Cluster id E-value Cluster size Chromosome Identifier Description
CH_cre_1 2.74317e-37 27 chromosome_6 12.1 Chromatin organisation.chromatin structure
CH_cre_10 0.000000019404 3 chromosome_2 19.2.4.2.1.6 Protein homeostasis.ubiquitin-proteasome system.membrane-associated protein degradation.ER-associated protein degradation (ERAD).HRD1 E3 ubiquitin ligase complex.associated plant-specific component PAWH
CH_cre_11 0.0000000647967 4 chromosome_7 5.5.4.2 Lipid metabolism.phytosterol biosynthesis.phytosterol esterification.acyl-CoA:cholesterol acyltransferase
CH_cre_12 0.000000310433 3 chromosome_16 24.2.2.6 Solute transport.carrier-mediated transport.MFS superfamily.phosphate transporter (PHT1)
CH_cre_13 0.000000388014 3 chromosome_3 24.2.9.2.2 Solute transport.carrier-mediated transport.CDF superfamily.CDF family.manganese cation transporter (Mn-CDF)
CH_cre_14 0.00000102212 4 chromosome_1 18.4.1.30 Protein modification.phosphorylation.TKL protein kinase superfamily.protein kinase (MAP3K-RAF)
CH_cre_15 0.00000108662 3 chromosome_16 19.2.2.2.1 Protein homeostasis.ubiquitin-proteasome system.ubiquitin-fold protein conjugation.SUMO conjugation (sumoylation).ubiquitin-fold protein (SUMO)
CH_cre_16 0.00000180763 4 chromosome_4 22.3.5.1.5.1 Vesicle trafficking.post-Golgi trafficking.target membrane fusion.membrane fusion complexes.R-type SNARE longin components.VAMP7-group component
CH_cre_17 0.00000202624 5 chromosome_9 50.1.13 Enzyme classification.EC_1 oxidoreductases.EC_1.14 oxidoreductase acting on paired donor with incorporation or reduction of molecular oxygen
CH_cre_18 0.00000426888 3 chromosome_16 50.2.4 Enzyme classification.EC_2 transferases.EC_2.4 glycosyltransferase
CH_cre_19 0.00000434433 3 chromosome_2 10.4.3.8 Redox homeostasis.thiol-based redox regulation.thioredoxin activities.nucleoredoxin
CH_cre_2 4.34033e-33 26 chromosome_6 12.1.1 Chromatin organisation.chromatin structure.DNA wrapping
CH_cre_20 0.00000588163 4 chromosome_12 18.13.1 Protein modification.protein folding.protein folding catalyst (Cyclophilin)
CH_cre_21 0.0000108585 3 chromosome_17 24.2.3.11 Solute transport.carrier-mediated transport.APC superfamily.potassium cation transporter (HAK/KUP/KT)
CH_cre_22 0.0000151302 4 chromosome_6 1.1.1.1.1 Photosynthesis.photophosphorylation.photosystem II.LHC-II complex.component LHCb1/2/3
CH_cre_23 0.0000387722 4 chromosome_13 12.1.1 Chromatin organisation.chromatin structure.DNA wrapping
CH_cre_24 0.0000567567 3 chromosome_7 50.1.13 Enzyme classification.EC_1 oxidoreductases.EC_1.14 oxidoreductase acting on paired donor with incorporation or reduction of molecular oxygen
CH_cre_25 0.000113733 2 chromosome_11 17.1.3.2.1.11 Protein biosynthesis.ribosome biogenesis.small ribosomal subunit (SSU).SSU processome.pre-40S ribosomal subunit nuclear assembly.assembly factor (UTP14)
CH_cre_26 0.000113733 2 chromosome_2 22.3.5.1.4.3 Vesicle trafficking.post-Golgi trafficking.target membrane fusion.membrane fusion complexes.Qc-type SNARE components.SYP7-group component
