ribosome-associated chaperone activities
CH_shi_207 0.000489683 3 scaffold140_625291 23.5.1.1.3.1 Protein translocation.nucleus.nucleocytoplasmic transport.nuclear pore complex (NPC).linker subcomplex.scaffold nucleoporin (NUP93)
CH_shi_208 0.000514599 2 scaffold15_12544384 12.3.3.9.2 Chromatin organisation.post-translational histone modification.histone lysine methylation.histone methylation reader activities.histone H3K36 methylation reader (EML)
CH_shi_209 0.000514599 2 scaffold39_5409082 15.6.1.1 RNA biosynthesis.organelle machinery.RNA polymerase activities.nuclear-encoded organellar RNA polymerase (NEP)
CH_shi_21 0.00000000490454 3 scaffold10_15062905 19.2.1.3.1.6 Protein homeostasis.ubiquitin-proteasome system.N-degron pathways.Pro/N-degron pathway.GID ubiquitination complex.deubiquitinase component (GID6/UBP14)
CH_shi_210 0.000514599 2 scaffold61_3099142 16.6.3.6 RNA processing.ribonuclease activities.RNA-dependent RNase P complex.component RPP25/POP6 or RPP20/POP7
CH_shi_211 0.000571755 2 scaffold3_21451142 15.3.4.4.3.6 RNA biosynthesis.RNA polymerase II-dependent transcription.transcription co-activation.MEDIATOR complex.tail module.component MED16
CH_shi_212 0.000571755 2 scaffold1_25991295 19.2.1.2.2.2 Protein homeostasis.ubiquitin-proteasome system.N-degron pathways.Arg/N-degron pathway.Arg/N-recognin activities.type-II-residues E3 ubiquitin ligase (PRT1)
CH_shi_213 0.000571755 2 scaffold39_5409082 13.3.1.1.1 Cell cycle organisation.mitosis and meiosis.chromatin condensation.condensin I/II complex.component CAP-C/SMC4
CH_shi_214 0.000571755 2 scaffold29_7503565 22.3.4.5.2 Vesicle trafficking.post-Golgi trafficking.vesicle tethering.RAB5-RAB7-dependent pathway.RAB5 nucleotide exchange factor (VPS9)
CH_shi_215 0.000571755 2 scaffold9_16683904 26.9.3.2.1 External stimuli response.pathogen.defense mechanisms.defensin activities.defensin (PDF1)
CH_shi_216 0.000571755 2 scaffold7_18583372 22.5.2.3 Vesicle trafficking.exocytic trafficking.exocytosis regulation.regulatory protein (NERD1)
CH_shi_217 0.000571804 2 scaffold92_1596972 20.3.3.1.4 Cytoskeleton organisation.actin and tubulin folding.post-CCT Tubulin folding pathway.TFC tubulin folding cofactors.cofactor (TFC-D)
CH_shi_218 0.000571804 2 scaffold58_3239794 24.2.3.3.2 Solute transport.carrier-mediated transport.APC superfamily.NCS-2 family.solute transporter (NAT)
CH_shi_219 0.000571804 2 scaffold5_19632047 15.5.1.4 RNA biosynthesis.transcriptional regulation.C2C2 transcription factor superfamily.transcription factor (YABBY)
CH_shi_22 0.00000000490454 3 scaffold4_21100006 12.4.2.4.1 Chromatin organisation.nucleosome remodeling.ISWI chromatin remodeling complexes.ISWI-CDD complex.component DDR
CH_shi_220 0.000571804 2 scaffold196_284860 24.2.1.5 Solute transport.carrier-mediated transport.DMT superfamily.solute transporter (UmamiT)
CH_shi_221 0.000571804 2 scaffold38_5640129 24.2.16 Solute transport.carrier-mediated transport.nucleoside transporter (ENT)
CH_shi_222 0.000694786 3 scaffold6_19132642 5.5.1 Lipid metabolism.phytosterol biosynthesis.plant sterol pathway
CH_shi_223 0.000857608 2 scaffold32_6892495 15.3.4.4.1.8 RNA biosynthesis.RNA polymerase II-dependent transcription.transcription co-activation.MEDIATOR complex.head module.component MED22
