Functional clusters

Information

  • Type InterPro
  • Description S-receptor-like serine/threonine-protein kinase

Cluster overview

Species Chromosome Experiment Cluster id Cluster size Number of genes E-value
Avicennia marina ScioBoG_19538_HRSCAF_19626 5 CH_ama_100 3 3 0.0000407486
Arachis hypogaea arahy.Tifrunner.gnm1.Arahy.03 5 CH_arhy_743 4 5 0.00000771127
Arachis hypogaea arahy.Tifrunner.gnm1.Arahy.19 5 CH_arhy_839 4 6 0.0000230936
Arabidopsis thaliana Chr1 5 CH_ath_63 7 24 0.0000000000000806066
Capsicum annuum PGAv.1.6.scaffold424 5 CH_can_29 12 15 3.46304e-26
Cicer arietinum L. Ca_LG1_v3 5 CH_car_174 3 3 0.0000265784
Corylus avellana 2 5 CH_cav_557 3 3 0.0000871184
Cardamine hirsuta Chr1 5 CH_chi_162 6 16 0.000000000777384
Carya illinoinensis Chr04 5 CH_cil_301 5 5 0.0000000398519
Carya illinoinensis Chr14 5 CH_cil_398 5 7 0.000000831185
Corchorus olitorius AWUE01022462.1 5 CH_col_164 2 2 0.000292099
Chenopodium quinoa C_Quinoa_Scaffold_1373 5 CH_cqu_786 3 3 0.000161329
Capsella rubella scaffold_6 5 CH_cru_490 3 4 0.000130129
Daucus carota DCARv2_Chr1 5 CH_dca_143 5 8 0.00000000456017
Durio zibethinus NW_019167860.1 5 CH_dzi_176 6 17 0.000000044543
Durio zibethinus NW_019168270.1 5 CH_dzi_224 5 10 0.000000449467
Eucalyptus grandis Chr06 5 CH_egr_247 10 13 3.26249e-16
Erythranthe guttata scaffold_1 5 CH_egut_547 3 3 0.00012073
Erythranthe guttata scaffold_14 5 CH_egut_548 3 3 0.00012073
Fragaria vesca Fvb1 5 CH_fve_404 4 4 0.00000136532
Fragaria vesca Fvb2 5 CH_fve_505 4 6 0.0000203986
Gossypium hirsutum D06 5 CH_ghi_1189 3 3 0.000499637
Glycine max Gm03 5 CH_gma_315 5 7 0.00000005949
Helianthus annuus HanXRQChr08 5 CH_han_1089 6 49 0.000393645
Lactuca sativa Lsat_1_v8_lg_6 5 CH_lsa_459 5 10 0.00000228052
Lactuca sativa Lsat_1_v8_lg_6 5 CH_lsa_468 4 4 0.00000312661
Lactuca sativa Lsat_1_v8_lg_9 5 CH_lsa_520 6 28 0.00000948877
Lactuca sativa Lsat_1_v8_lg_8 5 CH_lsa_644 4 7 0.000108655
Malus domestica Chr15 5 CH_mdo_1287 3 3 0.000518696
Malus domestica Chr11 5 CH_mdo_165 10 56 0.00000000000254765
Manihot esculenta Chromosome12 5 CH_mes_231 6 9 0.00000000227732
Manihot esculenta Chromosome03 5 CH_mes_746 3 3 0.000989168
Marchantia polymorpha scaffold_86 5 CH_mpo_191 2 2 0.000331327
Medicago truncatula chr2 5 CH_mtr_1307 6 58 0.000470069
Medicago truncatula chr3 5 CH_mtr_199 8 12 0.0000000000000383849
Medicago truncatula chr4 5 CH_mtr_829 4 5 0.0000103926
Olea europaea chr7 5 CH_oeu_62 5 5 0.00000000012903
Oryza sativa ssp. japonica chr01 5 CH_osa_111 7 11 0.00000000000253654
Oryza sativa ssp. japonica chr04 5 CH_osa_187 6 12 0.00000000172091
Petunia axillaris Peaxi162Scf00324 5 CH_pax_372 3 3 0.0000368287