CH_cre_27 0.000113733 2 chromosome_2 1.2.1.1.2 Photosynthesis.calvin cycle.ribulose-1,5-bisphosphat carboxylase/oxygenase (RuBisCo) activity.RuBisCo heterodimer.small subunit
CH_cre_28 0.000113733 2 chromosome_12 14.3.6.1.2 DNA damage response.homologous recombination repair (HR).Smc5-Smc6 complex.NSE2-SMC5-SMC6 subcomplex.component SMC6
CH_cre_29 0.000113733 2 chromosome_17 2.4.6.1.3 Cellular respiration.oxidative phosphorylation.ATP synthase complex.membrane MF0 subcomplex.subunit c
CH_cre_3 6.57531e-25 18 chromosome_12 12.1.1 Chromatin organisation.chromatin structure.DNA wrapping
CH_cre_30 0.000113733 2 chromosome_12 25.4.2.3.3 Nutrient uptake.metal homeostasis.iron.non-vascular plant-specific uptake.iron-uptake facilitator (FEA)
CH_cre_31 0.000113733 2 chromosome_2 4.1.2.2.5 Amino acid metabolism.biosynthesis.aspartate family.aspartate-derived amino acids.homoserine kinase
CH_cre_32 0.000113733 2 chromosome_12 13.5.5.2 Cell cycle organisation.organellar DNA replication.single-stranded DNA (ssDNA) maintenance.ssDNA-binding protein (OSB)
CH_cre_33 0.000113733 2 chromosome_1 14.6.2.1 DNA damage response.nucleotide excision repair (NER).transcription-coupled nucleotide excision repair (TC-NER).DNA repair protein (CSA)
CH_cre_34 0.000113733 2 chromosome_6 24.2.2.17 Solute transport.carrier-mediated transport.MFS superfamily.solute transporter (UNE2)
CH_cre_35 0.000113733 2 chromosome_3 6.3.2.3 Nucleotide metabolism.deoxynucleotides.salvage pathway.thymidylate kinase
CH_cre_36 0.000113733 2 chromosome_9 10.6.2 Redox homeostasis.tocopherol biosynthesis.4-hydroxyphenylpyruvate dioxygenase (HPPD)
CH_cre_37 0.000113733 2 chromosome_12 18.7.1 Protein modification.S-nitrosylation.S-nitrosoglutathione reductase (GSNOR)
CH_cre_38 0.000113733 2 chromosome_3 27.2.5 Multi-process regulation.Programmed Cell Death (PCD) system.PCD suppressor (BON)
CH_cre_39 0.000119303 3 chromosome_4 5.1.7.5 Lipid metabolism.fatty acid biosynthesis.fatty acid desaturation.delta-7/delta-9 fatty acid desaturase (FAD5/ADS)
CH_cre_4 1.1692e-16 16 chromosome_17 12.1.1 Chromatin organisation.chromatin structure.DNA wrapping
CH_cre_40 0.000126768 3 chromosome_8 1.1.1.5.3.1.3.1 Photosynthesis.photophosphorylation.photosystem II.photosynthetic acclimation.non-photochemical quenching (NPQ).qE/qZ-type quenching.LhcSR-dependent machinery.light stress-responsive protein (LhcSR)
CH_cre_41 0.000253984 3 chromosome_14 50.3.4 Enzyme classification.EC_3 hydrolases.EC_3.4 hydrolase acting on peptide bond (peptidase)
CH_cre_42 0.00034118 2 chromosome_7 16.5.8.1.1.3 RNA processing.RNA modification.mRNA methylation.adenosine N6-methylation.adenosine N6-methyltransferase complex.regulatory component FIP37
CH_cre_43 0.00034118 2 chromosome_7 17.1.2.2.3.7 Protein biosynthesis.ribosome biogenesis.large ribosomal subunit (LSU).LSU processome.60S ribosomal subunit cytoplasmic maturation.maturation factor (GDP1)