CH_shi_224 0.000857608 2 scaffold5_19632047 2.4.1.4.2.4 Cellular respiration.oxidative phosphorylation.NADH dehydrogenase complex.non-core modules.beta subcomplex.component NDUFB4
CH_shi_225 0.000857608 2 scaffold33_6547121 16.5.2.2.2 RNA processing.RNA modification.N6-threonylcarbamoylation.KEOPS/EKC threonylcarbamoyl-AMP synthase complex.component BUD32
CH_shi_226 0.000857608 2 scaffold27_7528638 22.3.4.6.2 Vesicle trafficking.post-Golgi trafficking.vesicle tethering.TRAPP-II complex-specific components.component TRS130/CLUB
CH_shi_227 0.000857608 2 scaffold11_13529635 22.3.4.9.2 Vesicle trafficking.post-Golgi trafficking.vesicle tethering.HOPS/CORVET tethering complexes.component VPS16/VCL1
CH_shi_228 0.000857706 2 scaffold63_2876970 15.3.4.4.1.6 RNA biosynthesis.RNA polymerase II-dependent transcription.transcription co-activation.MEDIATOR complex.head module.component MED19
CH_shi_229 0.000857706 2 scaffold29_7503565 22.4.3.1 Vesicle trafficking.endocytic trafficking.ubiquitylated cargo adaptation.ubiquitin adaptor protein (TOL)
CH_shi_23 0.00000000490454 3 scaffold3_21451142 12.4.4.2 Chromatin organisation.nucleosome remodeling.SWR1 chromatin remodeling complex.component SWC2
CH_shi_24 0.00000000490454 3 scaffold9_16683904 3.6.2 Carbohydrate metabolism.mannose metabolism.phosphomannomutase
CH_shi_25 0.00000000494448 4 scaffold76_2129029 24.1.2.4.1.1 Solute transport.primary active transport.P-type ATPase superfamily.P4 family.phospholipid flippase complex.P4-type ATPase component ALA
CH_shi_26 0.0000000196176 3 scaffold7_18583372 16.4.1.2.6.2 RNA processing.RNA surveillance.exosome complex.associated co-factor activities.SUPERKILLER (SKI) regulation complex.component SKI3
CH_shi_27 0.0000000196176 3 scaffold8_16897533 19.3.3.5.1.2 Protein homeostasis.autophagy.phagophore expansion.membrane shuttling.ATG9-2-18 membrane-recruiting complex.component ATG2
CH_shi_28 0.0000000196176 3 scaffold5_19632047 15.4.4.4 RNA biosynthesis.RNA polymerase III-dependent transcription.TFIIIc transcription factor complex.component TFC4/Tau131
CH_shi_29 0.0000000196176 3 scaffold1_25991295 16.5.7.9 RNA processing.RNA modification.tRNA methylation.tRNA cytidine-methyltransferase (TRM4)
CH_shi_3 4.81132e-16 5 scaffold48_4099315 20.1.2.1.6 Cytoskeleton organisation.microtubular network.microtubule Tubulin heterodimer formation.gamma-Tubulin Ring Complex (gamma-TuRC).component GCP6
CH_shi_30 0.0000000196176 3 scaffold13_12996478 16.9.2.4 RNA processing.mRNA silencing.miRNA pathway.HYL1-interacting scaffold factor (CARP9)
CH_shi_31 0.0000000196176 3 scaffold15_12544384 18.12.4.1 Protein modification.cysteine disulfide formation.apoplast.atypical quiescin sulfhydryl oxidase (QSOX)
CH_shi_32 0.0000000196176 3 scaffold37_5694058 27.5.2.6 Multi-process regulation.phosphatidylinositol and inositol phosphate system.degradation.phosphatidylinositol 3-phosphate phosphatase (MTM)
CH_shi_33 0.0000000196182 3 scaffold3_21451142 16.3.1.5.2 RNA processing.RNA 3'-end processing.mRNA polyadenylation.Cleavage Factor II (CF-IIm) complex.component Pcf11
CH_shi_34 0.0000000196182 3 scaffold13_12996478 23.5.1.2.14 Protein translocation.nucleus.nucleocytoplasmic transport.cargo receptor activities.export karyopherin (XPO7)
CH_shi_35 0.0000000388278 4 scaffold47_4158293 2.4.4.2 Cellular respiration.oxidative phosphorylation.cytochrome c.CCM cytochrome c maturation system (system I)