Petunia axillaris Peaxi162Scf00381 5 CH_pax_595 3 5 0.000367698
Punica granatum NC_045129.1 5 CH_pgr_577 3 3 0.000462325
Prunus persica Pp06 5 CH_ppe_296 6 12 0.0000000206893
Prunus persica Pp06 5 CH_ppe_434 4 4 0.00000252174
Pisum sativum chr5LG3 5 CH_psa_584 3 4 0.00021605
Populus trichocarpa Chr19 5 CH_ptr_134 8 12 0.00000000000147661
Quercus lobata 6 5 CH_qlo_1182 4 4 0.0000350779
Quercus lobata 9 5 CH_qlo_1667 8 78 0.00049488
Quercus lobata 6 5 CH_qlo_500 8 14 0.0000000000859461
Quercus lobata 1 5 CH_qlo_558 7 10 0.000000000651968
Rhododendron simsii chr11 5 CH_rsi_848 3 3 0.000299239
Rhododendron simsii chr02 5 CH_rsi_911 4 13 0.000435293
Salvia bowleyana GWHASIU00000005 5 CH_sbo_427 4 8 0.0000125118
Schrenkiella parvula ch7-4 5 CH_spa_204 3 3 0.0000339783
Schrenkiella parvula ch1-1 5 CH_spa_48 6 13 0.0000000000551966
Selenicereus undatus Scaffold_33676 5 CH_sun_135 3 4 0.00000905807
Theobroma cacao Chromosome_7 5 CH_tca_733 3 3 0.000661071
Trifolium pratense Tp57577_TGAC_v2_scaf_212 5 CH_tpr_203 4 4 0.0000000681416
Vaccinium macrocarpon chr11_Vaccinium_macrocarpon_Stevens_v1 5 CH_vma_235 4 4 0.000000429411
Vanilla planifolia CM028153.1 5 CH_vpl_306 3 3 0.0000188357
Avicennia marina ScioBoG_19538_HRSCAF_19626 6 CH_ama_100 3 3 0.0000407486
Arachis hypogaea arahy.Tifrunner.gnm1.Arahy.03 6 CH_arhy_743 4 5 0.00000771127
Arachis hypogaea arahy.Tifrunner.gnm1.Arahy.19 6 CH_arhy_839 4 6 0.0000230936
Arabidopsis thaliana Chr1 6 CH_ath_63 7 24 0.0000000000000806066
Capsicum annuum PGAv.1.6.scaffold424 6 CH_can_29 12 15 3.46304e-26
Cicer arietinum L. Ca_LG1_v3 6 CH_car_174 3 3 0.0000265784
Corylus avellana 2 6 CH_cav_557 3 3 0.0000871184
Cardamine hirsuta Chr1 6 CH_chi_162 6 16 0.000000000777384
Carya illinoinensis Chr04 6 CH_cil_301 5 5 0.0000000398519
Carya illinoinensis Chr14 6 CH_cil_398 5 7 0.000000831185
Cucumis melo chr02 6 CH_cme_327 3 4 0.000119943
Corchorus olitorius AWUE01022462.1 6 CH_col_164 2 2 0.000292099
Chenopodium quinoa C_Quinoa_Scaffold_1373 6 CH_cqu_786 3 3 0.000161329
Capsella rubella scaffold_6 6 CH_cru_490 3 4 0.000130129
Daucus carota DCARv2_Chr1 6 CH_dca_143 5 8 0.00000000456017
Durio zibethinus NW_019167860.1 6 CH_dzi_176 6 17 0.000000044543
Durio zibethinus NW_019168270.1 6 CH_dzi_224 5 10 0.000000449467
Eucalyptus grandis Chr06 6 CH_egr_247 10 13 3.26249e-16
Erythranthe guttata scaffold_1 6 CH_egut_547 3 3 0.00012073
Erythranthe guttata scaffold_14 6 CH_egut_548 3 3 0.00012073
Fragaria x ananassa Fvb3-2 6 CH_fan_808 4 11 0.0000799932
Fragaria vesca Fvb1 6 CH_fve_404 4 4 0.00000136532
Fragaria vesca Fvb2 6 CH_fve_505 4 6 0.0000203986
Gossypium hirsutum D06 6 CH_ghi_1189 3 3 0.000499637