CH_cre_44 0.00034118 2 chromosome_10 14.3.6.1.1 DNA damage response.homologous recombination repair (HR).Smc5-Smc6 complex.NSE2-SMC5-SMC6 subcomplex.component SMC5
CH_cre_45 0.00034118 2 chromosome_12 22.3.1.8.3 Vesicle trafficking.post-Golgi trafficking.clathrin coated vesicle (CCV) machinery.CCV accessory factor activities.regulatory protein (MTV1)
CH_cre_46 0.0003412 2 chromosome_2 24.2.3.4.7 Solute transport.carrier-mediated transport.APC superfamily.AAAP family.solute transporter (AAAP)
CH_cre_47 0.0003412 2 chromosome_2 11.9.1.3 Phytohormone action.strigolactone.biosynthesis.carotenoid cleavage dioxygenase (CCD8)
CH_cre_48 0.0003412 2 chromosome_1 18.4.2.4 Protein modification.phosphorylation.STE protein kinase superfamily.protein kinase (MAP3K-WNK)
CH_cre_49 0.0003412 2 chromosome_8 24.2.3.7 Solute transport.carrier-mediated transport.APC superfamily.proton:urea symporter (DUR)
CH_cre_5 8.77908e-16 16 chromosome_17 12.1.1 Chromatin organisation.chromatin structure.DNA wrapping
CH_cre_50 0.0003412 2 chromosome_4 1.5.1 Photosynthesis.carbon dioxide-bicarbonate interconversion.alpha-type carbonic anhydrase
CH_cre_51 0.000391565 3 chromosome_14 5.1.1.4 Lipid metabolism.fatty acid biosynthesis.citrate shuttle.cytosolic NADP-dependent malic enzyme
CH_cre_52 0.000422907 3 chromosome_8 9 Secondary metabolism
CH_cre_53 0.000601977 6 chromosome_2 50.2.7 Enzyme classification.EC_2 transferases.EC_2.7 transferase transferring phosphorus-containing group
CH_cre_54 0.000682322 2 chromosome_1 1.1.1.5.3.1.1 Photosynthesis.photophosphorylation.photosystem II.photosynthetic acclimation.non-photochemical quenching (NPQ).qE/qZ-type quenching.pH-sensor protein (PsbS)
CH_cre_55 0.000682322 2 chromosome_2 1.1.1.2.12 Photosynthesis.photophosphorylation.photosystem II.PS-II complex.component PsbX
CH_cre_56 0.000682322 2 chromosome_13 6.1.1.8 Nucleotide metabolism.purines.ribonucleotide (RN) anabolism.adenylosuccinate lyase
CH_cre_57 0.0006824 2 chromosome_11 1.1.1.5.3.1.4 Photosynthesis.photophosphorylation.photosystem II.photosynthetic acclimation.non-photochemical quenching (NPQ).qE/qZ-type quenching.regulatory protein (FLAP1)
CH_cre_58 0.0006824 2 chromosome_12 24.1.2.4.1.1 Solute transport.primary active transport.P-type ATPase superfamily.P4 family.phospholipid flippase complex.P4-type ATPase component ALA
CH_cre_6 0.000000000308998 4 chromosome_17 19.2.2.2.1 Protein homeostasis.ubiquitin-proteasome system.ubiquitin-fold protein conjugation.SUMO conjugation (sumoylation).ubiquitin-fold protein (SUMO)
CH_cre_7 0.000000000331021 4 chromosome_1 24.3.2.2 Solute transport.channels.VIC superfamily.voltage-gated potassium cation channel (AKT/SKOR/GORK)
CH_cre_8 0.0000000072808 4 chromosome_2 24.2.17 Solute transport.carrier-mediated transport.phosphate transporter (PHT2)
CH_cre_9 0.0000000157736 4 chromosome_9 25.1 Nutrient uptake.nitrogen assimilation