CH_shi_36 0.0000000490426 3 scaffold79_1975033 12.4.3.2 Chromatin organisation.nucleosome remodeling.INO80 chromatin remodeling complex.component ARP5
CH_shi_37 0.0000000490426 3 scaffold7_18583372 22.5.1.2 Vesicle trafficking.exocytic trafficking.Exocyst complex.component SEC3
CH_shi_38 0.0000000490454 3 scaffold117_961422 15.3.4.4.1.2 RNA biosynthesis.RNA polymerase II-dependent transcription.transcription co-activation.MEDIATOR complex.head module.component MED8
CH_shi_39 0.0000000784688 3 scaffold7_18583372 16.3.1.2.9 RNA processing.RNA 3'-end processing.mRNA polyadenylation.Cleavage and Polyadenylation Specificity Factor (CPSF) complex.component Symplekin/Pta1
CH_shi_4 4.81132e-16 5 scaffold71_2458239 22.3.4.8.4 Vesicle trafficking.post-Golgi trafficking.vesicle tethering.GARP/EARP complexes.GARP-specific component VPS54
CH_shi_40 0.0000000980824 3 scaffold6_19132642 15.3.4.4.3.7 RNA biosynthesis.RNA polymerase II-dependent transcription.transcription co-activation.MEDIATOR complex.tail module.component MED23
CH_shi_41 0.0000000980824 3 scaffold14_12630789 16.2.4.2.4 RNA processing.pre-mRNA splicing.U12-type-intron-specific minor spliceosome.U11/U12 small nuclear ribonucleoprotein particle (snRNP).protein factor (U11/U12-65K)
CH_shi_42 0.0000000980824 3 scaffold19_10581841 23.4.1.2.2 Protein translocation.peroxisome.importomer translocation system.cargo-receptor docking complex.component Pex14
CH_shi_43 0.0000000980824 3 scaffold2_22354274 15.4.6.1 RNA biosynthesis.RNA polymerase III-dependent transcription.TFIIIf transcription factor heterodimer.small subunit
CH_shi_44 0.0000000980824 3 scaffold29_7503565 27.4.2 Multi-process regulation.Rop-GTPase regulatory system.ROP-activating protein (RopGAP)
CH_shi_45 0.000000230266 4 scaffold11_13529635 13.1.2.1.4 Cell cycle organisation.cell cycle control.regulation.MuvB/DREAM regulatory complexes.E2F-DP dimer
CH_shi_46 0.000000274615 3 scaffold6_19132642 13.3.5.5.2.1.1.1 Cell cycle organisation.mitosis and meiosis.meiotic recombination.meiotic crossover.class II interference-insensitive crossover pathway.MUS81-dependent pathway.MUS81-EME1 Holliday junction cleavage heterodimer.component MUS81
CH_shi_47 0.000000490384 3 scaffold37_5694058 19.4.5.7.3 Protein homeostasis.proteolysis.metallopeptidase activities.carboxypeptidase activities.M28-class carboxypeptidase
CH_shi_48 0.000000588427 3 scaffold9_16683904 22.3.4.7.1 Vesicle trafficking.post-Golgi trafficking.vesicle tethering.TRAPP-III-complex-specific components.component TRAPPC8/TRS85
CH_shi_49 0.000000686499 3 scaffold9_16683904 22.3.1.8.4 Vesicle trafficking.post-Golgi trafficking.clathrin coated vesicle (CCV) machinery.CCV accessory factor activities.clathrin uncoating protein (AUL)
CH_shi_5 0.0000000000000885502 6 scaffold33_6547121 18.4.1.20 Protein modification.phosphorylation.TKL protein kinase superfamily.protein kinase (LRK10-1-like)
CH_shi_50 0.00000164767 3 scaffold89_1656250 9.1.4.2 Secondary metabolism.terpenoids.terpene biosynthesis.mono-/sesquiterpene-/diterpene synthase
CH_shi_51 0.00000223157 3 scaffold23_8152026 23.5.1.1.3.1 Protein translocation.nucleus.nucleocytoplasmic transport.nuclear pore complex (NPC).linker subcomplex.scaffold nucleoporin (NUP93)