Glycine max Gm03 6 CH_gma_315 5 7 0.00000005949
Helianthus annuus HanXRQChr08 6 CH_han_1089 6 49 0.000393645
Lactuca sativa Lsat_1_v8_lg_6 6 CH_lsa_459 5 10 0.00000228052
Lactuca sativa Lsat_1_v8_lg_6 6 CH_lsa_468 4 4 0.00000312661
Lactuca sativa Lsat_1_v8_lg_9 6 CH_lsa_520 6 28 0.00000948877
Lactuca sativa Lsat_1_v8_lg_8 6 CH_lsa_644 4 7 0.000108655
Malus domestica Chr15 6 CH_mdo_1287 3 3 0.000518696
Malus domestica Chr11 6 CH_mdo_165 10 56 0.00000000000254765
Manihot esculenta Chromosome12 6 CH_mes_231 6 9 0.00000000227732
Manihot esculenta Chromosome03 6 CH_mes_746 3 3 0.000989168
Marchantia polymorpha scaffold_86 6 CH_mpo_191 2 2 0.000331327
Medicago truncatula chr2 6 CH_mtr_1307 6 58 0.000470069
Medicago truncatula chr3 6 CH_mtr_199 8 12 0.0000000000000383849
Medicago truncatula chr4 6 CH_mtr_829 4 5 0.0000103926
Olea europaea chr7 6 CH_oeu_62 5 5 0.00000000012903
Oryza sativa ssp. japonica chr01 6 CH_osa_111 7 11 0.00000000000253654
Oryza sativa ssp. japonica chr04 6 CH_osa_187 6 12 0.00000000172091
Petunia axillaris Peaxi162Scf00324 6 CH_pax_372 3 3 0.0000368287
Petunia axillaris Peaxi162Scf00381 6 CH_pax_595 3 5 0.000367698
Punica granatum NC_045129.1 6 CH_pgr_577 3 3 0.000462325
Prunus persica Pp06 6 CH_ppe_296 6 12 0.0000000206893
Prunus persica Pp06 6 CH_ppe_434 4 4 0.00000252174
Pisum sativum chr5LG3 6 CH_psa_584 3 4 0.00021605
Populus trichocarpa Chr19 6 CH_ptr_134 8 12 0.00000000000147661
Quercus lobata 6 6 CH_qlo_1182 4 4 0.0000350779
Quercus lobata 9 6 CH_qlo_1667 8 78 0.00049488
Quercus lobata 6 6 CH_qlo_500 8 14 0.0000000000859461
Quercus lobata 1 6 CH_qlo_558 7 10 0.000000000651968
Rhododendron simsii chr11 6 CH_rsi_848 3 3 0.000299239
Rhododendron simsii chr02 6 CH_rsi_911 4 13 0.000435293
Salvia bowleyana GWHASIU00000005 6 CH_sbo_427 4 8 0.0000125118
Schrenkiella parvula ch7-4 6 CH_spa_204 3 3 0.0000339783
Schrenkiella parvula ch1-1 6 CH_spa_48 6 13 0.0000000000551966
Selenicereus undatus Scaffold_33676 6 CH_sun_135 3 4 0.00000905807
Theobroma cacao Chromosome_7 6 CH_tca_733 3 3 0.000661071
Trifolium pratense Tp57577_TGAC_v2_scaf_212 6 CH_tpr_203 4 4 0.0000000681416
Vaccinium macrocarpon chr11_Vaccinium_macrocarpon_Stevens_v1 6 CH_vma_235 4 4 0.000000429411
Vanilla planifolia CM028153.1 6 CH_vpl_306 3 3 0.0000188357

Functional Clusters Experiments

Exp id Data type Data filter Min genes cluster Max genes cluster Max cluster size E-value Tandems removal
1 MapMan No filter applied. 2 30 80 0.001
2 MapMan No filter applied. 2 30 80 0.001
3 GO All GO data. 2 30 80 0.001
4 GO All GO data. 2 30 80 0.001
5 InterPro No filter applied. 2 30 80 0.001
6 InterPro No filter applied. 2 30 80 0.001