CH_shi_52 0.00000271566 4 scaffold32_6892495 13.2.5.1 Cell cycle organisation.DNA replication.telomere replication.telomerase ribonucleoprotein complex
CH_shi_53 0.00000274552 3 scaffold36_5715340 16.4.2.1.2.5 RNA processing.RNA surveillance.mRNA deadenylation-dependent decay.mRNA deadenylation.CCR4-NOT complex.component NOT3/5
CH_shi_54 0.00000892091 3 scaffold8_16897533 18.3.4.1.2 Protein modification.lipidation.glycophosphatidylinositol (GPI) anchor addition.GPI pre-assembly.N-acetylglucosaminyl-phosphatidylinositol de-N-acetylase (PIG-L)
CH_shi_55 0.0000144095 3 scaffold89_1656250 21.7.1 Cell wall organisation.callose.callose synthase
CH_shi_56 0.0000345738 3 scaffold74_2176963 12.3.3.8.1 Chromatin organisation.post-translational histone modification.histone lysine methylation.JmjC group histone demethylase activities.histone demethylase (KDM3)
CH_shi_57 0.0000413747 3 scaffold24_7948270 24.2.3 Solute transport.carrier-mediated transport.APC superfamily
CH_shi_58 0.0000571804 2 scaffold27_7528638 13.3.3.1.1.3.1 Cell cycle organisation.mitosis and meiosis.metaphase to anaphase transition.Anaphase-Promoting Complex/Cyclosome (APC/C)-dependent ubiquitination.APC/C E3 ubiquitin protein ligase complex.catalytic core subcomplex.scaffold component APC2
CH_shi_59 0.0000571804 2 scaffold19_10581841 13.3.5.5.2.2.3 Cell cycle organisation.mitosis and meiosis.meiotic recombination.meiotic crossover.class II interference-insensitive crossover pathway.MUS81-independent pathway.crosslink repair helicase (HRQ1)
CH_shi_6 0.00000000000056092 4 scaffold84_1800311 15.3.4.4.4.2 RNA biosynthesis.RNA polymerase II-dependent transcription.transcription co-activation.MEDIATOR complex.regulatory kinase module.component MED13
CH_shi_60 0.0000571804 2 scaffold9_16683904 17.1.3.2.1.4.1 Protein biosynthesis.ribosome biogenesis.small ribosomal subunit (SSU).SSU processome.pre-40S ribosomal subunit nuclear assembly.UtpC module.assembly factor (UTP22)
CH_shi_61 0.0000571804 2 scaffold7_18583372 12.3.1.1.2.2 Chromatin organisation.post-translational histone modification.histone acetylation.NuA4 histone acetyltransferase complex.assembly platform.assembly platform component TRA1
CH_shi_62 0.0000571804 2 scaffold28_7511268 15.3.4.4.1.4 RNA biosynthesis.RNA polymerase II-dependent transcription.transcription co-activation.MEDIATOR complex.head module.component MED17
CH_shi_63 0.0000571804 2 scaffold26_7557582 15.3.4.4.3.4 RNA biosynthesis.RNA polymerase II-dependent transcription.transcription co-activation.MEDIATOR complex.tail module.component MED14
CH_shi_64 0.0000571804 2 scaffold16_12220143 15.3.4.4.4.1 RNA biosynthesis.RNA polymerase II-dependent transcription.transcription co-activation.MEDIATOR complex.regulatory kinase module.component MED12
CH_shi_65 0.0000571804 2 scaffold77_2072970 16.5.5.1.4.2 RNA processing.RNA modification.thiolation.CTU1-URM1 pathway.CTU1-CTU2 tRNA thiouridylase complex.component CTU2
CH_shi_66 0.0000571804 2 scaffold4_21100006 16.5.8.1.1.1 RNA processing.RNA modification.mRNA methylation.adenosine N6-methylation.adenosine N6-methyltransferase complex.component MTA
CH_shi_67 0.0000571804 2 scaffold66_2751028 17.1.3.2.2.1 Protein biosynthesis.ribosome biogenesis.small ribosomal subunit (SSU).SSU processome.pre-40S ribosomal subunit nuclear export.export factor (Ltv1)
CH_shi_68 0.0000571804 2 scaffold26_7557582 18.1.1.4.2.1 Protein modification.glycosylation.N-linked glycosylation.dolichol-phosphate-linked oligosaccharide precursor assembly.ALG13-ALG14 UDP-N-acetylglucosamine transferase heterodimer.catalytic component ALG13
CH_shi_69 0.0000571804 2 scaffold10_15062905 19.2.2.3.2.2 Protein homeostasis.ubiquitin-proteasome system.ubiquitin-fold protein conjugation.RUB/NEDD8 conjugation (neddylation).RUB activating E1 heterodimer.small component AXR1/AXL
CH_shi_7 0.00000000000056092 4 scaffold60_3140063 19.4.1.6 Protein homeostasis.proteolysis.cysteine-type peptidase activities.C50-class protease separase (AESP)
CH_shi_70 0.0000571804 2 scaffold8_16897533 19.2.4.2.3.2 Protein homeostasis.ubiquitin-proteasome system.membrane-associated protein degradation.ER-associated protein degradation (ERAD).substrate processing.ubiquitin-binding adaptor (UFD3)
CH_shi_71 0.0000571804 2 scaffold9_16683904 22.3.4.4.1.1 Vesicle trafficking.post-Golgi trafficking.vesicle tethering.RAB-GTPase membrane association.RAB-GTPase geranylgeranyltransferase (RGT) complex.subunit alpha
CH_shi_72 0.0000571804 2 scaffold75_2171804 23.4.1.5.1.1 Protein translocation.peroxisome.importomer translocation system.receptor export system.Pex1-Pex6 subcomplex.component Pex1
CH_shi_73 0.0000571804 2 scaffold84_1800311 23.5.1.1.7.1 Protein translocation.nucleus.nucleocytoplasmic transport.nuclear pore complex (NPC).cytoplasmic filaments.nucleoporin (NUP214)
CH_shi_74 0.0000571804 2 scaffold14_12630789 11.1.2.1.4 Phytohormone action.abscisic acid.perception and signalling.receptor activities.plasma membrane-localized receptor (GTG)
CH_shi_75 0.0000571804 2 scaffold32_6892495 12.3.6.1.5 Chromatin organisation.post-translational histone modification.PRC1 bifunctional histone ubiquitination and methylation reader complex.core components.LHP1-regulatory component ELP1
CH_shi_76 0.0000571804 2 scaffold10_15062905 12.4.8.3.2 Chromatin organisation.nucleosome remodeling.other chromatin remodeling activities.Rad5/16-like group.chromatin remodeling factor (Rad5-like)
CH_shi_77 0.0000571804 2 scaffold62_2896931 13.2.1.1.1 Cell cycle organisation.DNA replication.preinitiation.origin recognition complex.component ORC1
CH_shi_78 0.0000571804 2 scaffold9_16683904 13.3.2.3.1 Cell cycle organisation.mitosis and meiosis.chromosome segregation.kinetochore proteins.kinetochore assembly protein (CENP-C)
CH_shi_79 0.0000571804 2 scaffold10_15062905 13.3.4.1.1 Cell cycle organisation.mitosis and meiosis.sister chromatid separation.cohesin regulator complex.component SMC1/TTN8
CH_shi_8 0.00000000000280452 4 scaffold3_21451142 13.3.4.3.1 Cell cycle organisation.mitosis and meiosis.sister chromatid separation.cohesin establishment.cohesin cofactor (WAPL)
CH_shi_80 0.0000571804 2 scaffold48_4099315 13.3.4.1.2 Cell cycle organisation.mitosis and meiosis.sister chromatid separation.cohesin regulator complex.component SMC3/TTN7
CH_shi_81 0.0000571804 2 scaffold5_19632047 13.3.5.2.3 Cell cycle organisation.mitosis and meiosis.meiotic recombination.meiotic double strand break initiation.accessory protein (PRD2/MEI4)
CH_shi_82 0.0000571804 2 scaffold4_21100006 14.6.3.2.3 DNA damage response.nucleotide excision repair (NER).multi-functional TFIIh complex.core module.subunit SSL2/XPB
CH_shi_83 0.0000571804 2 scaffold32_6892495 15.3.3.3.1 RNA biosynthesis.RNA polymerase II-dependent transcription.transcription initiation.TFIIe basal transcription factor heterodimer.subunit alpha
CH_shi_84 0.0000571804 2 scaffold31_7046607 15.3.3.7.1 RNA biosynthesis.RNA polymerase II-dependent transcription.transcription initiation.SNAP snRNA transcription factor complex.component SNAPC1
CH_shi_85 0.0000571804 2 scaffold5_19632047 16.2.5.3.1 RNA processing.pre-mRNA splicing.spliceosome-associated non-snRNP MOS4-associated complex (MAC).recruitment to spliceosome.arginine methyltransferase (PRMT5/CAU1)
CH_shi_86 0.0000571804 2 scaffold6_19132642 16.3.1.2.7 RNA processing.RNA 3'-end processing.mRNA polyadenylation.Cleavage and Polyadenylation Specificity Factor (CPSF) complex.component Pfs2/FY
CH_shi_87 0.0000571804 2 scaffold4_21100006 16.3.1.2.8 RNA processing.RNA 3'-end processing.mRNA polyadenylation.Cleavage and Polyadenylation Specificity Factor (CPSF) complex.ubiquitin ligase component PQT3/MPE1
CH_shi_88 0.0000571804 2 scaffold54_3822261 16.3.2.1.1 RNA processing.RNA 3'-end processing.snRNA maturation.DSP snRNA processing complex.component DSP1
CH_shi_89 0.0000571804 2 scaffold18_10761044 16.5.7.3.2 RNA processing.RNA modification.tRNA methylation.TRM8-TRM82 tRNA guanosine-methyltransferase complex.component TRM82
CH_shi_9 0.00000000000280452 4 scaffold94_1542895 22.3.4.9.5 Vesicle trafficking.post-Golgi trafficking.vesicle tethering.HOPS/CORVET tethering complexes.HOPS-specific component VPS39
CH_shi_90 0.0000571804 2 scaffold1_25991295 17.1.1.9.3 Protein biosynthesis.ribosome biogenesis.rRNA biosynthesis.ITS2 rRNA removal.rRNA processing factor (APUM24)
CH_shi_91 0.0000571804 2 scaffold18_10761044 17.5.2.2.2 Protein biosynthesis.translation elongation.eEF2 mRNA-translocation factor activity.regulatory eEF2 diphthamide-modification.diphthamide biosynthesis protein (DPH2)
CH_shi_92 0.0000571804 2 scaffold31_7046607 17.5.2.2.6 Protein biosynthesis.translation elongation.eEF2 mRNA-translocation factor activity.regulatory eEF2 diphthamide-modification.diphthamide synthetase (DPH6)
CH_shi_93 0.0000571804 2 scaffold42_4718812 17.5.3.2.2 Protein biosynthesis.translation elongation.eEF5 poly-P/G elongation factor activity.regulatory eEF5 hypusination.deoxyhypusine hydroxylase
CH_shi_94 0.0000571804 2 scaffold18_10761044 19.1.1.1.2 Protein homeostasis.protein quality control.ER Quality Control (ERQC) machinery.calnexin/calreticulin chaperone system.UDP-glucose glycoprotein glucosyltransferase (UGGT)
CH_shi_95 0.0000571804 2 scaffold19_10581841 19.3.3.1.2 Protein homeostasis.autophagy.phagophore expansion.ATG8-binding cargo receptor activities.cargo receptor protein (NBR1)
CH_shi_96 0.0000571804 2 scaffold36_5715340 20.2.2.1.3 Cytoskeleton organisation.microfilament network.actin polymerisation.Arp2/3 actin polymerization initiation complex.component ArpC1
CH_shi_97 0.0000571804 2 scaffold21_10161493 22.2.3.1.7 Vesicle trafficking.Golgi-ER retrograde trafficking.vesicle tethering.COG tethering complex.component COG7
CH_shi_98 0.0000571804 2 scaffold95_1435917 22.3.4.10.2 Vesicle trafficking.post-Golgi trafficking.vesicle tethering.Golgin-mediated tethering.golgin (CASP)
CH_shi_99 0.0000571804 2 scaffold5_19632047 22.3.4.10.3 Vesicle trafficking.post-Golgi trafficking.vesicle tethering.Golgin-mediated tethering.golgin (GC1)